Wall clock time and date at job start Tue Mar 31 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99991 * 2 1 4 4 C 1.46904 * 111.00016 * 123.95418 * 2 1 3 5 5 C 1.50702 * 109.47090 * 66.05150 * 4 2 1 6 6 O 1.21277 * 119.99960 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99776 * 180.02562 * 5 4 2 8 8 C 1.46508 * 120.00011 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47103 * 179.97438 * 8 7 5 10 10 C 1.38299 * 119.93247 * 90.00118 * 9 8 7 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08994 * 109.47321 * 296.04367 * 1 2 3 25 25 H 1.08997 * 109.47495 * 56.04762 * 1 2 3 26 26 H 1.09007 * 109.46875 * 176.04822 * 1 2 3 27 27 H 1.09004 * 109.47526 * 183.95078 * 3 2 1 28 28 H 1.08997 * 109.47519 * 303.95337 * 3 2 1 29 29 H 1.09007 * 109.47080 * 63.95434 * 3 2 1 30 30 H 1.08998 * 109.47361 * 306.04442 * 4 2 1 31 31 H 1.09005 * 109.47059 * 186.04535 * 4 2 1 32 32 H 0.97001 * 120.00514 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46632 * 59.99915 * 8 7 5 34 34 H 1.08996 * 109.47144 * 299.99646 * 8 7 5 35 35 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 36 36 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 37 37 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 39 39 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6370 -2.2205 0.9728 6 8 1.0049 -2.5831 0.0034 7 7 2.0181 -3.1180 1.9032 8 6 1.6692 -4.5319 1.7433 9 6 2.2094 -5.3176 2.9102 10 6 1.4344 -5.4928 4.0422 11 6 1.9263 -6.2128 5.1131 12 6 3.2010 -6.7608 5.0526 13 8 3.6872 -7.4695 6.1034 14 6 2.8422 -7.7025 7.1279 15 1 1.8562 -7.2620 7.1256 16 6 3.2393 -8.5077 8.1846 17 7 4.4403 -9.0448 8.1873 18 14 2.0685 -8.8311 9.6037 19 1 1.2581 -10.0407 9.3111 20 1 2.8479 -9.0468 10.8492 21 1 1.1685 -7.6630 9.7790 22 6 3.9793 -6.5778 3.9170 23 6 3.4794 -5.8616 2.8472 24 1 -0.3633 0.4512 0.9232 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7043 1.8723 0.9234 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.5234 -2.8279 2.6787 33 1 2.1036 -4.9108 0.8182 34 1 0.5850 -4.6365 1.7051 35 1 0.4431 -5.0667 4.0884 36 1 1.3204 -6.3495 5.9965 37 1 4.7182 -9.6078 8.9266 38 1 4.9726 -6.9990 3.8688 39 1 4.0824 -5.7228 1.9621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170784254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:49 Heat of formation + Delta-G solvation = -29.848753 kcal Electronic energy + Delta-G solvation = -20487.947774 eV Core-core repulsion = 17203.609182 eV Total energy + Delta-G solvation = -3284.338592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.90793 -39.09279 -37.19431 -36.54969 -34.36928 -32.39651 -30.46189 -30.25408 -28.46731 -27.74219 -25.83829 -24.67417 -22.49869 -22.07580 -20.64724 -20.33267 -18.09942 -17.43265 -16.95454 -16.22956 -15.95050 -15.06447 -14.93735 -14.79968 -14.56197 -14.42525 -14.04350 -13.68265 -13.55640 -13.00571 -12.92007 -12.80615 -12.60732 -12.32262 -12.06257 -11.92330 -11.76568 -11.57215 -11.40781 -10.97995 -10.80991 -10.71943 -10.50407 -9.78693 -9.45098 -8.96352 -8.92864 -8.58053 -8.30849 -7.34603 -6.54877 -4.13827 2.04216 2.10716 2.66823 3.05729 3.07984 3.12727 3.20766 3.87100 3.88797 4.46707 4.74669 4.83726 4.99330 5.01866 5.06025 5.12228 5.15343 5.24923 5.37664 5.38438 5.41460 5.55646 5.64224 5.78611 5.89510 5.93378 6.10093 6.32819 6.51671 6.58152 6.62718 6.74923 6.78284 6.93678 7.12115 7.25113 7.33046 7.60887 7.69891 7.89771 8.29532 8.90447 9.58509 10.62648 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035973 B = 0.002766 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.169231 B =10122.037363 C =10351.941950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.530 5.530 3 C 0.024 3.976 4 C 0.033 3.967 5 C 0.509 3.491 6 O -0.530 6.530 7 N -0.724 5.724 8 C 0.181 3.819 9 C -0.215 4.215 10 C -0.051 4.051 11 C -0.237 4.237 12 C 0.160 3.840 13 O -0.173 6.173 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.195 4.195 23 C -0.054 4.054 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.272 0.728 38 H 0.118 0.882 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 15.351 -9.779 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.254 5.254 3 C -0.124 4.124 4 C -0.098 4.098 5 C 0.295 3.705 6 O -0.407 6.407 7 N -0.377 5.377 8 C 0.058 3.942 9 C -0.216 4.216 10 C -0.070 4.070 11 C -0.256 4.256 12 C 0.105 3.895 13 O -0.076 6.076 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.214 4.214 23 C -0.073 4.073 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.707 14.586 -10.707 18.696 hybrid contribution -0.585 0.361 1.960 2.077 sum -5.291 14.947 -8.747 18.108 Atomic orbital electron populations 1.22580 0.86449 1.04228 0.99767 1.61638 1.08985 1.13230 1.41563 1.22429 1.00870 0.88395 1.00682 1.22032 1.02173 0.92059 0.93525 1.20481 0.79653 0.87661 0.82733 1.90655 1.39406 1.80561 1.30054 1.46347 1.57557 1.08405 1.25343 1.19953 0.99329 0.78591 0.96289 1.19216 0.96860 1.08625 0.96920 1.20637 0.97946 0.96112 0.92293 1.21159 0.97694 1.05978 1.00813 1.19444 0.91614 0.90367 0.88033 1.83978 1.38628 1.61280 1.23683 1.21356 0.97288 1.31204 0.97140 0.88922 1.25324 0.97116 0.95486 0.98544 1.70033 1.17640 1.29791 1.31873 0.85691 0.79097 0.79219 0.79319 1.19773 1.20180 1.19146 1.20218 1.01108 1.07143 0.92974 1.20539 0.94273 0.95583 0.96906 0.96184 0.91487 0.89204 0.91206 0.91011 0.95603 0.91921 0.87856 0.76495 0.91535 0.91686 0.87449 0.85432 0.91856 0.86360 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.21 60.06 0.55 0.73 16 2 N -0.53 -5.55 4.76 -252.72 -1.20 -6.75 16 3 C 0.02 0.18 9.57 60.06 0.57 0.76 16 4 C 0.03 0.32 5.45 -4.97 -0.03 0.29 16 5 C 0.51 6.46 7.55 -10.99 -0.08 6.38 16 6 O -0.53 -8.65 14.31 5.56 0.08 -8.57 16 7 N -0.72 -8.66 5.55 -61.47 -0.34 -9.00 16 8 C 0.18 2.48 5.80 -5.19 -0.03 2.45 16 9 C -0.21 -3.38 5.25 -104.58 -0.55 -3.93 16 10 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 11 C -0.24 -4.85 9.17 -39.39 -0.36 -5.21 16 12 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 13 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 14 C -0.39 -10.64 9.49 30.89 0.29 -10.34 16 15 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -24.54 13.67 55.48 0.76 -23.79 16 18 Si 0.94 19.90 29.55 -169.99 -5.02 14.87 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 23 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 26 H 0.09 1.13 5.88 -51.92 -0.31 0.82 16 27 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.03 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.10 0.81 8.06 -51.93 -0.42 0.39 16 32 H 0.40 4.14 8.46 -40.82 -0.35 3.80 16 33 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -31.34 332.59 -7.28 -38.62 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.41 Total: 5.64 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.15 Total: -11.28 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.78 Total: -39.54 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.34 -7.28 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170784254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.771 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds