Wall clock time and date at job start Tue Mar 31 2020 00:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45209 * 109.46907 * 2 1 4 4 C 1.34392 * 117.00071 * 179.97438 * 3 2 1 5 5 C 1.36400 * 120.00277 * 179.97438 * 4 3 2 6 6 C 1.43190 * 120.00026 * 180.02562 * 5 4 3 7 7 N 5.80704 * 147.24114 * 0.02562 * 2 1 3 8 8 C 1.46932 * 119.99283 * 0.02562 * 5 4 3 9 9 O 1.21687 * 120.00630 * 352.30811 * 8 5 4 10 10 N 1.34776 * 119.99330 * 172.31651 * 8 5 4 11 11 C 1.36960 * 120.00264 * 355.60281 * 10 8 5 12 12 H 1.07995 * 120.00191 * 317.63492 * 11 10 8 13 13 C 1.38973 * 120.00095 * 137.63595 * 11 10 8 14 14 N 1.31421 * 119.99970 * 167.01195 * 13 11 10 15 15 Si 1.86803 * 120.00037 * 347.01942 * 13 11 10 16 16 H 1.48497 * 109.47288 * 84.55540 * 15 13 11 17 17 H 1.48497 * 109.46907 * 204.55824 * 15 13 11 18 18 H 1.48501 * 109.46533 * 324.55568 * 15 13 11 19 19 C 1.46503 * 119.99618 * 175.60937 * 10 8 5 20 20 C 1.54267 * 110.03207 * 306.97143 * 19 10 8 21 21 C 1.54975 * 104.15572 * 95.75630 * 20 19 10 22 22 C 1.54894 * 102.77526 * 37.89193 * 21 20 19 23 23 C 1.53874 * 110.03710 * 64.19580 * 19 10 8 24 24 H 1.08998 * 109.46964 * 60.00295 * 1 2 3 25 25 H 1.09000 * 109.46357 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47294 * 300.00010 * 1 2 3 27 27 H 1.09001 * 109.47239 * 240.00333 * 2 1 3 28 28 H 1.08990 * 109.47205 * 119.99907 * 2 1 3 29 29 H 1.08003 * 119.99943 * 0.02562 * 4 3 2 30 30 H 0.97002 * 119.99981 * 185.00278 * 14 13 11 31 31 H 1.09006 * 110.01334 * 185.58621 * 19 10 8 32 32 H 1.09000 * 110.49056 * 214.40214 * 20 19 10 33 33 H 1.08994 * 110.48801 * 337.05376 * 20 19 10 34 34 H 1.08996 * 110.71779 * 279.57613 * 21 20 19 35 35 H 1.09003 * 110.91980 * 156.29735 * 21 20 19 36 36 H 1.08995 * 110.48013 * 203.40630 * 22 21 20 37 37 H 1.08993 * 110.59766 * 80.81367 * 22 21 20 38 38 H 1.08999 * 110.02748 * 359.95056 * 23 19 10 39 39 H 1.08993 * 110.03392 * 121.38245 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3464 1.5452 0.0005 5 6 3.8677 2.8057 0.0000 6 6 5.2873 2.9933 0.0001 7 7 6.4135 3.1422 0.0014 8 6 2.9725 3.9708 -0.0005 9 8 1.7737 3.8170 -0.1416 10 7 3.4793 5.2099 0.1551 11 6 4.8158 5.3770 0.4035 12 1 5.3209 4.7256 1.1013 13 6 5.5220 6.3848 -0.2422 14 7 6.7245 6.7143 0.1731 15 14 4.7618 7.2712 -1.7003 16 1 3.8951 8.3738 -1.2123 17 1 5.8389 7.8299 -2.5562 18 1 3.9471 6.3142 -2.4913 19 6 2.6005 6.3781 0.0585 20 6 1.8073 6.3348 -1.2639 21 6 0.4537 5.6893 -0.8730 22 6 0.1757 6.2963 0.5246 23 6 1.5638 6.3533 1.1953 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0043 0.6887 0.0005 30 1 7.1880 7.4651 -0.2300 31 1 3.1899 7.2936 0.1106 32 1 1.6520 7.3427 -1.6489 33 1 2.3256 5.7200 -1.9997 34 1 0.5471 4.6050 -0.8117 35 1 -0.3289 5.9689 -1.5783 36 1 -0.4964 5.6533 1.0928 37 1 -0.2442 7.2978 0.4310 38 1 1.7139 5.4716 1.8183 39 1 1.6499 7.2567 1.7990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159622485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:54 Heat of formation + Delta-G solvation = 10.198470 kcal Electronic energy + Delta-G solvation = -22923.419288 eV Core-core repulsion = 19640.817274 eV Total energy + Delta-G solvation = -3282.602014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -39.76386 -38.65182 -36.27574 -35.47450 -34.08192 -32.34328 -31.74193 -30.30178 -28.03370 -27.23105 -24.84451 -23.35666 -22.81261 -20.74757 -19.98580 -19.07948 -18.13368 -16.83992 -16.53124 -15.86078 -15.73879 -15.03103 -14.69371 -14.13547 -14.01291 -13.89330 -13.00480 -12.88394 -12.72357 -12.52513 -12.25820 -12.18102 -11.87914 -11.74993 -11.47455 -11.36987 -11.28349 -11.11839 -10.91737 -10.78940 -10.50655 -10.35359 -10.04072 -9.88134 -9.66099 -9.51272 -8.92845 -8.15282 -7.99297 -7.52209 -6.34490 -4.04873 1.65846 3.11260 3.18878 3.27318 3.31129 3.88844 3.97306 4.17858 4.38063 4.66872 4.79287 4.89941 5.02884 5.13121 5.17313 5.29189 5.36935 5.50910 5.60702 5.68044 5.78804 6.04957 6.08741 6.19927 6.29899 6.34150 6.37819 6.44382 6.49256 6.59659 6.66190 6.74435 6.98220 7.02277 7.35139 7.48999 7.62481 8.16427 8.37015 8.75935 9.09122 9.47011 9.85598 10.71512 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.008593 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.254857 B = 3257.773316 C = 4524.506020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.272 6.272 4 C 0.145 3.855 5 C -0.145 4.145 6 C 0.277 3.723 7 N -0.423 5.423 8 C 0.532 3.468 9 O -0.557 6.557 10 N -0.454 5.454 11 C -0.351 4.351 12 H 0.110 0.890 13 C 0.073 3.927 14 N -0.852 5.852 15 Si 0.874 3.126 16 H -0.272 1.272 17 H -0.294 1.294 18 H -0.249 1.249 19 C 0.126 3.874 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.110 4.110 23 C -0.118 4.118 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.274 0.726 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 -9.672 -0.932 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.181 6.181 4 C 0.071 3.929 5 C -0.154 4.154 6 C -0.036 4.036 7 N -0.102 5.102 8 C 0.323 3.677 9 O -0.442 6.442 10 N -0.174 5.174 11 C -0.479 4.479 12 H 0.127 0.873 13 C -0.137 4.137 14 N -0.486 5.486 15 Si 0.702 3.298 16 H -0.198 1.198 17 H -0.221 1.221 18 H -0.173 1.173 19 C 0.022 3.978 20 C -0.177 4.177 21 C -0.180 4.180 22 C -0.148 4.148 23 C -0.156 4.156 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.550 -9.262 -1.045 14.078 hybrid contribution -0.236 0.746 -0.634 1.007 sum -10.786 -8.516 -1.679 13.845 Atomic orbital electron populations 1.21708 0.92755 1.02137 1.04131 1.23337 0.96605 0.81542 1.01253 1.86540 1.18879 1.27789 1.84875 1.22942 0.84148 0.95687 0.90089 1.17316 0.86365 0.93274 1.18409 1.24414 0.91543 0.92991 0.94610 1.81186 1.12634 1.08274 1.08132 1.17730 0.87062 0.82776 0.80107 1.90266 1.13896 1.85276 1.54812 1.43740 1.07796 1.03143 1.62755 1.19362 0.82250 1.20781 1.25468 0.87252 1.25444 0.94614 0.97034 0.96567 1.69666 1.12528 1.25841 1.40587 0.87180 0.78433 0.80603 0.83623 1.19808 1.22102 1.17339 1.21910 0.91505 0.90067 0.94296 1.22910 0.97777 0.99571 0.97409 1.23378 0.93967 1.06466 0.94140 1.22170 0.96443 0.98758 0.97424 1.22364 0.94323 1.01240 0.97690 0.91243 0.90895 0.91306 0.91869 0.91904 0.84963 0.91568 0.89813 0.92978 0.91027 0.84187 0.94793 0.92579 0.93653 0.91120 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.05 0.45 6.84 37.16 0.25 0.70 16 3 O -0.27 -3.98 8.12 -37.44 -0.30 -4.29 16 4 C 0.14 2.16 10.13 30.07 0.30 2.46 16 5 C -0.15 -2.88 5.81 -105.12 -0.61 -3.49 16 6 C 0.28 6.14 11.35 -22.48 -0.26 5.88 16 7 N -0.42 -10.34 17.57 41.84 0.73 -9.60 16 8 C 0.53 11.86 6.58 -12.74 -0.08 11.77 16 9 O -0.56 -12.05 9.39 -17.24 -0.16 -12.22 16 10 N -0.45 -10.88 2.02 -107.91 -0.22 -11.10 16 11 C -0.35 -9.38 7.12 -14.99 -0.11 -9.48 16 12 H 0.11 3.16 5.65 -52.49 -0.30 2.86 16 13 C 0.07 1.99 5.30 -17.45 -0.09 1.90 16 14 N -0.85 -24.67 13.95 55.50 0.77 -23.90 16 15 Si 0.87 21.25 23.63 -169.99 -4.02 17.23 16 16 H -0.27 -6.31 6.45 56.52 0.36 -5.94 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.25 -5.97 5.27 56.52 0.30 -5.67 16 19 C 0.13 2.80 2.18 -66.81 -0.15 2.65 16 20 C -0.14 -2.86 4.01 -25.03 -0.10 -2.96 16 21 C -0.14 -2.67 6.23 -24.69 -0.15 -2.82 16 22 C -0.11 -1.92 6.76 -25.07 -0.17 -2.09 16 23 C -0.12 -2.31 5.95 -25.61 -0.15 -2.46 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.13 1.42 8.00 -52.48 -0.42 1.00 16 30 H 0.27 7.48 8.32 -40.82 -0.34 7.14 16 31 H 0.08 1.97 4.71 -51.93 -0.24 1.73 16 32 H 0.05 1.01 8.00 -51.93 -0.42 0.59 16 33 H 0.07 1.60 6.06 -51.93 -0.31 1.29 16 34 H 0.14 2.87 4.36 -56.47 -0.25 2.62 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.47 7.34 -51.93 -0.38 1.09 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -31.29 307.77 -4.88 -36.17 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.40 Total: 1.92 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.93 Total: 1.15 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.29 Total: -44.60 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.47 Total: -16.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.02 Total: 17.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.29 -4.88 -36.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159622485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds