Wall clock time and date at job start Tue Mar 31 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47207 * 2 1 4 4 C 1.35421 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80378 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80257 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18462 * 0.02562 * 6 5 4 8 8 C 1.38330 * 119.45920 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.34907 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.59541 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99992 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00358 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46944 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46896 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99791 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00330 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46658 * 90.00303 * 20 18 16 22 22 H 1.48497 * 109.47112 * 210.00036 * 20 18 16 23 23 H 1.48496 * 109.47225 * 330.00375 * 20 18 16 24 24 H 1.08998 * 109.46748 * 299.99869 * 1 2 3 25 25 H 1.08991 * 109.47057 * 59.99945 * 1 2 3 26 26 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46700 * 239.99653 * 2 1 3 28 28 H 1.09004 * 109.46858 * 120.00264 * 2 1 3 29 29 H 1.07996 * 119.40488 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.26917 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.82649 * 180.02562 * 8 7 6 32 32 H 0.97005 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47098 * 300.00153 * 13 12 10 34 34 H 1.09005 * 109.47166 * 59.99913 * 13 12 10 35 35 H 1.08990 * 109.46699 * 300.00278 * 14 13 12 36 36 H 1.09000 * 109.46895 * 60.00274 * 14 13 12 37 37 H 1.08996 * 109.47506 * 300.00440 * 15 14 13 38 38 H 1.09000 * 109.46968 * 60.00482 * 15 14 13 39 39 H 0.96995 * 120.00288 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8474 0.0011 8 6 5.2715 2.9821 0.0011 9 6 3.8806 2.8228 0.0011 10 6 2.9901 3.9989 0.0006 11 8 1.7836 3.8480 0.0010 12 7 3.5139 5.2408 -0.0005 13 6 2.6296 6.4088 -0.0016 14 6 3.4717 7.6861 -0.0032 15 6 2.5481 8.9059 -0.0050 16 6 3.3777 10.1641 -0.0060 17 1 4.4558 10.1000 -0.0059 18 6 2.7602 11.3969 -0.0082 19 7 1.4474 11.4748 -0.0090 20 14 3.7885 12.9564 -0.0088 21 1 4.0626 13.3680 -1.4090 22 1 3.0478 14.0379 0.6891 23 1 5.0724 12.7031 0.6931 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 6.0819 -0.2852 0.0009 30 1 7.1391 1.9342 0.0007 31 1 5.7157 3.9665 0.0011 32 1 4.4764 5.3612 -0.0005 33 1 2.0006 6.3875 -0.8916 34 1 2.0004 6.3890 0.8884 35 1 4.1009 7.7076 0.8865 36 1 4.1004 7.7056 -0.8934 37 1 1.9192 8.8842 -0.8950 38 1 1.9191 8.8866 0.8849 39 1 1.0131 12.3421 -0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171506974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:07 Heat of formation + Delta-G solvation = -78.656533 kcal Electronic energy + Delta-G solvation = -20633.505055 eV Core-core repulsion = 17347.049999 eV Total energy + Delta-G solvation = -3286.455056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94696 -40.23219 -39.04085 -36.95259 -35.24984 -33.97723 -33.00272 -32.72099 -31.04179 -28.63300 -25.95907 -25.27939 -24.21188 -23.29482 -22.32051 -21.57097 -19.66654 -18.70424 -18.36873 -17.96478 -17.40686 -16.67990 -16.64617 -16.36478 -15.98146 -15.46713 -15.40757 -14.90603 -14.74489 -14.37721 -14.04523 -13.75117 -13.54602 -13.51824 -13.34173 -13.31404 -12.74645 -12.54335 -12.48906 -12.37348 -11.76021 -11.67224 -11.59897 -11.25722 -11.13441 -11.04889 -10.60816 -10.54985 -10.15201 -9.54088 -8.18802 -6.30529 -0.35221 0.23550 1.42388 1.43948 1.54858 1.85115 1.99478 2.10180 2.43130 2.79868 3.15066 3.25247 3.70268 3.76760 3.97213 4.03858 4.11484 4.16957 4.21123 4.24053 4.38561 4.51581 4.54755 4.79200 4.87895 4.89342 4.94074 4.98277 5.08919 5.17202 5.17236 5.39790 5.45066 5.52871 5.70965 5.84656 6.22157 6.23928 6.52124 6.74539 6.87253 7.21596 7.39225 8.93482 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002967 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.113346 B = 9435.814186 C =10413.574392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.303 6.303 4 C 0.349 3.651 5 N -0.560 5.560 6 C 0.164 3.836 7 C -0.204 4.204 8 C -0.004 4.004 9 C -0.237 4.237 10 C 0.554 3.446 11 O -0.570 6.570 12 N -0.709 5.709 13 C 0.131 3.869 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.540 4.540 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.259 1.259 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.204 0.796 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.414 0.586 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.071 0.929 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 -25.105 0.024 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.209 6.209 4 C 0.169 3.831 5 N -0.285 5.285 6 C 0.007 3.993 7 C -0.224 4.224 8 C -0.030 4.030 9 C -0.243 4.243 10 C 0.341 3.659 11 O -0.450 6.450 12 N -0.362 5.362 13 C 0.008 3.992 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.578 4.578 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.183 1.183 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.221 0.779 30 H 0.205 0.795 31 H 0.190 0.810 32 H 0.252 0.748 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.009 0.991 38 H 0.010 0.990 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.314 -25.715 0.029 27.706 hybrid contribution 0.390 1.746 -0.014 1.789 sum 10.704 -23.969 0.016 26.251 Atomic orbital electron populations 1.21820 0.91982 1.04087 1.02674 1.22860 0.95958 0.80192 1.02629 1.86517 1.16812 1.31702 1.85829 1.20074 0.84690 0.89307 0.88993 1.67561 1.08084 1.31632 1.21230 1.23494 0.88305 0.99835 0.87630 1.22409 1.03606 0.91570 1.04784 1.22076 0.89449 1.02392 0.89045 1.20042 0.95646 0.91050 1.17546 1.18325 0.87685 0.83578 0.76263 1.90801 1.16540 1.86569 1.51042 1.45792 1.11131 1.04548 1.74776 1.21251 0.93025 0.84319 1.00651 1.21599 0.98153 0.91715 1.02360 1.18948 0.94724 0.92795 0.95018 1.21688 0.93874 0.91855 1.50385 0.91312 1.26046 0.96101 1.03277 0.94796 1.70115 1.10127 1.25694 1.51742 0.85399 0.78795 0.78101 0.78457 1.19816 1.21155 1.18255 0.92617 0.92610 0.87407 0.91125 0.91125 0.77916 0.79530 0.81019 0.74842 0.93319 0.93310 0.91069 0.91062 0.99056 0.99050 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.28 71.98 0.74 -2.14 16 2 C 0.06 1.32 6.03 71.98 0.43 1.75 16 3 O -0.30 -9.55 8.22 -66.34 -0.55 -10.09 16 4 C 0.35 9.69 7.51 85.13 0.64 10.32 16 5 N -0.56 -12.02 9.21 -308.01 -2.84 -14.86 16 6 C 0.16 2.07 11.17 84.71 0.95 3.02 16 7 C -0.20 -2.07 10.09 22.32 0.23 -1.84 16 8 C 0.00 -0.06 9.64 22.72 0.22 0.16 16 9 C -0.24 -6.20 5.90 -19.91 -0.12 -6.32 16 10 C 0.55 18.57 7.77 86.69 0.67 19.24 16 11 O -0.57 -24.53 15.19 16.80 0.26 -24.28 16 12 N -0.71 -20.84 5.51 -466.26 -2.57 -23.41 16 13 C 0.13 4.83 5.67 86.38 0.49 5.32 16 14 C -0.10 -3.87 5.27 30.60 0.16 -3.70 16 15 C 0.02 1.20 4.97 29.85 0.15 1.35 16 16 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 20 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 28 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 29 H 0.20 0.81 8.06 -2.91 -0.02 0.78 16 30 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.17 1.63 6.52 -2.91 -0.02 1.61 16 32 H 0.41 8.69 6.57 -92.70 -0.61 8.08 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -79.43 335.88 2.31 -77.12 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.44 Total: 9.60 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.25 Total: -2.50 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -5.12 Total: -95.57 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.29 Total: -34.37 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -79.43 2.31 -77.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.536 kcal (2) G-P(sol) polarization free energy of solvation -79.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds