Wall clock time and date at job start Tue Mar 31 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47391 * 2 1 4 4 C 1.36869 * 120.00101 * 264.77089 * 3 2 1 5 5 H 1.07998 * 120.00486 * 140.33412 * 4 3 2 6 6 C 1.39054 * 119.99992 * 320.33523 * 4 3 2 7 7 N 1.31364 * 120.00017 * 164.15443 * 6 4 3 8 8 Si 1.86798 * 119.99900 * 344.15592 * 6 4 3 9 9 H 1.48502 * 109.47040 * 90.27797 * 8 6 4 10 10 H 1.48499 * 109.47129 * 210.27359 * 8 6 4 11 11 H 1.48494 * 109.47086 * 330.27722 * 8 6 4 12 12 C 1.34775 * 120.00009 * 84.77039 * 3 2 1 13 13 O 1.21591 * 120.00099 * 4.34783 * 12 3 2 14 14 C 1.47735 * 119.99881 * 184.34091 * 12 3 2 15 15 C 1.39636 * 120.53895 * 327.57572 * 14 12 3 16 16 N 1.31646 * 120.68051 * 179.67770 * 15 14 12 17 17 C 1.31917 * 121.94374 * 0.64306 * 16 15 14 18 18 C 1.38832 * 121.01733 * 359.64379 * 17 16 15 19 19 O 1.35918 * 120.39904 * 180.02562 * 18 17 16 20 20 C 1.42907 * 116.99515 * 185.48618 * 19 18 17 21 21 C 1.53002 * 109.47047 * 154.64685 * 20 19 18 22 22 C 1.53000 * 109.46982 * 274.64178 * 20 19 18 23 23 C 1.38862 * 119.19661 * 0.03629 * 18 17 16 24 24 H 1.09002 * 109.46926 * 300.00351 * 1 2 3 25 25 H 1.09007 * 109.46667 * 59.99752 * 1 2 3 26 26 H 1.08994 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47615 * 239.99943 * 2 1 3 28 28 H 1.09001 * 109.47247 * 119.99591 * 2 1 3 29 29 H 0.96996 * 120.00021 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.66193 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.49230 * 179.67844 * 17 16 15 32 32 H 1.09000 * 109.47388 * 34.64576 * 20 19 18 33 33 H 1.09009 * 109.47058 * 59.99770 * 21 20 19 34 34 H 1.08996 * 109.47552 * 179.97438 * 21 20 19 35 35 H 1.09004 * 109.47386 * 300.00039 * 21 20 19 36 36 H 1.08995 * 109.47234 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.47384 * 300.00401 * 22 20 19 38 38 H 1.09007 * 109.46645 * 60.00538 * 22 20 19 39 39 H 1.08003 * 120.88018 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3484 1.9904 -1.1804 5 1 2.0950 3.0278 -1.3421 6 6 3.0099 1.2737 -2.1715 7 7 3.0532 1.7378 -3.3997 8 14 3.8368 -0.3490 -1.7565 9 1 2.8718 -1.4606 -1.9522 10 1 5.0091 -0.5489 -2.6460 11 1 4.2869 -0.3276 -0.3416 12 6 2.1427 2.0520 1.1623 13 8 1.9255 1.4868 2.2167 14 6 2.5431 3.4741 1.1553 15 6 3.4060 3.9634 0.1725 16 7 3.7596 5.2314 0.1599 17 6 3.3310 6.0846 1.0702 18 6 2.4752 5.6781 2.0850 19 8 2.0409 6.5680 3.0161 20 6 1.2612 6.0489 4.0954 21 6 1.3931 6.9708 5.3093 22 6 -0.2070 5.9701 3.6720 23 6 2.0684 4.3514 2.1372 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5143 1.2377 -4.0911 30 1 3.7834 3.2958 -0.5879 31 1 3.6504 7.1153 1.0250 32 1 1.6184 5.0525 4.3553 33 1 1.0359 7.9673 5.0493 34 1 0.7980 6.5752 6.1324 35 1 2.4391 7.0271 5.6109 36 1 -0.8018 5.5747 4.4953 37 1 -0.5642 6.9666 3.4120 38 1 -0.3009 5.3133 2.8072 39 1 1.4028 4.0059 2.9145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163483793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:50 Heat of formation + Delta-G solvation = -42.273307 kcal Electronic energy + Delta-G solvation = -22161.977491 eV Core-core repulsion = 18877.100130 eV Total energy + Delta-G solvation = -3284.877361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94342 -40.64266 -39.21694 -37.16573 -34.35552 -34.20669 -33.46355 -32.08727 -30.67810 -28.21326 -27.17701 -25.89248 -24.73073 -23.99604 -22.04762 -21.29517 -19.88215 -18.64192 -18.04944 -17.90425 -17.45996 -16.87112 -16.58955 -16.09394 -15.81672 -15.28742 -15.13898 -14.91700 -14.54433 -14.44316 -14.11779 -13.92402 -13.79250 -13.44239 -13.33131 -13.14746 -13.07494 -12.81241 -12.77320 -12.51309 -12.02009 -11.94383 -11.73429 -11.66549 -11.39408 -10.83903 -10.75299 -10.37401 -9.82755 -9.37626 -8.53096 -6.20794 -0.22756 0.24750 1.18528 1.33014 1.42660 1.84131 2.08506 2.14265 2.42474 2.74492 2.98159 3.56723 3.62950 3.79220 3.84832 3.95787 3.98564 4.07888 4.14945 4.20614 4.33622 4.44602 4.54479 4.68098 4.75625 4.77581 4.84053 4.87178 4.91395 4.96198 5.11879 5.18969 5.20929 5.27337 5.39539 5.52465 5.97711 6.15299 6.23364 6.83385 6.96178 7.24420 7.60232 8.57966 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.005577 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.793808 B = 5019.104393 C = 5737.167423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 N -0.457 5.457 4 C -0.350 4.350 5 H 0.089 0.911 6 C 0.037 3.963 7 N -0.886 5.886 8 Si 0.929 3.071 9 H -0.249 1.249 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.516 3.484 13 O -0.611 6.611 14 C -0.137 4.137 15 C 0.099 3.901 16 N -0.472 5.472 17 C 0.082 3.918 18 C 0.072 3.928 19 O -0.305 6.305 20 C 0.062 3.938 21 C -0.140 4.140 22 C -0.178 4.178 23 C -0.126 4.126 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.284 0.716 30 H 0.176 0.824 31 H 0.191 0.809 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 5.771 11.687 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 N -0.176 5.176 4 C -0.477 4.477 5 H 0.106 0.894 6 C -0.170 4.170 7 N -0.521 5.521 8 Si 0.754 3.246 9 H -0.175 1.175 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.306 3.694 13 O -0.498 6.498 14 C -0.142 4.142 15 C -0.058 4.058 16 N -0.181 5.181 17 C -0.077 4.077 18 C 0.025 3.975 19 O -0.218 6.218 20 C 0.006 3.994 21 C -0.197 4.197 22 C -0.235 4.235 23 C -0.153 4.153 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.193 0.807 31 H 0.208 0.792 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.248 5.940 11.319 13.189 hybrid contribution -0.272 -1.307 0.231 1.355 sum -3.519 4.632 11.550 12.932 Atomic orbital electron populations 1.21923 0.94001 1.03048 1.01540 1.21908 0.96693 0.83838 1.01552 1.43724 1.55955 1.12456 1.05484 1.19028 1.38461 0.98857 0.91381 0.89401 1.25843 0.95822 1.01023 0.94265 1.69737 1.40029 1.41085 1.01247 0.86152 0.78887 0.80750 0.78778 1.17481 1.20911 1.19452 1.18319 0.80492 0.87099 0.83458 1.90597 1.57249 1.70419 1.31517 1.20763 1.01021 0.94748 0.97641 1.23863 0.93780 0.91898 0.96219 1.67901 1.22965 1.03564 1.23674 1.22857 0.94380 1.01249 0.89233 1.19899 0.96427 0.88563 0.92653 1.86117 1.67322 1.34174 1.34178 1.22800 0.91007 0.99177 0.86377 1.21854 1.03590 0.99739 0.94514 1.22371 0.95306 1.03287 1.02530 1.21817 1.01696 0.92417 0.99358 0.93355 0.92835 0.89223 0.91059 0.91039 0.90594 0.80707 0.79200 0.91508 0.90789 0.88365 0.91637 0.88810 0.90656 0.94058 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 10.20 71.98 0.73 -4.57 16 2 C 0.08 3.46 4.65 86.38 0.40 3.86 16 3 N -0.46 -21.81 2.18 -638.93 -1.39 -23.20 16 4 C -0.35 -17.81 6.70 84.10 0.56 -17.25 16 5 H 0.09 4.87 6.27 -2.91 -0.02 4.85 16 6 C 0.04 1.86 5.37 84.96 0.46 2.31 16 7 N -0.89 -47.30 13.95 21.68 0.30 -47.00 16 8 Si 0.93 40.17 24.88 68.60 1.71 41.88 16 9 H -0.25 -9.86 6.54 99.48 0.65 -9.21 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 C 0.52 24.68 7.38 86.75 0.64 25.32 16 13 O -0.61 -30.48 16.46 -4.00 -0.07 -30.55 16 14 C -0.14 -5.99 5.53 -20.01 -0.11 -6.10 16 15 C 0.10 4.39 8.90 85.06 0.76 5.15 16 16 N -0.47 -18.99 10.34 -194.31 -2.01 -21.00 16 17 C 0.08 2.72 11.13 84.82 0.94 3.67 16 18 C 0.07 2.37 6.62 22.56 0.15 2.52 16 19 O -0.30 -8.34 9.81 -92.63 -0.91 -9.25 16 20 C 0.06 1.36 2.85 30.60 0.09 1.45 16 21 C -0.14 -2.12 9.56 71.98 0.69 -1.43 16 22 C -0.18 -3.61 9.20 71.98 0.66 -2.95 16 23 C -0.13 -4.67 7.92 22.84 0.18 -4.49 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.07 2.99 3.20 -2.39 -0.01 2.98 16 28 H 0.07 2.97 7.52 -2.39 -0.02 2.95 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.18 8.56 5.41 -2.91 -0.02 8.55 16 31 H 0.19 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.07 1.59 6.32 -2.39 -0.02 1.57 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.03 6.98 -2.38 -0.02 1.01 16 39 H 0.15 5.17 5.56 -2.91 -0.02 5.15 16 Total: -1.00 -60.85 317.13 4.80 -56.05 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.01 Total: 25.57 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.15 Total: 7.49 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -3.10 Total: -91.20 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.97 Total: -39.79 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.71 Total: 41.88 kcal Total: -60.85 4.80 -56.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163483793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.779 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds