Wall clock time and date at job start Tue Mar 31 2020 00:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21325 * 120.00132 * 2 1 4 4 C 1.46620 * 120.00257 * 180.02562 * 2 1 3 5 5 C 1.41578 * 126.51564 * 359.97438 * 4 2 1 6 6 C 1.36230 * 106.98461 * 180.02562 * 5 4 2 7 7 C 1.46842 * 125.80312 * 179.97438 * 6 5 4 8 8 O 1.21679 * 120.00307 * 184.99405 * 7 6 5 9 9 N 1.34775 * 120.00056 * 4.99234 * 7 6 5 10 10 C 1.46496 * 120.00492 * 185.10246 * 9 7 6 11 11 C 1.52995 * 109.47657 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47474 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47235 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00109 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00159 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99706 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47025 * 59.99905 * 17 15 13 19 19 H 1.48501 * 109.47353 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47043 * 299.99511 * 17 15 13 21 21 N 1.37845 * 108.39866 * 359.97438 * 6 5 4 22 22 C 1.46495 * 125.34614 * 180.02562 * 21 6 5 23 23 C 1.34112 * 109.30326 * 0.26692 * 21 6 5 24 24 H 1.09003 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46987 * 299.99850 * 1 2 3 26 26 H 1.09000 * 109.47231 * 60.00086 * 1 2 3 27 27 H 1.07999 * 126.50462 * 359.95707 * 5 4 2 28 28 H 0.96998 * 120.00160 * 5.09786 * 9 7 6 29 29 H 1.09005 * 109.46963 * 299.99907 * 10 9 7 30 30 H 1.09000 * 109.47319 * 59.99232 * 10 9 7 31 31 H 1.08993 * 109.47425 * 299.99982 * 11 10 9 32 32 H 1.09007 * 109.46973 * 59.99634 * 11 10 9 33 33 H 1.09005 * 109.47389 * 300.00266 * 12 11 10 34 34 H 1.09001 * 109.46997 * 60.00483 * 12 11 10 35 35 H 0.97003 * 119.99981 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.47147 * 84.41643 * 22 21 6 37 37 H 1.08997 * 109.47690 * 324.41209 * 22 21 6 38 38 H 1.08997 * 109.46850 * 204.41046 * 22 21 6 39 39 H 1.08002 * 125.82925 * 179.73441 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2402 -1.2697 -0.0006 5 6 1.6760 -2.5683 -0.0006 6 6 2.7124 -3.4524 -0.0007 7 6 2.5931 -4.9160 -0.0002 8 8 3.5899 -5.6077 0.0915 9 7 1.3793 -5.4931 -0.1013 10 6 1.2482 -6.9478 0.0114 11 6 -0.2229 -7.3405 -0.1377 12 6 -0.3597 -8.8599 -0.0207 13 6 -1.8087 -9.2466 -0.1682 14 1 -2.5573 -8.4849 -0.3289 15 6 -2.1790 -10.5728 -0.0970 16 7 -1.2675 -11.5004 0.0992 17 14 -3.9752 -11.0522 -0.2791 18 1 -4.4729 -10.6116 -1.6070 19 1 -4.1080 -12.5269 -0.1657 20 1 -4.7726 -10.3993 0.7901 21 7 3.8923 -2.7397 -0.0012 22 6 5.2356 -3.3243 -0.0019 23 6 3.6174 -1.4270 0.0044 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.6238 -2.8116 0.0004 28 1 0.5925 -4.9453 -0.2485 29 1 1.8339 -7.4272 -0.7731 30 1 1.6133 -7.2712 0.9862 31 1 -0.8083 -6.8612 0.6469 32 1 -0.5883 -7.0171 -1.1125 33 1 0.2255 -9.3390 -0.8057 34 1 0.0056 -9.1836 0.9539 35 1 -1.5279 -12.4335 0.1489 36 1 5.5283 -3.5608 -1.0249 37 1 5.2356 -4.2356 0.5960 38 1 5.9423 -2.6112 0.4225 39 1 4.3448 -0.6287 0.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171593532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:53 Heat of formation + Delta-G solvation = -67.914102 kcal Electronic energy + Delta-G solvation = -20452.799167 eV Core-core repulsion = 17166.809938 eV Total energy + Delta-G solvation = -3285.989229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.69437 -40.36780 -39.60273 -36.98787 -35.30773 -34.23195 -33.07356 -31.16403 -30.58048 -28.39761 -27.50826 -25.31642 -23.86860 -22.86617 -22.31099 -20.70970 -19.96510 -18.79854 -18.44823 -17.18225 -17.02712 -16.63268 -16.40332 -16.34121 -15.93757 -15.66665 -15.61813 -15.14372 -15.03853 -14.56695 -14.21802 -13.74240 -13.54135 -13.39792 -13.30135 -13.24425 -12.88615 -12.85212 -12.69920 -12.53188 -12.39925 -11.64567 -11.59734 -11.25597 -11.05360 -10.70122 -10.52581 -10.21450 -9.95682 -9.41322 -8.17629 -6.28826 0.37593 0.43805 1.43788 1.46578 1.50254 1.54426 2.05629 2.27818 2.37541 2.44806 3.16509 3.35002 3.63705 3.88023 3.97413 4.14319 4.19639 4.23684 4.32134 4.36866 4.57098 4.62918 4.69992 4.76239 4.77085 4.91879 4.96567 5.00421 5.19625 5.31541 5.36816 5.48976 5.55365 5.73636 5.73674 5.86680 5.99853 6.24376 6.50393 6.73441 6.89030 7.12174 7.40908 8.94267 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.002967 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.733417 B = 9435.611179 C =10608.785870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.429 3.571 3 O -0.521 6.521 4 C -0.288 4.288 5 C -0.072 4.072 6 C -0.082 4.082 7 C 0.581 3.419 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.133 3.867 11 C -0.102 4.102 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.265 1.265 21 N -0.403 5.403 22 C 0.059 3.941 23 C 0.100 3.900 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.184 0.816 28 H 0.417 0.583 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.070 0.930 33 H -0.008 1.008 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 22.758 -0.522 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.312 3.688 3 O -0.402 6.402 4 C -0.295 4.295 5 C -0.097 4.097 6 C -0.192 4.192 7 C 0.370 3.630 8 O -0.470 6.470 9 N -0.352 5.352 10 C 0.010 3.990 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.189 1.189 21 N -0.073 5.073 22 C -0.081 4.081 23 C -0.043 4.043 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.201 0.799 28 H 0.255 0.745 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.877 22.357 -0.427 23.708 hybrid contribution -0.759 -0.796 -0.088 1.103 sum 7.118 21.561 -0.516 22.711 Atomic orbital electron populations 1.22177 0.91150 1.06280 1.05390 1.22026 0.92670 0.85589 0.68471 1.90524 1.73224 1.35402 1.41028 1.20427 0.93441 0.95183 1.20490 1.21675 0.99167 0.90222 0.98630 1.19693 0.86911 0.91507 1.21109 1.17338 0.83568 0.86132 0.76010 1.90768 1.37616 1.65599 1.52975 1.45596 1.08787 1.08366 1.72421 1.21283 0.98025 0.78883 1.00851 1.21608 0.92982 0.97113 1.02314 1.18938 0.95731 0.91660 0.95086 1.21677 0.94348 0.92781 1.49068 0.91356 1.26012 1.02332 0.96862 0.94888 1.70105 1.35558 1.01070 1.50915 0.85490 0.79401 0.76809 0.79290 1.19016 1.21386 1.18942 1.43875 1.07291 1.05801 1.50341 1.22525 0.79239 1.01361 1.05014 1.23047 0.97544 0.85008 0.98717 0.88118 0.88151 0.88085 0.79929 0.74510 0.92966 0.92799 0.90965 0.91178 0.99007 0.98909 0.92869 0.89650 0.89640 0.86139 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 10.28 71.24 0.73 -1.31 16 2 C 0.43 7.75 7.24 27.88 0.20 7.95 16 3 O -0.52 -12.97 17.65 -3.17 -0.06 -13.03 16 4 C -0.29 -5.19 6.11 -20.18 -0.12 -5.31 16 5 C -0.07 -1.23 9.60 22.63 0.22 -1.01 16 6 C -0.08 -1.83 6.81 39.98 0.27 -1.56 16 7 C 0.58 16.36 7.78 86.49 0.67 17.03 16 8 O -0.59 -20.65 14.68 -4.28 -0.06 -20.71 16 9 N -0.70 -18.06 5.53 -466.93 -2.58 -20.64 16 10 C 0.13 4.41 5.68 86.38 0.49 4.90 16 11 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 12 C 0.02 1.18 4.97 29.85 0.15 1.33 16 13 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 14 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -56.44 13.29 21.45 0.28 -56.16 16 17 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 21 N -0.40 -7.82 3.12 -533.74 -1.67 -9.48 16 22 C 0.06 0.92 10.43 127.77 1.33 2.25 16 23 C 0.10 1.71 11.16 84.44 0.94 2.66 16 24 H 0.10 0.68 6.50 -2.39 -0.02 0.66 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.18 1.87 6.50 -2.91 -0.02 1.86 16 28 H 0.42 7.82 7.35 -92.71 -0.68 7.14 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.78 6.47 -2.39 -0.02 1.76 16 38 H 0.12 1.00 8.11 -2.39 -0.02 0.98 16 39 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -74.63 337.33 4.07 -70.57 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.38 Total: 9.98 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.74 Total: -5.48 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.96 Total: -86.28 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.12 Total: -33.74 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.63 4.07 -70.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.653 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds