Wall clock time and date at job start Tue Mar 31 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46788 * 2 1 4 4 C 1.35984 * 117.00123 * 180.02562 * 3 2 1 5 5 C 1.38541 * 120.07735 * 359.97438 * 4 3 2 6 6 C 1.38256 * 120.01355 * 180.02562 * 5 4 3 7 7 C 1.38271 * 120.17504 * 359.97438 * 6 5 4 8 8 C 1.38209 * 120.16241 * 0.02562 * 7 6 5 9 9 C 1.38714 * 119.98287 * 359.97438 * 8 7 6 10 10 N 1.40171 * 120.08451 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99916 * 325.34278 * 10 9 8 12 12 O 1.21591 * 120.00277 * 4.43571 * 11 10 9 13 13 N 1.34777 * 119.99684 * 184.43731 * 11 10 9 14 14 C 1.46497 * 120.00203 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99906 * 180.02562 * 13 11 10 16 16 C 1.50693 * 109.47256 * 89.99919 * 15 13 11 17 17 H 1.07999 * 120.00058 * 359.97438 * 16 15 13 18 18 C 1.37885 * 120.00056 * 180.02562 * 16 15 13 19 19 N 1.31507 * 119.99747 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00155 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46898 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47319 * 119.99715 * 20 18 16 23 23 H 1.48497 * 109.47122 * 239.99899 * 20 18 16 24 24 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47347 * 299.99747 * 1 2 3 26 26 H 1.09002 * 109.47271 * 60.00019 * 1 2 3 27 27 H 1.08998 * 109.46918 * 240.00531 * 2 1 3 28 28 H 1.08995 * 109.46916 * 119.99838 * 2 1 3 29 29 H 1.08001 * 119.99597 * 0.04240 * 5 4 3 30 30 H 1.07999 * 119.91480 * 180.27110 * 6 5 4 31 31 H 1.07993 * 119.92152 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.00859 * 180.02562 * 8 7 6 33 33 H 0.97005 * 119.99630 * 145.34872 * 10 9 8 34 34 H 1.09007 * 109.47163 * 90.00103 * 14 13 11 35 35 H 1.08998 * 109.47276 * 209.99685 * 14 13 11 36 36 H 1.09003 * 109.47620 * 330.00503 * 14 13 11 37 37 H 1.09000 * 109.46841 * 210.00031 * 15 13 11 38 38 H 1.09002 * 109.47144 * 329.99943 * 15 13 11 39 39 H 0.97000 * 120.00363 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5256 -0.0005 5 6 4.1999 0.4281 -0.0005 6 6 5.5703 0.6109 -0.0005 7 6 6.1012 1.8876 -0.0011 8 6 5.2645 2.9876 -0.0011 9 6 3.8885 2.8119 -0.0011 10 7 3.0379 3.9261 -0.0017 11 6 3.3920 5.0446 0.6616 12 8 4.4835 5.1168 1.1925 13 7 2.5363 6.0831 0.7363 14 6 1.2214 5.9964 0.0961 15 6 2.9214 7.2992 1.4567 16 6 3.5996 8.2524 0.5068 17 1 3.7311 7.9794 -0.5298 18 6 4.0534 9.4725 0.9613 19 7 3.8937 9.8046 2.2237 20 14 4.8935 10.6543 -0.2163 21 1 4.9482 10.0480 -1.5708 22 1 4.1272 11.9251 -0.2729 23 1 6.2733 10.9291 0.2586 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5705 -0.0008 30 1 6.2280 -0.2458 -0.0050 31 1 7.1723 2.0257 -0.0007 32 1 5.6818 3.9838 -0.0020 33 1 2.1943 3.8919 -0.4794 34 1 0.4996 5.5866 0.8027 35 1 0.9018 6.9913 -0.2137 36 1 1.2843 5.3466 -0.7768 37 1 2.0318 7.7722 1.8726 38 1 3.6070 7.0415 2.2640 39 1 4.2125 10.6631 2.5435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176542788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:29 Heat of formation + Delta-G solvation = -52.888908 kcal Electronic energy + Delta-G solvation = -21565.382802 eV Core-core repulsion = 18280.045114 eV Total energy + Delta-G solvation = -3285.337688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83516 -40.55398 -38.41707 -36.69479 -35.80937 -34.62196 -32.65235 -31.12572 -30.27000 -29.26984 -27.36311 -25.34843 -24.85445 -23.04781 -22.69065 -20.87340 -19.67008 -18.82034 -18.62629 -18.07894 -17.07015 -16.85600 -16.73516 -16.35478 -15.93070 -15.50968 -14.97312 -14.83119 -14.68855 -14.22348 -14.19341 -13.88090 -13.50072 -13.34693 -13.20127 -12.98400 -12.87608 -12.76854 -12.55495 -12.52530 -12.20340 -11.98212 -11.71383 -11.59952 -11.36911 -10.90217 -10.64237 -9.64858 -9.43356 -8.74469 -8.21155 -6.36575 0.34964 0.46356 1.36612 1.39234 1.50930 1.72856 2.16730 2.23830 2.39820 2.88261 3.04400 3.09076 3.89865 4.03363 4.12508 4.22154 4.26756 4.30169 4.43137 4.49346 4.56936 4.61757 4.75539 4.80498 4.94900 4.98593 4.99603 5.15700 5.21537 5.30296 5.35484 5.53980 5.56996 5.66509 5.77372 5.90791 6.05788 6.06820 6.49310 6.71951 7.03496 7.30438 7.62346 8.85398 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004318 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.045811 B = 6482.980211 C = 7335.727428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.333 6.333 4 C 0.096 3.904 5 C -0.187 4.187 6 C -0.093 4.093 7 C -0.144 4.144 8 C -0.113 4.113 9 C 0.113 3.887 10 N -0.671 5.671 11 C 0.693 3.307 12 O -0.620 6.620 13 N -0.621 5.621 14 C 0.081 3.919 15 C 0.276 3.724 16 C -0.543 4.543 17 H 0.051 0.949 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.267 1.267 23 H -0.281 1.281 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.140 0.860 32 H 0.112 0.888 33 H 0.415 0.585 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.000 1.000 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 -22.766 -7.696 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.247 6.247 4 C 0.049 3.951 5 C -0.206 4.206 6 C -0.112 4.112 7 C -0.162 4.162 8 C -0.134 4.134 9 C 0.017 3.983 10 N -0.322 5.322 11 C 0.395 3.605 12 O -0.501 6.501 13 N -0.355 5.355 14 C -0.061 4.061 15 C 0.154 3.846 16 C -0.581 4.581 17 H 0.069 0.931 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.192 1.192 23 H -0.207 1.207 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.130 0.870 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.551 -22.343 -7.167 24.112 hybrid contribution 0.201 1.062 -0.339 1.133 sum -5.350 -21.281 -7.506 23.192 Atomic orbital electron populations 1.21808 0.91704 1.04160 1.03000 1.23095 0.96688 0.80514 1.02541 1.86028 1.17914 1.31749 1.89038 1.18755 0.83646 0.92008 1.00721 1.21397 0.94057 0.97985 1.07114 1.21298 0.94768 0.97335 0.97754 1.21217 1.00412 0.92021 1.02583 1.21226 0.91765 1.00507 0.99927 1.17194 0.90014 0.84085 1.06983 1.42426 1.24053 1.11441 1.54304 1.16093 0.84075 0.80669 0.79667 1.90827 1.23203 1.82350 1.53672 1.47359 1.16692 1.14980 1.56513 1.21848 0.82999 1.03762 0.97532 1.18720 0.94816 0.79891 0.91140 1.21729 1.38839 1.01494 0.96074 0.93076 1.25843 0.96337 0.99806 0.97025 1.70052 1.47648 1.23193 1.15846 0.85345 0.78110 0.78495 0.78685 1.19371 1.19226 1.20692 0.87968 0.92497 0.91739 0.90340 0.91168 0.81898 0.82060 0.84194 0.87031 0.74541 0.91238 0.90438 0.90197 0.95205 0.98225 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.67 5.46 71.98 0.39 1.06 16 3 O -0.33 -7.98 9.70 -93.37 -0.91 -8.89 16 4 C 0.10 2.64 6.70 22.59 0.15 2.79 16 5 C -0.19 -3.89 9.04 22.35 0.20 -3.69 16 6 C -0.09 -1.93 10.04 22.28 0.22 -1.70 16 7 C -0.14 -3.92 10.04 22.27 0.22 -3.70 16 8 C -0.11 -4.13 8.70 22.38 0.19 -3.94 16 9 C 0.11 3.94 6.32 38.17 0.24 4.18 16 10 N -0.67 -24.84 5.07 -316.80 -1.61 -26.45 16 11 C 0.69 32.65 8.13 179.06 1.45 34.11 16 12 O -0.62 -34.84 13.34 -4.00 -0.05 -34.89 16 13 N -0.62 -28.54 2.86 -869.32 -2.48 -31.02 16 14 C 0.08 2.64 10.24 127.77 1.31 3.95 16 15 C 0.28 15.51 5.16 85.63 0.44 15.95 16 16 C -0.54 -32.24 9.39 25.60 0.24 -32.00 16 17 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 18 C 0.01 0.52 5.46 84.66 0.46 0.98 16 19 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 20 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 24 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 28 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 29 H 0.16 2.15 6.30 -2.91 -0.02 2.13 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.11 4.93 6.20 -2.91 -0.02 4.91 16 33 H 0.42 12.70 6.26 -92.70 -0.58 12.12 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 36 H 0.08 2.10 6.30 -2.39 -0.02 2.08 16 37 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 38 H 0.00 -0.03 7.42 -2.39 -0.02 -0.04 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.50 328.82 4.02 -74.48 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.48 Total: 18.56 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.28 Total: 17.00 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.81 Total: -114.16 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.96 Total: -43.78 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -78.50 4.02 -74.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176542788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.593 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds