Wall clock time and date at job start Tue Mar 31 2020 00:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47391 * 2 1 4 4 C 1.36869 * 120.00101 * 264.77089 * 3 2 1 5 5 H 1.07998 * 120.00486 * 140.33412 * 4 3 2 6 6 C 1.39054 * 119.99992 * 320.33523 * 4 3 2 7 7 N 1.31364 * 120.00017 * 164.15443 * 6 4 3 8 8 Si 1.86798 * 119.99900 * 344.15592 * 6 4 3 9 9 H 1.48502 * 109.47040 * 90.27797 * 8 6 4 10 10 H 1.48499 * 109.47129 * 210.27359 * 8 6 4 11 11 H 1.48494 * 109.47086 * 330.27722 * 8 6 4 12 12 C 1.34775 * 120.00009 * 84.77039 * 3 2 1 13 13 O 1.21591 * 120.00099 * 4.34783 * 12 3 2 14 14 C 1.47735 * 119.99881 * 184.34091 * 12 3 2 15 15 C 1.39636 * 120.53895 * 327.57572 * 14 12 3 16 16 N 1.31646 * 120.68051 * 179.67770 * 15 14 12 17 17 C 1.31917 * 121.94374 * 0.64306 * 16 15 14 18 18 C 1.38832 * 121.01733 * 359.64379 * 17 16 15 19 19 O 1.35918 * 120.39904 * 180.02562 * 18 17 16 20 20 C 1.42907 * 116.99515 * 185.48618 * 19 18 17 21 21 C 1.53002 * 109.47047 * 154.64685 * 20 19 18 22 22 C 1.53000 * 109.46982 * 274.64178 * 20 19 18 23 23 C 1.38862 * 119.19661 * 0.03629 * 18 17 16 24 24 H 1.09002 * 109.46926 * 300.00351 * 1 2 3 25 25 H 1.09007 * 109.46667 * 59.99752 * 1 2 3 26 26 H 1.08994 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47615 * 239.99943 * 2 1 3 28 28 H 1.09001 * 109.47247 * 119.99591 * 2 1 3 29 29 H 0.96996 * 120.00021 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.66193 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.49230 * 179.67844 * 17 16 15 32 32 H 1.09000 * 109.47388 * 34.64576 * 20 19 18 33 33 H 1.09009 * 109.47058 * 59.99770 * 21 20 19 34 34 H 1.08996 * 109.47552 * 179.97438 * 21 20 19 35 35 H 1.09004 * 109.47386 * 300.00039 * 21 20 19 36 36 H 1.08995 * 109.47234 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.47384 * 300.00401 * 22 20 19 38 38 H 1.09007 * 109.46645 * 60.00538 * 22 20 19 39 39 H 1.08003 * 120.88018 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3484 1.9904 -1.1804 5 1 2.0950 3.0278 -1.3421 6 6 3.0099 1.2737 -2.1715 7 7 3.0532 1.7378 -3.3997 8 14 3.8368 -0.3490 -1.7565 9 1 2.8718 -1.4606 -1.9522 10 1 5.0091 -0.5489 -2.6460 11 1 4.2869 -0.3276 -0.3416 12 6 2.1427 2.0520 1.1623 13 8 1.9255 1.4868 2.2167 14 6 2.5431 3.4741 1.1553 15 6 3.4060 3.9634 0.1725 16 7 3.7596 5.2314 0.1599 17 6 3.3310 6.0846 1.0702 18 6 2.4752 5.6781 2.0850 19 8 2.0409 6.5680 3.0161 20 6 1.2612 6.0489 4.0954 21 6 1.3931 6.9708 5.3093 22 6 -0.2070 5.9701 3.6720 23 6 2.0684 4.3514 2.1372 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5143 1.2377 -4.0911 30 1 3.7834 3.2958 -0.5879 31 1 3.6504 7.1153 1.0250 32 1 1.6184 5.0525 4.3553 33 1 1.0359 7.9673 5.0493 34 1 0.7980 6.5752 6.1324 35 1 2.4391 7.0271 5.6109 36 1 -0.8018 5.5747 4.4953 37 1 -0.5642 6.9666 3.4120 38 1 -0.3009 5.3133 2.8072 39 1 1.4028 4.0059 2.9145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163483793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:52 Heat of formation + Delta-G solvation = -24.904439 kcal Electronic energy + Delta-G solvation = -22161.224320 eV Core-core repulsion = 18877.100130 eV Total energy + Delta-G solvation = -3284.124190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.44767 -39.04366 -37.76969 -35.31330 -33.28777 -32.38741 -31.83623 -30.53367 -29.15894 -27.39094 -25.30208 -24.33250 -23.28378 -22.39953 -20.89868 -19.58185 -18.26515 -17.04705 -16.47889 -16.34173 -15.83317 -15.38895 -15.25221 -14.45445 -14.12664 -14.00107 -13.63206 -13.37615 -13.11293 -12.80131 -12.72343 -12.44710 -12.34269 -12.30509 -12.08739 -11.91464 -11.73835 -11.45165 -11.09352 -10.95277 -10.82431 -10.69796 -10.14641 -9.90138 -9.66404 -9.19055 -9.07872 -8.65695 -7.99691 -7.88761 -6.60862 -4.25834 1.33587 1.76247 2.95553 3.13766 3.20151 3.24820 3.62933 3.98634 4.12209 4.42504 4.70349 4.76124 4.84037 4.98913 5.05389 5.19131 5.40095 5.41942 5.51181 5.58152 5.61327 5.66080 5.70156 5.89509 5.94339 5.97069 6.02787 6.08107 6.15402 6.30077 6.40708 6.51437 6.65731 6.76386 7.08120 7.21922 7.55251 7.89517 8.07462 8.50294 8.74521 9.13505 9.47067 10.46719 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.005577 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.793808 B = 5019.104393 C = 5737.167423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 N -0.449 5.449 4 C -0.358 4.358 5 H 0.114 0.886 6 C 0.069 3.931 7 N -0.849 5.849 8 Si 0.882 3.118 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.259 1.259 12 C 0.519 3.481 13 O -0.593 6.593 14 C -0.113 4.113 15 C 0.111 3.889 16 N -0.459 5.459 17 C 0.075 3.925 18 C 0.056 3.944 19 O -0.308 6.308 20 C 0.073 3.927 21 C -0.146 4.146 22 C -0.180 4.180 23 C -0.128 4.128 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.279 0.721 30 H 0.201 0.799 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 5.243 10.018 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.031 4.031 3 N -0.168 5.168 4 C -0.485 4.485 5 H 0.131 0.869 6 C -0.141 4.141 7 N -0.482 5.482 8 Si 0.710 3.290 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.183 1.183 12 C 0.309 3.691 13 O -0.479 6.479 14 C -0.118 4.118 15 C -0.047 4.047 16 N -0.167 5.167 17 C -0.083 4.083 18 C 0.009 3.991 19 O -0.222 6.222 20 C 0.017 3.983 21 C -0.203 4.203 22 C -0.237 4.237 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.217 0.783 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.625 5.426 9.652 11.379 hybrid contribution -0.416 -1.320 0.607 1.511 sum -3.040 4.106 10.258 11.460 Atomic orbital electron populations 1.21992 0.96151 1.00948 1.02337 1.21720 0.94792 0.85021 1.01568 1.43614 1.55675 1.11606 1.05928 1.19283 1.38480 0.99647 0.91049 0.86909 1.25381 0.95634 0.98455 0.94604 1.69679 1.38644 1.39505 1.00385 0.86890 0.79241 0.83064 0.79809 1.19786 1.21227 1.18342 1.17989 0.81132 0.86272 0.83735 1.90633 1.56383 1.69755 1.31126 1.20843 0.99573 0.95202 0.96174 1.24330 0.92750 0.91331 0.96265 1.67938 1.22264 1.03983 1.22556 1.22307 0.95422 1.00329 0.90276 1.19939 0.97521 0.89087 0.92550 1.86089 1.67290 1.34698 1.34112 1.22430 0.90979 0.98603 0.86296 1.21832 1.02938 0.99989 0.95522 1.22371 0.95561 1.03181 1.02597 1.21720 1.01823 0.91961 0.99993 0.92728 0.91969 0.92760 0.91025 0.91214 0.90999 0.78324 0.82733 0.90762 0.91563 0.90674 0.91702 0.91098 0.91507 0.91706 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.20 37.16 0.38 -2.53 16 2 C 0.09 1.96 4.65 -4.04 -0.02 1.94 16 3 N -0.45 -10.55 2.18 -115.92 -0.25 -10.80 16 4 C -0.36 -8.84 6.70 -15.00 -0.10 -8.94 16 5 H 0.11 2.97 6.27 -52.49 -0.33 2.64 16 6 C 0.07 1.71 5.37 -17.45 -0.09 1.62 16 7 N -0.85 -22.18 13.95 55.50 0.77 -21.40 16 8 Si 0.88 19.53 24.88 -169.99 -4.23 15.30 16 9 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 10 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.52 12.20 7.38 -12.38 -0.09 12.11 16 13 O -0.59 -14.73 16.46 5.29 0.09 -14.64 16 14 C -0.11 -2.42 5.53 -104.84 -0.58 -3.00 16 15 C 0.11 2.38 8.90 -17.11 -0.15 2.22 16 16 N -0.46 -9.20 10.34 -12.77 -0.13 -9.34 16 17 C 0.07 1.30 11.13 -17.30 -0.19 1.11 16 18 C 0.06 0.96 6.62 -39.13 -0.26 0.70 16 19 O -0.31 -4.59 9.81 -19.48 -0.19 -4.78 16 20 C 0.07 0.89 2.85 -26.73 -0.08 0.82 16 21 C -0.15 -1.34 9.56 37.16 0.36 -0.99 16 22 C -0.18 -2.02 9.20 37.16 0.34 -1.68 16 23 C -0.13 -2.39 7.92 -38.70 -0.31 -2.70 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.54 3.20 -51.93 -0.17 1.38 16 28 H 0.07 1.47 7.52 -51.93 -0.39 1.08 16 29 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.20 4.60 5.41 -52.49 -0.28 4.32 16 31 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.07 0.95 6.32 -51.93 -0.33 0.62 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 39 H 0.14 2.47 5.56 -52.48 -0.29 2.17 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -28.07 317.13 -5.08 -33.15 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.12 Total: 7.05 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.79 Total: 0.68 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.39 Total: -41.54 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.10 Total: -19.42 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.23 Total: 15.30 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.07 -5.08 -33.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163483793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.249 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds