Wall clock time and date at job start Tue Mar 31 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46788 * 2 1 4 4 C 1.35984 * 117.00123 * 180.02562 * 3 2 1 5 5 C 1.38541 * 120.07735 * 359.97438 * 4 3 2 6 6 C 1.38256 * 120.01355 * 180.02562 * 5 4 3 7 7 C 1.38271 * 120.17504 * 359.97438 * 6 5 4 8 8 C 1.38209 * 120.16241 * 0.02562 * 7 6 5 9 9 C 1.38714 * 119.98287 * 359.97438 * 8 7 6 10 10 N 1.40171 * 120.08451 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99916 * 325.34278 * 10 9 8 12 12 O 1.21591 * 120.00277 * 4.43571 * 11 10 9 13 13 N 1.34777 * 119.99684 * 184.43731 * 11 10 9 14 14 C 1.46497 * 120.00203 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99906 * 180.02562 * 13 11 10 16 16 C 1.50693 * 109.47256 * 89.99919 * 15 13 11 17 17 H 1.07999 * 120.00058 * 359.97438 * 16 15 13 18 18 C 1.37885 * 120.00056 * 180.02562 * 16 15 13 19 19 N 1.31507 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46898 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47319 * 119.99715 * 20 18 16 23 23 H 1.48497 * 109.47122 * 239.99899 * 20 18 16 24 24 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47347 * 299.99747 * 1 2 3 26 26 H 1.09002 * 109.47271 * 60.00019 * 1 2 3 27 27 H 1.08998 * 109.46918 * 240.00531 * 2 1 3 28 28 H 1.08995 * 109.46916 * 119.99838 * 2 1 3 29 29 H 1.08001 * 119.99597 * 0.04240 * 5 4 3 30 30 H 1.07999 * 119.91480 * 180.27110 * 6 5 4 31 31 H 1.07993 * 119.92152 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.00859 * 180.02562 * 8 7 6 33 33 H 0.97005 * 119.99630 * 145.34872 * 10 9 8 34 34 H 1.09007 * 109.47163 * 90.00103 * 14 13 11 35 35 H 1.08998 * 109.47276 * 209.99685 * 14 13 11 36 36 H 1.09003 * 109.47620 * 330.00503 * 14 13 11 37 37 H 1.09000 * 109.46841 * 210.00031 * 15 13 11 38 38 H 1.09002 * 109.47144 * 329.99943 * 15 13 11 39 39 H 0.97000 * 120.00363 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5256 -0.0005 5 6 4.1999 0.4281 -0.0005 6 6 5.5703 0.6109 -0.0005 7 6 6.1012 1.8876 -0.0011 8 6 5.2645 2.9876 -0.0011 9 6 3.8885 2.8119 -0.0011 10 7 3.0379 3.9261 -0.0017 11 6 3.3920 5.0446 0.6616 12 8 4.4835 5.1168 1.1925 13 7 2.5363 6.0831 0.7363 14 6 1.2214 5.9964 0.0961 15 6 2.9214 7.2992 1.4567 16 6 3.5996 8.2524 0.5068 17 1 3.7311 7.9794 -0.5298 18 6 4.0534 9.4725 0.9613 19 7 3.8937 9.8046 2.2237 20 14 4.8935 10.6543 -0.2163 21 1 4.9482 10.0480 -1.5708 22 1 4.1272 11.9251 -0.2729 23 1 6.2733 10.9291 0.2586 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5705 -0.0008 30 1 6.2280 -0.2458 -0.0050 31 1 7.1723 2.0257 -0.0007 32 1 5.6818 3.9838 -0.0020 33 1 2.1943 3.8919 -0.4794 34 1 0.4996 5.5866 0.8027 35 1 0.9018 6.9913 -0.2137 36 1 1.2843 5.3466 -0.7768 37 1 2.0318 7.7722 1.8726 38 1 3.6070 7.0415 2.2640 39 1 4.2125 10.6631 2.5435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176542788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:29 Heat of formation + Delta-G solvation = -30.641450 kcal Electronic energy + Delta-G solvation = -21564.418079 eV Core-core repulsion = 18280.045114 eV Total energy + Delta-G solvation = -3284.372966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52693 -39.18462 -37.32684 -34.94252 -34.25778 -32.52966 -31.91606 -29.94728 -28.93073 -27.54038 -25.71712 -24.23915 -23.21613 -21.84289 -21.56890 -19.29932 -18.44529 -17.43992 -16.69978 -16.48103 -16.20912 -15.60628 -15.10527 -14.66903 -14.56706 -14.07336 -13.69790 -13.55026 -13.38168 -12.98405 -12.79596 -12.64893 -12.17365 -12.06766 -11.92209 -11.78574 -11.50582 -11.20648 -11.06339 -10.86279 -10.84337 -10.55843 -10.13123 -9.98719 -9.59103 -9.17340 -8.42461 -8.40174 -7.78906 -7.43069 -6.01424 -4.06005 1.49485 1.55885 3.08557 3.30463 3.31859 3.39515 3.44567 3.75625 4.12221 4.43655 4.59365 4.71358 4.73028 4.94846 5.03033 5.06344 5.25892 5.32512 5.40349 5.55150 5.56536 5.58803 5.75411 5.80930 5.91872 6.03709 6.16228 6.30928 6.40891 6.67787 6.83840 6.85546 7.07675 7.39636 7.50969 7.56135 7.73042 7.97178 8.26370 8.64503 8.95391 9.30120 9.59525 11.06444 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004318 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.045811 B = 6482.980211 C = 7335.727428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.317 6.317 4 C 0.091 3.909 5 C -0.193 4.193 6 C -0.110 4.110 7 C -0.136 4.136 8 C -0.087 4.087 9 C 0.154 3.846 10 N -0.689 5.689 11 C 0.699 3.301 12 O -0.572 6.572 13 N -0.612 5.612 14 C 0.085 3.915 15 C 0.259 3.741 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.404 0.596 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -20.182 -6.152 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.232 6.232 4 C 0.044 3.956 5 C -0.213 4.213 6 C -0.129 4.129 7 C -0.155 4.155 8 C -0.108 4.108 9 C 0.057 3.943 10 N -0.339 5.339 11 C 0.401 3.599 12 O -0.448 6.448 13 N -0.347 5.347 14 C -0.059 4.059 15 C 0.140 3.860 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.170 0.830 33 H 0.241 0.759 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.854 -19.703 -5.583 21.046 hybrid contribution 0.037 0.440 -0.835 0.944 sum -4.816 -19.262 -6.418 20.867 Atomic orbital electron populations 1.21772 0.92894 1.02642 1.03611 1.22715 0.95682 0.82262 1.01147 1.86032 1.18840 1.28939 1.89349 1.18727 0.82457 0.92704 1.01711 1.20932 0.94206 0.97070 1.09072 1.20835 0.94102 0.97225 1.00716 1.20994 0.99862 0.91934 1.02680 1.21399 0.90740 1.01109 0.97511 1.16931 0.90070 0.83324 1.03984 1.42777 1.23536 1.12368 1.55194 1.15906 0.84695 0.79719 0.79616 1.90866 1.21115 1.81232 1.51611 1.47475 1.14684 1.16232 1.56346 1.21578 0.85405 1.02816 0.96128 1.19252 0.96225 0.78430 0.92103 1.21505 1.38116 1.00661 0.96169 0.92410 1.24931 0.95906 0.98029 0.95247 1.69940 1.46952 1.22451 1.14073 0.86441 0.79332 0.80565 0.81060 1.19842 1.21005 1.20880 0.90573 0.91452 0.91538 0.92280 0.92225 0.85678 0.86158 0.85769 0.82996 0.75934 0.93659 0.90333 0.93190 0.94783 0.93646 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.51 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.14 9.70 -19.69 -0.19 -4.33 16 4 C 0.09 1.33 6.70 -39.08 -0.26 1.07 16 5 C -0.19 -2.37 9.04 -39.46 -0.36 -2.73 16 6 C -0.11 -1.33 10.04 -39.56 -0.40 -1.72 16 7 C -0.14 -1.90 10.04 -39.58 -0.40 -2.30 16 8 C -0.09 -1.51 8.70 -39.42 -0.34 -1.86 16 9 C 0.15 2.64 6.32 -83.48 -0.53 2.12 16 10 N -0.69 -12.41 5.07 -14.10 -0.07 -12.48 16 11 C 0.70 15.65 8.13 -86.92 -0.71 14.94 16 12 O -0.57 -14.92 13.34 5.29 0.07 -14.85 16 13 N -0.61 -13.55 2.86 -188.74 -0.54 -14.09 16 14 C 0.09 1.40 10.24 59.85 0.61 2.02 16 15 C 0.26 6.92 5.16 -5.20 -0.03 6.89 16 16 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 20 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 29 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.15 3.04 6.20 -52.49 -0.33 2.72 16 33 H 0.40 6.21 6.26 -40.82 -0.26 5.95 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.05 0.68 6.30 -51.93 -0.33 0.36 16 37 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.05 1.36 7.42 -51.93 -0.39 0.98 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -33.91 328.82 -7.64 -41.55 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.34 Total: 3.59 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.24 Total: 4.69 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.13 Total: -52.63 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.12 Total: -19.19 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.91 -7.64 -41.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176542788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.911 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds