Wall clock time and date at job start Tue Mar 31 2020 00:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21325 * 120.00132 * 2 1 4 4 C 1.46620 * 120.00257 * 180.02562 * 2 1 3 5 5 C 1.41578 * 126.51564 * 359.97438 * 4 2 1 6 6 C 1.36230 * 106.98461 * 180.02562 * 5 4 2 7 7 C 1.46842 * 125.80312 * 179.97438 * 6 5 4 8 8 O 1.21679 * 120.00307 * 184.99405 * 7 6 5 9 9 N 1.34775 * 120.00056 * 4.99234 * 7 6 5 10 10 C 1.46496 * 120.00492 * 185.10246 * 9 7 6 11 11 C 1.52995 * 109.47657 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47474 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47235 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00159 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99706 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47025 * 59.99905 * 17 15 13 19 19 H 1.48501 * 109.47353 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47043 * 299.99511 * 17 15 13 21 21 N 1.37845 * 108.39866 * 359.97438 * 6 5 4 22 22 C 1.46495 * 125.34614 * 180.02562 * 21 6 5 23 23 C 1.34112 * 109.30326 * 0.26692 * 21 6 5 24 24 H 1.09003 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46987 * 299.99850 * 1 2 3 26 26 H 1.09000 * 109.47231 * 60.00086 * 1 2 3 27 27 H 1.07999 * 126.50462 * 359.95707 * 5 4 2 28 28 H 0.96998 * 120.00160 * 5.09786 * 9 7 6 29 29 H 1.09005 * 109.46963 * 299.99907 * 10 9 7 30 30 H 1.09000 * 109.47319 * 59.99232 * 10 9 7 31 31 H 1.08993 * 109.47425 * 299.99982 * 11 10 9 32 32 H 1.09007 * 109.46973 * 59.99634 * 11 10 9 33 33 H 1.09005 * 109.47389 * 300.00266 * 12 11 10 34 34 H 1.09001 * 109.46997 * 60.00483 * 12 11 10 35 35 H 0.97003 * 119.99981 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.47147 * 84.41643 * 22 21 6 37 37 H 1.08997 * 109.47690 * 324.41209 * 22 21 6 38 38 H 1.08997 * 109.46850 * 204.41046 * 22 21 6 39 39 H 1.08002 * 125.82925 * 179.73441 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2402 -1.2697 -0.0006 5 6 1.6760 -2.5683 -0.0006 6 6 2.7124 -3.4524 -0.0007 7 6 2.5931 -4.9160 -0.0002 8 8 3.5899 -5.6077 0.0915 9 7 1.3793 -5.4931 -0.1013 10 6 1.2482 -6.9478 0.0114 11 6 -0.2229 -7.3405 -0.1377 12 6 -0.3597 -8.8599 -0.0207 13 6 -1.8087 -9.2466 -0.1682 14 1 -2.5573 -8.4849 -0.3289 15 6 -2.1790 -10.5728 -0.0970 16 7 -1.2675 -11.5004 0.0992 17 14 -3.9752 -11.0522 -0.2791 18 1 -4.4729 -10.6116 -1.6070 19 1 -4.1080 -12.5269 -0.1657 20 1 -4.7726 -10.3993 0.7901 21 7 3.8923 -2.7397 -0.0012 22 6 5.2356 -3.3243 -0.0019 23 6 3.6174 -1.4270 0.0044 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.6238 -2.8116 0.0004 28 1 0.5925 -4.9453 -0.2485 29 1 1.8339 -7.4272 -0.7731 30 1 1.6133 -7.2712 0.9862 31 1 -0.8083 -6.8612 0.6469 32 1 -0.5883 -7.0171 -1.1125 33 1 0.2255 -9.3390 -0.8057 34 1 0.0056 -9.1836 0.9539 35 1 -1.5279 -12.4335 0.1489 36 1 5.5283 -3.5608 -1.0249 37 1 5.2356 -4.2356 0.5960 38 1 5.9423 -2.6112 0.4225 39 1 4.3448 -0.6287 0.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171593532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:55 Heat of formation + Delta-G solvation = -45.893164 kcal Electronic energy + Delta-G solvation = -20451.844267 eV Core-core repulsion = 17166.809938 eV Total energy + Delta-G solvation = -3285.034330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.88493 -39.31120 -38.70611 -35.55823 -33.77000 -33.13559 -31.47236 -30.41512 -29.64639 -26.85335 -26.69960 -23.75515 -22.91619 -21.81004 -20.73375 -19.77116 -19.03139 -17.90905 -16.45013 -16.13405 -16.08481 -15.52229 -15.17004 -15.13151 -14.87339 -14.83384 -14.50258 -14.15476 -13.79959 -13.53285 -12.73359 -12.62068 -12.60242 -12.38123 -12.28941 -12.21546 -11.89131 -11.79193 -10.91301 -10.78957 -10.65960 -10.16429 -9.91779 -9.90141 -9.46674 -9.19082 -9.17469 -8.99649 -8.55773 -8.39986 -6.04822 -4.08183 1.13920 1.31535 2.30524 2.90623 3.29625 3.30249 3.31512 3.35312 3.37507 4.03552 4.41709 4.51472 4.57185 4.66708 4.85095 4.93354 4.97009 5.23666 5.27325 5.31066 5.36966 5.42486 5.56673 5.64211 5.69990 5.86215 6.08240 6.23348 6.35839 6.51572 6.53011 6.71990 6.76735 6.93820 7.46672 7.55931 7.59266 7.71394 7.93388 8.19125 8.34500 8.98256 9.56251 11.06433 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.002967 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.733417 B = 9435.611179 C =10608.785870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.428 3.572 3 O -0.484 6.484 4 C -0.270 4.270 5 C -0.095 4.095 6 C -0.050 4.050 7 C 0.581 3.419 8 O -0.550 6.550 9 N -0.711 5.711 10 C 0.119 3.881 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.398 5.398 22 C 0.061 3.939 23 C 0.091 3.909 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.401 0.599 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 20.782 -0.277 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.308 3.692 3 O -0.361 6.361 4 C -0.278 4.278 5 C -0.119 4.119 6 C -0.161 4.161 7 C 0.368 3.632 8 O -0.430 6.430 9 N -0.361 5.361 10 C -0.004 4.004 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.069 5.069 22 C -0.080 4.080 23 C -0.051 4.051 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.173 0.827 28 H 0.235 0.765 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.563 20.361 -0.176 22.496 hybrid contribution -1.346 -0.223 -0.169 1.375 sum 8.217 20.138 -0.345 21.752 Atomic orbital electron populations 1.22132 0.93812 1.04775 1.04539 1.21573 0.91223 0.86372 0.69993 1.90532 1.72252 1.34371 1.38994 1.20222 0.92991 0.94902 1.19638 1.21340 0.98241 0.90977 1.01387 1.19926 0.85466 0.92777 1.17918 1.17015 0.84165 0.85044 0.77005 1.90783 1.36444 1.64502 1.51280 1.45893 1.08025 1.09711 1.72477 1.21719 0.99647 0.76940 1.02064 1.21906 0.91537 1.01503 1.00999 1.19021 0.97182 0.87493 0.97621 1.21162 0.92995 0.92242 1.49826 0.92638 1.25028 0.97482 0.96703 0.95214 1.69954 1.33094 1.00714 1.49539 0.86636 0.85215 0.77338 0.78675 1.20219 1.21279 1.20207 1.43694 1.07018 1.05571 1.50620 1.22432 0.79300 1.01312 1.04941 1.22578 0.96891 0.85001 1.00644 0.89915 0.89055 0.89046 0.82699 0.76458 0.91423 0.91526 0.92549 0.92561 0.96257 0.96261 0.92840 0.89959 0.87361 0.89483 0.80118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 10.28 36.01 0.37 -0.95 16 2 C 0.43 4.32 7.24 -30.93 -0.22 4.09 16 3 O -0.48 -6.34 17.65 5.52 0.10 -6.24 16 4 C -0.27 -2.74 6.11 -105.10 -0.64 -3.39 16 5 C -0.09 -0.93 9.60 -39.03 -0.37 -1.31 16 6 C -0.05 -0.59 6.81 -82.40 -0.56 -1.15 16 7 C 0.58 8.32 7.78 -12.78 -0.10 8.22 16 8 O -0.55 -9.47 14.68 5.21 0.08 -9.39 16 9 N -0.71 -9.60 5.53 -61.57 -0.34 -9.94 16 10 C 0.12 1.96 5.68 -4.05 -0.02 1.94 16 11 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 N -0.40 -4.14 3.12 -120.05 -0.37 -4.52 16 22 C 0.06 0.50 10.43 59.84 0.62 1.12 16 23 C 0.09 0.87 11.16 -16.42 -0.18 0.69 16 24 H 0.08 0.44 6.50 -51.93 -0.34 0.10 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.16 1.10 6.50 -52.49 -0.34 0.76 16 28 H 0.40 4.27 7.35 -40.82 -0.30 3.97 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 1.10 6.47 -51.93 -0.34 0.76 16 38 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 39 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -33.85 337.33 -7.05 -40.90 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.50 Total: -0.56 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.80 Total: -5.76 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.02 Total: -40.14 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.17 Total: -15.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.85 -7.05 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.988 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds