Wall clock time and date at job start Tue Mar 31 2020 00:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45209 * 109.46907 * 2 1 4 4 C 1.34392 * 117.00071 * 179.97438 * 3 2 1 5 5 C 1.36400 * 120.00277 * 179.97438 * 4 3 2 6 6 C 1.43190 * 120.00026 * 180.02562 * 5 4 3 7 7 N 5.80704 * 147.24114 * 0.02562 * 2 1 3 8 8 C 1.46932 * 119.99283 * 0.02562 * 5 4 3 9 9 O 1.21687 * 120.00630 * 352.30811 * 8 5 4 10 10 N 1.34776 * 119.99330 * 172.31651 * 8 5 4 11 11 C 1.36960 * 120.00264 * 355.60281 * 10 8 5 12 12 H 1.07995 * 120.00191 * 317.63492 * 11 10 8 13 13 C 1.38973 * 120.00095 * 137.63595 * 11 10 8 14 14 N 1.31421 * 119.99970 * 167.01195 * 13 11 10 15 15 Si 1.86803 * 120.00037 * 347.01942 * 13 11 10 16 16 H 1.48497 * 109.47288 * 84.55540 * 15 13 11 17 17 H 1.48497 * 109.46907 * 204.55824 * 15 13 11 18 18 H 1.48501 * 109.46533 * 324.55568 * 15 13 11 19 19 C 1.46503 * 119.99618 * 175.60937 * 10 8 5 20 20 C 1.54267 * 110.03207 * 306.97143 * 19 10 8 21 21 C 1.54975 * 104.15572 * 95.75630 * 20 19 10 22 22 C 1.54894 * 102.77526 * 37.89193 * 21 20 19 23 23 C 1.53874 * 110.03710 * 64.19580 * 19 10 8 24 24 H 1.08998 * 109.46964 * 60.00295 * 1 2 3 25 25 H 1.09000 * 109.46357 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47294 * 300.00010 * 1 2 3 27 27 H 1.09001 * 109.47239 * 240.00333 * 2 1 3 28 28 H 1.08990 * 109.47205 * 119.99907 * 2 1 3 29 29 H 1.08003 * 119.99943 * 0.02562 * 4 3 2 30 30 H 0.97002 * 119.99981 * 185.00278 * 14 13 11 31 31 H 1.09006 * 110.01334 * 185.58621 * 19 10 8 32 32 H 1.09000 * 110.49056 * 214.40214 * 20 19 10 33 33 H 1.08994 * 110.48801 * 337.05376 * 20 19 10 34 34 H 1.08996 * 110.71779 * 279.57613 * 21 20 19 35 35 H 1.09003 * 110.91980 * 156.29735 * 21 20 19 36 36 H 1.08995 * 110.48013 * 203.40630 * 22 21 20 37 37 H 1.08993 * 110.59766 * 80.81367 * 22 21 20 38 38 H 1.08999 * 110.02748 * 359.95056 * 23 19 10 39 39 H 1.08993 * 110.03392 * 121.38245 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3464 1.5452 0.0005 5 6 3.8677 2.8057 0.0000 6 6 5.2873 2.9933 0.0001 7 7 6.4135 3.1422 0.0014 8 6 2.9725 3.9708 -0.0005 9 8 1.7737 3.8170 -0.1416 10 7 3.4793 5.2099 0.1551 11 6 4.8158 5.3770 0.4035 12 1 5.3209 4.7256 1.1013 13 6 5.5220 6.3848 -0.2422 14 7 6.7245 6.7143 0.1731 15 14 4.7618 7.2712 -1.7003 16 1 3.8951 8.3738 -1.2123 17 1 5.8389 7.8299 -2.5562 18 1 3.9471 6.3142 -2.4913 19 6 2.6005 6.3781 0.0585 20 6 1.8073 6.3348 -1.2639 21 6 0.4537 5.6893 -0.8730 22 6 0.1757 6.2963 0.5246 23 6 1.5638 6.3533 1.1953 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0043 0.6887 0.0005 30 1 7.1880 7.4651 -0.2300 31 1 3.1899 7.2936 0.1106 32 1 1.6520 7.3427 -1.6489 33 1 2.3256 5.7200 -1.9997 34 1 0.5471 4.6050 -0.8117 35 1 -0.3289 5.9689 -1.5783 36 1 -0.4964 5.6533 1.0928 37 1 -0.2442 7.2978 0.4310 38 1 1.7139 5.4716 1.8183 39 1 1.6499 7.2567 1.7990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159622485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:52 Heat of formation + Delta-G solvation = -9.918274 kcal Electronic energy + Delta-G solvation = -22924.291616 eV Core-core repulsion = 19640.817274 eV Total energy + Delta-G solvation = -3283.474341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.39697 -39.92478 -37.84166 -37.20581 -35.85831 -33.74225 -33.39641 -31.46592 -29.57952 -28.82240 -26.75022 -24.58224 -23.88670 -22.28415 -21.49420 -20.74038 -19.92393 -18.40106 -17.85413 -17.41791 -16.79958 -16.65891 -16.24922 -15.82342 -15.80097 -15.48744 -14.57319 -14.35019 -14.02680 -13.81537 -13.63020 -13.58691 -13.50062 -13.25290 -13.09842 -13.03592 -12.87280 -12.49465 -12.23944 -12.14655 -11.85890 -11.75206 -11.70815 -11.44165 -11.41346 -11.26098 -10.89045 -9.79593 -9.48389 -9.26568 -8.40187 -6.10840 0.31723 1.18089 1.29052 1.37103 1.98985 2.16042 2.21145 2.34404 2.75276 2.94341 3.22220 3.69769 3.79726 3.88157 3.93944 4.13564 4.23738 4.26545 4.52509 4.55160 4.59664 4.70513 4.78825 4.83437 4.95238 4.96893 4.99624 5.09818 5.10485 5.16696 5.27473 5.40536 5.42607 5.49786 5.60045 5.90711 6.11278 6.37802 6.48390 7.08606 7.12776 7.60893 8.07953 8.69871 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.008593 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.254857 B = 3257.773316 C = 4524.506020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 O -0.295 6.295 4 C 0.222 3.778 5 C -0.223 4.223 6 C 0.301 3.699 7 N -0.483 5.483 8 C 0.536 3.464 9 O -0.552 6.552 10 N -0.477 5.477 11 C -0.333 4.333 12 H 0.079 0.921 13 C 0.027 3.973 14 N -0.902 5.902 15 Si 0.920 3.080 16 H -0.254 1.254 17 H -0.302 1.302 18 H -0.245 1.245 19 C 0.117 3.883 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.101 4.101 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.186 0.814 30 H 0.272 0.728 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.916 -11.747 -1.480 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.036 4.036 3 O -0.202 6.202 4 C 0.147 3.853 5 C -0.232 4.232 6 C -0.010 4.010 7 N -0.164 5.164 8 C 0.329 3.671 9 O -0.437 6.437 10 N -0.199 5.199 11 C -0.462 4.462 12 H 0.097 0.903 13 C -0.177 4.177 14 N -0.539 5.539 15 Si 0.746 3.254 16 H -0.179 1.179 17 H -0.230 1.230 18 H -0.169 1.169 19 C 0.013 3.987 20 C -0.175 4.175 21 C -0.173 4.173 22 C -0.138 4.138 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.123 0.877 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.203 0.797 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.833 -11.373 -1.591 17.979 hybrid contribution 0.488 1.026 -0.411 1.208 sum -13.345 -10.347 -2.002 17.005 Atomic orbital electron populations 1.21773 0.92313 1.03835 1.02868 1.23842 0.96992 0.78718 1.04062 1.86512 1.18834 1.32279 1.82583 1.23461 0.84902 0.95356 0.81609 1.17190 0.84848 0.94494 1.26620 1.24763 0.91942 0.91705 0.92628 1.81185 1.14288 1.09445 1.11455 1.18074 0.87595 0.82894 0.78566 1.90297 1.13641 1.85437 1.54337 1.43793 1.06842 1.04354 1.64897 1.19066 0.83568 1.19632 1.23908 0.90317 1.26002 0.94896 0.98222 0.98547 1.69774 1.14243 1.27284 1.42648 0.86448 0.77688 0.80240 0.80978 1.17948 1.23019 1.16917 1.22022 0.91682 0.88782 0.96218 1.22892 0.98446 1.00200 0.95992 1.23247 0.93409 1.05181 0.95471 1.22138 0.95078 1.00298 0.96328 1.22336 0.95184 1.00940 0.96934 0.92521 0.87720 0.92581 0.89029 0.89073 0.79705 0.91791 0.91817 0.91530 0.93169 0.85938 0.92369 0.91364 0.91340 0.92906 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.29 71.98 0.74 -1.26 16 2 C 0.04 0.51 6.84 71.98 0.49 1.00 16 3 O -0.30 -7.47 8.12 -55.14 -0.45 -7.92 16 4 C 0.22 5.81 10.13 67.39 0.68 6.49 16 5 C -0.22 -8.63 5.81 -20.19 -0.12 -8.75 16 6 C 0.30 13.60 11.35 88.33 1.00 14.60 16 7 N -0.48 -24.58 17.57 19.00 0.33 -24.25 16 8 C 0.54 23.76 6.58 86.52 0.57 24.33 16 9 O -0.55 -23.17 9.39 17.15 0.16 -23.01 16 10 N -0.48 -23.19 2.02 -613.54 -1.24 -24.42 16 11 C -0.33 -18.51 7.12 84.07 0.60 -17.91 16 12 H 0.08 4.81 5.65 -2.91 -0.02 4.79 16 13 C 0.03 1.56 5.30 84.93 0.45 2.01 16 14 N -0.90 -54.98 13.95 21.67 0.30 -54.68 16 15 Si 0.92 44.96 23.63 68.60 1.62 46.58 16 16 H -0.25 -11.53 6.45 99.48 0.64 -10.89 16 17 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 18 H -0.25 -11.67 5.27 99.48 0.52 -11.15 16 19 C 0.12 5.13 2.18 45.72 0.10 5.23 16 20 C -0.14 -5.45 4.01 31.70 0.13 -5.33 16 21 C -0.14 -4.73 6.23 31.92 0.20 -4.53 16 22 C -0.10 -3.20 6.76 31.67 0.21 -2.99 16 23 C -0.12 -4.40 5.95 31.32 0.19 -4.21 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.19 2.90 8.00 -2.91 -0.02 2.88 16 30 H 0.27 15.70 8.32 -92.71 -0.77 14.93 16 31 H 0.06 3.01 4.71 -2.38 -0.01 3.00 16 32 H 0.07 2.42 8.00 -2.39 -0.02 2.40 16 33 H 0.05 2.19 6.06 -2.39 -0.01 2.18 16 34 H 0.12 4.75 4.36 -74.20 -0.32 4.42 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 2.17 7.34 -2.39 -0.02 2.16 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -73.13 307.77 6.48 -66.65 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.50 Total: 12.36 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.25 Total: 8.69 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -0.60 Total: -103.35 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.29 Total: -30.93 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.62 Total: 46.58 kcal Total: -73.13 6.48 -66.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159622485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.730 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds