Wall clock time and date at job start Tue Mar 31 2020 00:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46845 * 2 1 4 4 C 1.36018 * 116.99547 * 179.97438 * 3 2 1 5 5 C 1.38501 * 120.08309 * 0.02562 * 4 3 2 6 6 C 1.38282 * 120.01893 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.90620 * 179.97438 * 6 5 4 8 8 C 1.38254 * 120.17807 * 359.74280 * 6 5 4 9 9 C 1.38217 * 120.16409 * 0.51592 * 8 6 5 10 10 C 1.38725 * 119.97791 * 359.48488 * 9 8 6 11 11 N 1.39968 * 120.09216 * 180.23540 * 10 9 8 12 12 C 1.46499 * 119.99708 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47147 * 180.02562 * 12 11 10 14 14 O 1.21296 * 119.99657 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00054 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00045 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00299 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00245 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00240 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99863 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47497 * 90.00056 * 20 18 16 22 22 H 1.48504 * 109.47279 * 210.00127 * 20 18 16 23 23 H 1.48506 * 109.47158 * 329.99863 * 20 18 16 24 24 H 1.08994 * 109.47409 * 300.00410 * 1 2 3 25 25 H 1.09000 * 109.46754 * 60.00205 * 1 2 3 26 26 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47409 * 239.99590 * 2 1 3 28 28 H 1.09000 * 109.46754 * 119.99795 * 2 1 3 29 29 H 1.08002 * 119.98665 * 359.95597 * 5 4 3 30 30 H 1.09004 * 109.46899 * 89.99914 * 7 6 5 31 31 H 1.08995 * 109.46822 * 209.99492 * 7 6 5 32 32 H 1.08990 * 109.47288 * 329.99841 * 7 6 5 33 33 H 1.08008 * 119.91586 * 180.27698 * 8 6 5 34 34 H 1.08002 * 120.01488 * 179.76977 * 9 8 6 35 35 H 0.96999 * 120.00401 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.47296 * 299.99612 * 12 11 10 37 37 H 1.08997 * 109.47320 * 60.00115 * 12 11 10 38 38 H 0.97001 * 120.00241 * 0.02562 * 15 13 12 39 39 H 0.96997 * 120.00039 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5255 0.0005 5 6 4.2000 0.4283 0.0005 6 6 5.5707 0.6110 0.0005 7 6 6.4881 -0.5847 0.0011 8 6 6.1017 1.8874 -0.0048 9 6 5.2652 2.9877 0.0006 10 6 3.8891 2.8122 0.0006 11 7 3.0397 3.9247 0.0010 12 6 3.6037 5.2767 0.0010 13 6 2.4857 6.2873 0.0022 14 8 1.3314 5.9147 0.0035 15 7 2.7685 7.6051 0.0029 16 6 1.7515 8.5244 0.0034 17 1 0.7237 8.1927 0.0037 18 6 2.0431 9.8830 0.0036 19 7 1.0682 10.7642 0.0047 20 14 3.8207 10.4567 0.0023 21 1 4.2907 10.6092 -1.3980 22 1 3.9200 11.7625 0.7027 23 1 4.6648 9.4547 0.7015 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7884 -0.5702 0.0008 30 1 6.7093 -0.8734 -1.0265 31 1 7.4153 -0.3309 0.5148 32 1 6.0032 -1.4144 0.5152 33 1 7.1730 2.0252 -0.0093 34 1 5.6826 3.9838 0.0002 35 1 2.0777 3.8004 0.0014 36 1 4.2181 5.4142 0.8908 37 1 4.2174 5.4144 -0.8892 38 1 3.6916 7.9031 0.0022 39 1 1.2717 11.7126 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175119523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:30 Heat of formation + Delta-G solvation = -51.249016 kcal Electronic energy + Delta-G solvation = -20934.623840 eV Core-core repulsion = 17649.357263 eV Total energy + Delta-G solvation = -3285.266577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22368 -38.60648 -37.60939 -35.43720 -34.03856 -32.02936 -31.75103 -31.08932 -29.63417 -27.95006 -25.47735 -24.18989 -23.68113 -21.72754 -20.82909 -19.50147 -18.58127 -17.86321 -16.97375 -16.09514 -16.02046 -15.42496 -14.97143 -14.85544 -14.50209 -14.01532 -13.83787 -13.77681 -13.49859 -13.13964 -13.11259 -12.67891 -12.54663 -12.52272 -12.14796 -12.08958 -11.79098 -11.65832 -11.26954 -11.23421 -10.86429 -10.66309 -10.64305 -10.04457 -9.75821 -9.65619 -8.71589 -8.43696 -8.28205 -6.90101 -6.38525 -3.90962 1.50157 1.67288 2.98769 3.03256 3.11778 3.23615 3.59660 3.66384 3.90958 4.04431 4.60492 4.78150 4.84583 4.93730 5.01188 5.09046 5.15453 5.16623 5.30439 5.44827 5.53933 5.55610 5.64389 5.68501 5.71549 5.76806 5.78406 5.79952 5.97619 6.00196 6.26043 6.39956 6.73021 6.89408 7.23269 7.47689 7.70981 8.02348 8.18292 8.48734 8.84804 9.32310 9.67630 10.74016 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.003838 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.149444 B = 7293.641398 C = 8573.739537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.316 6.316 4 C 0.056 3.944 5 C -0.161 4.161 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.102 4.102 9 C -0.175 4.175 10 C 0.204 3.796 11 N -0.721 5.721 12 C 0.112 3.888 13 C 0.440 3.560 14 O -0.573 6.573 15 N -0.580 5.580 16 C -0.309 4.309 17 H 0.121 0.879 18 C 0.044 3.956 19 N -0.876 5.876 20 Si 0.880 3.120 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.268 1.268 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.417 0.583 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.373 0.627 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 -20.617 -0.046 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.230 6.230 4 C 0.008 3.992 5 C -0.181 4.181 6 C -0.126 4.126 7 C -0.159 4.159 8 C -0.121 4.121 9 C -0.198 4.198 10 C 0.099 3.901 11 N -0.354 5.354 12 C -0.017 4.017 13 C 0.226 3.774 14 O -0.456 6.456 15 N -0.218 5.218 16 C -0.438 4.438 17 H 0.138 0.862 18 C -0.160 4.160 19 N -0.516 5.516 20 Si 0.706 3.294 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.206 0.794 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.501 -20.273 -0.043 22.389 hybrid contribution 1.092 0.480 0.009 1.193 sum 10.593 -19.793 -0.034 22.450 Atomic orbital electron populations 1.21774 0.92937 1.02457 1.03870 1.22661 0.95704 0.82338 1.00780 1.86058 1.18636 1.28654 1.89687 1.18372 0.82648 0.92358 1.05857 1.20775 0.93416 0.97017 1.06875 1.19353 0.93088 0.94844 1.05297 1.20627 0.98234 0.95452 1.01601 1.20628 0.99022 0.91388 1.01076 1.20491 0.90387 0.99575 1.09362 1.17254 0.90285 0.84660 0.97931 1.44365 1.09038 1.01237 1.80744 1.20943 0.95897 0.82989 1.01837 1.19661 0.89814 0.83164 0.84745 1.90559 1.21094 1.79034 1.54952 1.42121 1.08426 1.05271 1.65982 1.19445 0.90151 0.85676 1.48496 0.86161 1.25060 0.98113 0.95527 0.97285 1.69621 1.31463 1.01968 1.48505 0.86659 0.84221 0.79450 0.79038 1.19447 1.20024 1.19323 0.91408 0.91403 0.90695 0.92512 0.92515 0.85970 0.91948 0.91985 0.92308 0.86335 0.85440 0.74368 0.90684 0.90670 0.79384 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.06 0.64 5.46 37.16 0.20 0.85 16 3 O -0.32 -4.70 9.39 -19.80 -0.19 -4.89 16 4 C 0.06 0.83 6.70 -39.08 -0.26 0.57 16 5 C -0.16 -2.00 8.69 -39.47 -0.34 -2.35 16 6 C -0.12 -1.43 5.88 -104.60 -0.62 -2.04 16 7 C -0.10 -0.86 10.01 36.01 0.36 -0.50 16 8 C -0.10 -1.22 9.69 -39.58 -0.38 -1.60 16 9 C -0.17 -2.37 9.31 -39.41 -0.37 -2.73 16 10 C 0.20 3.21 6.67 -83.56 -0.56 2.65 16 11 N -0.72 -12.72 5.70 -59.66 -0.34 -13.06 16 12 C 0.11 1.92 5.40 -5.19 -0.03 1.89 16 13 C 0.44 10.00 7.85 -10.98 -0.09 9.91 16 14 O -0.57 -15.35 15.24 5.54 0.08 -15.26 16 15 N -0.58 -13.64 5.09 -10.96 -0.06 -13.70 16 16 C -0.31 -8.67 10.16 -14.94 -0.15 -8.82 16 17 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 18 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 19 N -0.88 -25.32 13.96 55.50 0.77 -24.55 16 20 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 34 H 0.13 1.54 6.74 -52.49 -0.35 1.19 16 35 H 0.42 8.22 6.80 -40.82 -0.28 7.94 16 36 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 37 H 0.08 1.13 7.95 -51.93 -0.41 0.71 16 38 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -32.32 328.77 -6.76 -39.08 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -5.33 Total: 15.26 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.94 Total: -2.13 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.38 Total: -51.31 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.10 Total: -20.15 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.32 -6.76 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175119523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.173 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds