Wall clock time and date at job start Tue Mar 31 2020 00:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46845 * 2 1 4 4 C 1.36018 * 116.99547 * 179.97438 * 3 2 1 5 5 C 1.38501 * 120.08309 * 0.02562 * 4 3 2 6 6 C 1.38282 * 120.01893 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.90620 * 179.97438 * 6 5 4 8 8 C 1.38254 * 120.17807 * 359.74280 * 6 5 4 9 9 C 1.38217 * 120.16409 * 0.51592 * 8 6 5 10 10 C 1.38725 * 119.97791 * 359.48488 * 9 8 6 11 11 N 1.39968 * 120.09216 * 180.23540 * 10 9 8 12 12 C 1.46499 * 119.99708 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47147 * 180.02562 * 12 11 10 14 14 O 1.21296 * 119.99657 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00054 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00045 * 179.97438 * 15 13 12 17 17 H 1.08005 * 120.00299 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00245 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00240 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99863 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47497 * 90.00056 * 20 18 16 22 22 H 1.48504 * 109.47279 * 210.00127 * 20 18 16 23 23 H 1.48506 * 109.47158 * 329.99863 * 20 18 16 24 24 H 1.08994 * 109.47409 * 300.00410 * 1 2 3 25 25 H 1.09000 * 109.46754 * 60.00205 * 1 2 3 26 26 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47409 * 239.99590 * 2 1 3 28 28 H 1.09000 * 109.46754 * 119.99795 * 2 1 3 29 29 H 1.08002 * 119.98665 * 359.95597 * 5 4 3 30 30 H 1.09004 * 109.46899 * 89.99914 * 7 6 5 31 31 H 1.08995 * 109.46822 * 209.99492 * 7 6 5 32 32 H 1.08990 * 109.47288 * 329.99841 * 7 6 5 33 33 H 1.08008 * 119.91586 * 180.27698 * 8 6 5 34 34 H 1.08002 * 120.01488 * 179.76977 * 9 8 6 35 35 H 0.96999 * 120.00401 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.47296 * 299.99612 * 12 11 10 37 37 H 1.08997 * 109.47320 * 60.00115 * 12 11 10 38 38 H 0.97001 * 120.00241 * 0.02562 * 15 13 12 39 39 H 0.96997 * 120.00039 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5255 0.0005 5 6 4.2000 0.4283 0.0005 6 6 5.5707 0.6110 0.0005 7 6 6.4881 -0.5847 0.0011 8 6 6.1017 1.8874 -0.0048 9 6 5.2652 2.9877 0.0006 10 6 3.8891 2.8122 0.0006 11 7 3.0397 3.9247 0.0010 12 6 3.6037 5.2767 0.0010 13 6 2.4857 6.2873 0.0022 14 8 1.3314 5.9147 0.0035 15 7 2.7685 7.6051 0.0029 16 6 1.7515 8.5244 0.0034 17 1 0.7237 8.1927 0.0037 18 6 2.0431 9.8830 0.0036 19 7 1.0682 10.7642 0.0047 20 14 3.8207 10.4567 0.0023 21 1 4.2907 10.6092 -1.3980 22 1 3.9200 11.7625 0.7027 23 1 4.6648 9.4547 0.7015 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7884 -0.5702 0.0008 30 1 6.7093 -0.8734 -1.0265 31 1 7.4153 -0.3309 0.5148 32 1 6.0032 -1.4144 0.5152 33 1 7.1730 2.0252 -0.0093 34 1 5.6826 3.9838 0.0002 35 1 2.0777 3.8004 0.0014 36 1 4.2181 5.4142 0.8908 37 1 4.2174 5.4144 -0.8892 38 1 3.6916 7.9031 0.0022 39 1 1.2717 11.7126 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175119523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:28 Heat of formation + Delta-G solvation = -74.392005 kcal Electronic energy + Delta-G solvation = -20935.627395 eV Core-core repulsion = 17649.357263 eV Total energy + Delta-G solvation = -3286.270132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.25071 -40.37878 -38.61637 -36.70971 -35.94984 -33.85488 -32.89107 -32.04943 -30.58784 -29.26692 -26.89910 -25.47831 -24.76254 -22.67305 -21.91162 -21.31862 -20.38773 -19.07332 -18.13803 -17.36716 -17.01576 -16.93726 -16.61593 -16.38131 -15.74356 -15.25103 -14.85633 -14.80559 -14.77743 -14.43157 -14.24790 -14.11451 -13.88700 -13.75905 -13.38853 -13.00589 -12.86763 -12.62002 -12.58673 -12.45453 -12.15663 -11.99335 -11.75104 -11.58705 -11.52816 -10.78832 -10.63928 -10.32924 -9.40164 -8.46105 -8.00996 -6.08943 0.53532 0.69439 1.30254 1.34534 1.44770 1.81070 2.20515 2.23645 2.45100 2.93852 2.97998 3.09988 3.90975 4.00650 4.06144 4.06577 4.22013 4.28967 4.34566 4.39109 4.46579 4.47759 4.63659 4.79788 4.85038 4.92246 4.97065 4.98962 5.18196 5.23325 5.35215 5.46588 5.47795 5.81895 5.85456 6.00179 6.18842 6.49455 6.64132 6.77833 6.84651 7.28965 7.81288 8.71044 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.003838 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.149444 B = 7293.641398 C = 8573.739537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.346 6.346 4 C 0.037 3.963 5 C -0.166 4.166 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.107 4.107 9 C -0.174 4.174 10 C 0.169 3.831 11 N -0.740 5.740 12 C 0.128 3.872 13 C 0.440 3.560 14 O -0.622 6.622 15 N -0.577 5.577 16 C -0.335 4.335 17 H 0.056 0.944 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.228 1.228 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.401 0.599 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.394 0.606 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.910 -22.316 -0.006 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.261 6.261 4 C -0.011 4.011 5 C -0.185 4.185 6 C -0.122 4.122 7 C -0.158 4.158 8 C -0.126 4.126 9 C -0.198 4.198 10 C 0.067 3.933 11 N -0.373 5.373 12 C 0.000 4.000 13 C 0.228 3.772 14 O -0.508 6.508 15 N -0.218 5.218 16 C -0.464 4.464 17 H 0.074 0.926 18 C -0.211 4.211 19 N -0.569 5.569 20 Si 0.785 3.215 21 H -0.179 1.179 22 H -0.198 1.198 23 H -0.151 1.151 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.160 0.840 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.237 0.763 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.230 0.770 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.996 -22.022 -0.001 26.093 hybrid contribution -0.385 0.836 -0.009 0.921 sum 13.611 -21.186 -0.010 25.181 Atomic orbital electron populations 1.21814 0.92408 1.04036 1.02586 1.22928 0.96201 0.81026 1.02018 1.86037 1.19140 1.31031 1.89924 1.18696 0.82993 0.92969 1.06453 1.21067 0.93802 0.97268 1.06375 1.19840 0.93211 0.96138 1.02963 1.20698 0.98143 0.94313 1.02680 1.21006 1.00330 0.90984 1.00236 1.20781 0.89555 1.01021 1.08397 1.17592 0.91039 0.84395 1.00310 1.44341 1.08451 1.01824 1.82691 1.20915 0.93457 0.81119 1.04519 1.20790 0.90689 0.83704 0.81997 1.90539 1.23977 1.79976 1.56282 1.41890 1.08354 1.04969 1.66544 1.19016 0.88905 0.87478 1.51033 0.92633 1.26163 1.04665 0.94696 0.95548 1.69799 1.35062 1.02716 1.49364 0.85362 0.76555 0.79469 0.80161 1.17908 1.19846 1.15094 0.92681 0.92674 0.87635 0.91152 0.91151 0.84016 0.90826 0.90569 0.91300 0.83506 0.83964 0.76261 0.87774 0.87673 0.77010 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.28 71.98 0.74 -2.08 16 2 C 0.05 1.09 5.46 71.98 0.39 1.49 16 3 O -0.35 -10.53 9.39 -93.75 -0.88 -11.41 16 4 C 0.04 1.08 6.70 22.59 0.15 1.23 16 5 C -0.17 -3.78 8.69 22.34 0.19 -3.59 16 6 C -0.12 -2.37 5.88 -19.85 -0.12 -2.49 16 7 C -0.10 -1.30 10.01 71.24 0.71 -0.59 16 8 C -0.11 -2.17 9.69 22.27 0.22 -1.95 16 9 C -0.17 -4.27 9.31 22.38 0.21 -4.06 16 10 C 0.17 5.19 6.67 38.22 0.25 5.44 16 11 N -0.74 -26.24 5.70 -342.68 -1.95 -28.19 16 12 C 0.13 4.20 5.40 85.63 0.46 4.66 16 13 C 0.44 20.32 7.85 87.66 0.69 21.01 16 14 O -0.62 -35.25 15.24 -3.08 -0.05 -35.30 16 15 N -0.58 -27.18 5.09 -306.98 -1.56 -28.75 16 16 C -0.34 -19.66 10.16 84.04 0.85 -18.81 16 17 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.93 -55.75 13.96 21.66 0.30 -55.45 16 20 Si 0.97 38.01 27.74 68.60 1.90 39.91 16 21 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 28 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 29 H 0.14 2.53 6.30 -2.91 -0.02 2.51 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 32 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.14 2.92 6.74 -2.91 -0.02 2.91 16 35 H 0.40 16.64 6.80 -92.71 -0.63 16.01 16 36 H 0.10 2.83 7.95 -2.38 -0.02 2.81 16 37 H 0.11 2.84 7.95 -2.39 -0.02 2.82 16 38 H 0.39 15.05 5.76 -92.71 -0.53 14.52 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.14 328.77 2.84 -74.30 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -0.15 Total: 44.78 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.23 Total: 0.10 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -3.21 Total: -112.38 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.93 Total: -46.71 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -77.14 2.84 -74.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175119523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.089 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds