Wall clock time and date at job start Tue Mar 31 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47207 * 2 1 4 4 C 1.35421 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80378 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80257 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18462 * 0.02562 * 6 5 4 8 8 C 1.38330 * 119.45920 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.34907 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.59541 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99992 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00358 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46944 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46896 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99791 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00330 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46658 * 90.00303 * 20 18 16 22 22 H 1.48497 * 109.47112 * 210.00036 * 20 18 16 23 23 H 1.48496 * 109.47225 * 330.00375 * 20 18 16 24 24 H 1.08998 * 109.46748 * 299.99869 * 1 2 3 25 25 H 1.08991 * 109.47057 * 59.99945 * 1 2 3 26 26 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46700 * 239.99653 * 2 1 3 28 28 H 1.09004 * 109.46858 * 120.00264 * 2 1 3 29 29 H 1.07996 * 119.40488 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.26917 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.82649 * 180.02562 * 8 7 6 32 32 H 0.97005 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47098 * 300.00153 * 13 12 10 34 34 H 1.09005 * 109.47166 * 59.99913 * 13 12 10 35 35 H 1.08990 * 109.46699 * 300.00278 * 14 13 12 36 36 H 1.09000 * 109.46895 * 60.00274 * 14 13 12 37 37 H 1.08996 * 109.47506 * 300.00440 * 15 14 13 38 38 H 1.09000 * 109.46968 * 60.00482 * 15 14 13 39 39 H 0.96995 * 120.00288 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8474 0.0011 8 6 5.2715 2.9821 0.0011 9 6 3.8806 2.8228 0.0011 10 6 2.9901 3.9989 0.0006 11 8 1.7836 3.8480 0.0010 12 7 3.5139 5.2408 -0.0005 13 6 2.6296 6.4088 -0.0016 14 6 3.4717 7.6861 -0.0032 15 6 2.5481 8.9059 -0.0050 16 6 3.3777 10.1641 -0.0060 17 1 4.4558 10.1000 -0.0059 18 6 2.7602 11.3969 -0.0082 19 7 1.4474 11.4748 -0.0090 20 14 3.7885 12.9564 -0.0088 21 1 4.0626 13.3680 -1.4090 22 1 3.0478 14.0379 0.6891 23 1 5.0724 12.7031 0.6931 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 6.0819 -0.2852 0.0009 30 1 7.1391 1.9342 0.0007 31 1 5.7157 3.9665 0.0011 32 1 4.4764 5.3612 -0.0005 33 1 2.0006 6.3875 -0.8916 34 1 2.0004 6.3890 0.8884 35 1 4.1009 7.7076 0.8865 36 1 4.1004 7.7056 -0.8934 37 1 1.9192 8.8842 -0.8950 38 1 1.9191 8.8866 0.8849 39 1 1.0131 12.3421 -0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:08 Heat of formation + Delta-G solvation = -54.357326 kcal Electronic energy + Delta-G solvation = -20632.451362 eV Core-core repulsion = 17347.049999 eV Total energy + Delta-G solvation = -3285.401363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.05847 -39.00525 -38.17992 -35.36657 -33.52357 -32.80573 -32.21620 -31.10852 -30.15807 -26.85689 -24.92919 -24.13810 -22.77440 -22.48352 -20.74965 -20.20959 -18.78410 -17.49010 -17.14813 -16.49596 -16.32788 -15.37964 -15.23542 -15.22858 -14.49438 -14.27749 -14.25881 -14.04881 -13.54851 -13.24779 -12.84752 -12.58063 -12.53423 -12.27296 -11.83597 -11.71137 -11.65895 -10.94805 -10.90606 -10.73224 -10.59931 -10.22746 -10.22484 -9.86332 -9.77702 -9.35088 -9.11302 -8.86585 -8.63519 -8.37244 -6.01746 -4.04954 0.46883 0.97344 2.80899 2.92056 3.30565 3.30987 3.37208 3.40047 3.68869 3.99837 4.43848 4.44957 4.58059 4.72090 4.84950 4.85090 4.95958 5.16026 5.21627 5.34025 5.48996 5.53926 5.69395 5.72828 5.76439 5.79238 5.92801 6.07336 6.17393 6.49088 6.60524 6.83597 7.00504 7.07526 7.47364 7.63772 7.72829 7.76542 7.97054 8.37155 8.42967 9.01760 9.59234 11.09569 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002967 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.113346 B = 9435.814186 C =10413.574392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.268 6.268 4 C 0.373 3.627 5 N -0.548 5.548 6 C 0.162 3.838 7 C -0.222 4.222 8 C -0.009 4.009 9 C -0.206 4.206 10 C 0.556 3.444 11 O -0.518 6.518 12 N -0.724 5.724 13 C 0.118 3.882 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.395 0.605 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 -24.197 0.023 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.172 6.172 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.005 3.995 7 C -0.242 4.242 8 C -0.035 4.035 9 C -0.212 4.212 10 C 0.341 3.659 11 O -0.394 6.394 12 N -0.375 5.375 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.181 0.819 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.332 -24.791 0.029 25.587 hybrid contribution 1.535 1.577 -0.012 2.200 sum 7.866 -23.215 0.016 24.511 Atomic orbital electron populations 1.21791 0.92750 1.02494 1.03921 1.22695 0.95304 0.81250 1.02168 1.86554 1.15469 1.29803 1.85387 1.19838 0.84725 0.88448 0.87735 1.67491 1.06635 1.32452 1.20650 1.22643 0.89185 0.97644 0.90032 1.21924 1.01733 0.92929 1.07616 1.21703 0.91231 1.00154 0.90420 1.20175 0.94354 0.92674 1.14010 1.17784 0.87807 0.82650 0.77630 1.90835 1.14150 1.85818 1.48640 1.46090 1.10539 1.05771 1.75148 1.21662 0.93077 0.83524 1.02163 1.21894 0.99199 0.93945 1.00847 1.19029 0.94413 0.90249 0.97706 1.21203 0.92995 0.90934 1.50963 0.92651 1.25030 0.94907 0.99242 0.95284 1.69960 1.08040 1.24723 1.50530 0.86584 0.80247 0.83006 0.78091 1.20662 1.21204 1.19900 0.91410 0.91404 0.90484 0.91697 0.91697 0.81949 0.83855 0.83627 0.77105 0.91622 0.91615 0.92716 0.92723 0.96238 0.96233 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.67 6.03 37.16 0.22 0.89 16 3 O -0.27 -4.00 8.22 -39.73 -0.33 -4.33 16 4 C 0.37 5.15 7.51 -16.61 -0.12 5.03 16 5 N -0.55 -6.30 9.21 -12.98 -0.12 -6.42 16 6 C 0.16 1.33 11.17 -17.49 -0.20 1.13 16 7 C -0.22 -1.64 10.09 -39.50 -0.40 -2.04 16 8 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 9 C -0.21 -2.75 5.90 -104.69 -0.62 -3.37 16 10 C 0.56 9.10 7.77 -12.47 -0.10 9.00 16 11 O -0.52 -10.49 15.19 -16.49 -0.25 -10.74 16 12 N -0.72 -10.76 5.51 -61.35 -0.34 -11.10 16 13 C 0.12 2.12 5.67 -4.04 -0.02 2.09 16 14 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.15 0.99 6.52 -52.49 -0.34 0.65 16 32 H 0.39 4.57 6.57 -40.82 -0.27 4.30 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -34.54 335.88 -7.82 -42.36 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.64 Total: -0.99 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.92 Total: -4.15 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.28 Total: -43.64 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.58 Total: -15.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.54 -7.82 -42.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.002 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds