Wall clock time and date at job start Tue Mar 31 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99991 * 2 1 4 4 C 1.46904 * 111.00016 * 123.95418 * 2 1 3 5 5 C 1.50702 * 109.47090 * 66.05150 * 4 2 1 6 6 O 1.21277 * 119.99960 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99776 * 180.02562 * 5 4 2 8 8 C 1.46508 * 120.00011 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47103 * 179.97438 * 8 7 5 10 10 C 1.38299 * 119.93247 * 90.00118 * 9 8 7 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47448 * 89.99502 * 18 16 14 20 20 H 1.48501 * 109.47175 * 209.99712 * 18 16 14 21 21 H 1.48506 * 109.47415 * 329.99678 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.08994 * 109.47321 * 296.04367 * 1 2 3 25 25 H 1.08997 * 109.47495 * 56.04762 * 1 2 3 26 26 H 1.09007 * 109.46875 * 176.04822 * 1 2 3 27 27 H 1.09004 * 109.47526 * 183.95078 * 3 2 1 28 28 H 1.08997 * 109.47519 * 303.95337 * 3 2 1 29 29 H 1.09007 * 109.47080 * 63.95434 * 3 2 1 30 30 H 1.08998 * 109.47361 * 306.04442 * 4 2 1 31 31 H 1.09005 * 109.47059 * 186.04535 * 4 2 1 32 32 H 0.97001 * 120.00514 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46632 * 59.99915 * 8 7 5 34 34 H 1.08996 * 109.47144 * 299.99646 * 8 7 5 35 35 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 36 36 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 37 37 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 39 39 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6370 -2.2205 0.9728 6 8 1.0049 -2.5831 0.0034 7 7 2.0181 -3.1180 1.9032 8 6 1.6692 -4.5319 1.7433 9 6 2.2094 -5.3176 2.9102 10 6 1.4344 -5.4928 4.0422 11 6 1.9263 -6.2128 5.1131 12 6 3.2010 -6.7608 5.0526 13 8 3.6872 -7.4695 6.1034 14 6 2.8422 -7.7025 7.1279 15 1 1.8562 -7.2620 7.1256 16 6 3.2393 -8.5077 8.1846 17 7 4.4403 -9.0448 8.1873 18 14 2.0685 -8.8311 9.6037 19 1 1.2581 -10.0407 9.3111 20 1 2.8479 -9.0468 10.8492 21 1 1.1685 -7.6630 9.7790 22 6 3.9793 -6.5778 3.9170 23 6 3.4794 -5.8616 2.8472 24 1 -0.3633 0.4512 0.9232 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7043 1.8723 0.9234 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.5234 -2.8279 2.6787 33 1 2.1036 -4.9108 0.8182 34 1 0.5850 -4.6365 1.7051 35 1 0.4431 -5.0667 4.0884 36 1 1.3204 -6.3495 5.9965 37 1 4.7182 -9.6078 8.9266 38 1 4.9726 -6.9990 3.8688 39 1 4.0824 -5.7228 1.9621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170784254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:49 Heat of formation + Delta-G solvation = -52.710302 kcal Electronic energy + Delta-G solvation = -20488.939125 eV Core-core repulsion = 17203.609182 eV Total energy + Delta-G solvation = -3285.329943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.05581 -40.58656 -38.59666 -37.54949 -35.57497 -34.27765 -31.87897 -31.67864 -29.44736 -28.40912 -27.58042 -26.06429 -23.64725 -23.32657 -22.11110 -21.31712 -19.87333 -18.91511 -18.20264 -17.23269 -16.85258 -16.41435 -16.32333 -15.92037 -15.79372 -15.58118 -15.46706 -15.25809 -14.93768 -14.39971 -14.23814 -13.90090 -13.70721 -13.41810 -13.20490 -13.03674 -12.80084 -12.65375 -12.57145 -12.41910 -12.32957 -12.24098 -12.10871 -11.20597 -10.90167 -10.73209 -10.02427 -9.80991 -9.29154 -9.00170 -8.48606 -6.16804 0.54557 0.57594 1.35853 1.44206 1.52802 1.70497 2.16873 2.22029 2.83470 3.10546 3.20566 3.49219 3.82805 3.96214 4.02813 4.17342 4.20516 4.36459 4.40208 4.46610 4.51343 4.56884 4.72092 4.73852 4.77511 4.80935 5.04304 5.05156 5.10856 5.14229 5.26645 5.48906 5.53317 5.69023 5.75268 5.92072 6.01253 6.08539 6.16055 6.66028 6.96290 7.33467 7.75652 8.74260 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035973 B = 0.002766 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.169231 B =10122.037363 C =10351.941950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.554 5.554 3 C 0.025 3.975 4 C 0.037 3.963 5 C 0.509 3.491 6 O -0.569 6.569 7 N -0.717 5.717 8 C 0.186 3.814 9 C -0.181 4.181 10 C -0.046 4.046 11 C -0.243 4.243 12 C 0.122 3.878 13 O -0.229 6.229 14 C -0.414 4.414 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.018 2.982 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.204 4.204 23 C -0.044 4.044 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.412 0.588 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.273 0.727 38 H 0.115 0.885 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 17.753 -10.896 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.279 5.279 3 C -0.122 4.122 4 C -0.093 4.093 5 C 0.296 3.704 6 O -0.448 6.448 7 N -0.370 5.370 8 C 0.063 3.937 9 C -0.183 4.183 10 C -0.064 4.064 11 C -0.263 4.263 12 C 0.071 3.929 13 O -0.135 6.135 14 C -0.490 4.490 15 H 0.121 0.879 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.223 4.223 23 C -0.062 4.062 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.248 0.752 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.071 17.044 -11.859 21.633 hybrid contribution -0.217 -0.167 1.931 1.951 sum -6.288 16.876 -9.928 20.565 Atomic orbital electron populations 1.22481 0.86779 1.02699 1.00705 1.61616 1.08998 1.14973 1.42325 1.22469 1.01362 0.86910 1.01456 1.22067 1.03531 0.89603 0.94140 1.21040 0.78614 0.88883 0.81851 1.90653 1.41120 1.81343 1.31655 1.46163 1.57518 1.07513 1.25779 1.19828 0.99448 0.79382 0.95022 1.19501 0.95847 1.06210 0.96693 1.20933 0.99295 0.94910 0.91303 1.21244 0.96804 1.06420 1.01803 1.20001 0.93399 0.91197 0.88326 1.83948 1.40028 1.64241 1.25300 1.21833 0.97873 1.31617 0.97644 0.87897 1.26584 0.98951 0.95047 1.01390 1.70176 1.20159 1.31986 1.33366 0.84594 0.76804 0.79573 0.75317 1.18969 1.19670 1.17509 1.20450 1.01050 1.07701 0.93145 1.20882 0.94804 0.93815 0.96717 0.95089 0.90761 0.91870 0.90275 0.90577 0.94526 0.89972 0.85722 0.75243 0.91184 0.91384 0.84349 0.86198 0.91794 0.86684 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.21 127.69 1.18 1.57 16 2 N -0.55 -10.11 4.76 -953.47 -4.53 -14.64 16 3 C 0.03 0.30 9.57 127.69 1.22 1.52 16 4 C 0.04 0.59 5.45 85.56 0.47 1.05 16 5 C 0.51 11.41 7.55 87.66 0.66 12.07 16 6 O -0.57 -17.44 14.31 -3.02 -0.04 -17.48 16 7 N -0.72 -14.50 5.55 -466.80 -2.59 -17.09 16 8 C 0.19 4.42 5.80 85.63 0.50 4.91 16 9 C -0.18 -5.10 5.25 -19.84 -0.10 -5.20 16 10 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 11 C -0.24 -9.89 9.17 22.39 0.21 -9.68 16 12 C 0.12 5.74 6.65 22.58 0.15 5.89 16 13 O -0.23 -13.32 9.76 -22.72 -0.22 -13.54 16 14 C -0.41 -23.35 9.49 67.92 0.64 -22.71 16 15 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 16 C -0.02 -1.21 5.49 84.84 0.47 -0.75 16 17 N -0.92 -55.32 13.67 21.62 0.30 -55.03 16 18 Si 1.02 41.72 29.55 68.60 2.03 43.75 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 22 C -0.20 -8.10 9.99 22.39 0.22 -7.88 16 23 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 24 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 26 H 0.06 1.51 5.88 -2.38 -0.01 1.50 16 27 H 0.08 0.78 8.12 -2.38 -0.02 0.76 16 28 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 29 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.12 1.43 8.06 -2.38 -0.02 1.41 16 32 H 0.41 6.82 8.46 -92.71 -0.78 6.04 16 33 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 35 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.12 4.99 5.64 -2.91 -0.02 4.98 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -72.47 332.59 1.25 -71.22 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.28 Total: 24.35 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 6.04 Total: -21.53 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -6.83 Total: -86.76 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.26 Total: -31.03 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.47 1.25 -71.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170784254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.508 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds