Wall clock time and date at job start Tue Mar 31 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00029 * 2 1 4 4 C 1.50700 * 109.47624 * 179.97438 * 3 2 1 5 5 C 1.38302 * 119.96501 * 270.27683 * 4 3 2 6 6 C 1.38256 * 120.14018 * 180.27012 * 5 4 3 7 7 C 1.38134 * 120.07291 * 359.45155 * 6 5 4 8 8 C 1.38847 * 119.92355 * 0.27080 * 7 6 5 9 9 N 1.39946 * 120.06879 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00274 * 144.91037 * 9 8 7 11 11 O 1.21583 * 119.99749 * 4.59423 * 10 9 8 12 12 N 1.34771 * 120.00056 * 184.58907 * 10 9 8 13 13 C 1.46508 * 119.99997 * 0.02562 * 12 10 9 14 14 C 1.46494 * 120.00040 * 180.02562 * 12 10 9 15 15 C 1.50696 * 109.47627 * 89.99983 * 14 12 10 16 16 H 1.07998 * 119.99753 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00243 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99847 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99974 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47462 * 89.99787 * 19 17 15 21 21 H 1.48501 * 109.46875 * 209.99550 * 19 17 15 22 22 H 1.48504 * 109.47320 * 329.99487 * 19 17 15 23 23 C 1.38093 * 119.96609 * 89.99291 * 4 3 2 24 24 H 1.09000 * 109.46543 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47009 * 300.00083 * 1 2 3 26 26 H 1.09000 * 109.46866 * 60.00676 * 1 2 3 27 27 H 1.09002 * 109.47439 * 59.99675 * 3 2 1 28 28 H 1.09004 * 109.47421 * 299.99637 * 3 2 1 29 29 H 1.08000 * 119.92894 * 0.02562 * 5 4 3 30 30 H 1.08006 * 119.96892 * 179.72033 * 6 5 4 31 31 H 1.07995 * 120.04107 * 180.25720 * 7 6 5 32 32 H 0.97008 * 119.99783 * 324.91315 * 9 8 7 33 33 H 1.09001 * 109.46873 * 90.00349 * 13 12 10 34 34 H 1.09001 * 109.47118 * 209.99609 * 13 12 10 35 35 H 1.08990 * 109.46990 * 329.99921 * 13 12 10 36 36 H 1.09008 * 109.47192 * 210.00338 * 14 12 10 37 37 H 1.09000 * 109.47160 * 329.99556 * 14 12 10 38 38 H 0.97004 * 120.00314 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03319 * 0.02849 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2002 1.1265 1.1991 6 6 5.5789 1.0230 1.2039 7 6 6.2731 0.9679 0.0109 8 6 5.5852 1.0222 -1.1939 9 7 6.2854 0.9671 -2.4043 10 6 5.7465 0.3366 -3.4666 11 8 4.6183 -0.1115 -3.3995 12 7 6.4582 0.2029 -4.6033 13 6 7.8179 0.7425 -4.6840 14 6 5.8722 -0.4819 -5.7581 15 6 5.1527 0.5195 -6.6243 16 1 5.1342 1.5621 -6.3429 17 6 4.5190 0.1051 -7.7766 18 7 3.8907 0.9791 -8.5321 19 14 4.5517 -1.6979 -8.2636 20 1 3.3831 -2.3932 -7.6670 21 1 4.4932 -1.8121 -9.7431 22 1 5.8049 -2.3219 -7.7682 23 6 4.2006 1.1318 -1.1954 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.6594 1.1645 2.1331 30 1 6.1135 0.9809 2.1414 31 1 7.3497 0.8829 0.0153 32 1 7.1588 1.3827 -2.4787 33 1 8.5302 -0.0181 -4.3640 34 1 8.0334 1.0322 -5.7124 35 1 7.9017 1.6146 -4.0356 36 1 6.6627 -0.9608 -6.3362 37 1 5.1663 -1.2373 -5.4129 38 1 3.4445 0.6876 -9.3426 39 1 3.6627 1.1745 -2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176548605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:51 Heat of formation + Delta-G solvation = -30.414746 kcal Electronic energy + Delta-G solvation = -21375.030462 eV Core-core repulsion = 18090.667327 eV Total energy + Delta-G solvation = -3284.363135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.31585 -38.78425 -37.45235 -35.12686 -34.43415 -32.49789 -31.71311 -29.64070 -28.15947 -27.24191 -25.94568 -25.28714 -23.24762 -21.98635 -21.08606 -19.44412 -17.74347 -16.96474 -16.90133 -16.35933 -16.09536 -15.84359 -15.16979 -15.04036 -14.57102 -14.43914 -13.69677 -13.58575 -13.42355 -12.87930 -12.63643 -12.41985 -12.39029 -12.24917 -12.06992 -11.59358 -11.44002 -11.37390 -11.06133 -10.93759 -10.52079 -10.19878 -9.96869 -9.66923 -9.57127 -9.30596 -8.69934 -8.58367 -8.01296 -7.62196 -6.08419 -4.07206 1.35631 1.57872 3.10338 3.30773 3.36603 3.38975 3.55209 3.89143 4.23111 4.39075 4.41319 4.89687 4.92562 5.18800 5.21935 5.24404 5.29818 5.36523 5.41562 5.42673 5.49200 5.65738 5.72993 5.77221 5.86967 6.02196 6.12038 6.43737 6.47497 6.64739 6.65769 6.81760 6.88875 7.15988 7.24225 7.28595 7.47524 7.62121 8.44192 8.47718 8.94335 9.14360 9.51910 11.04997 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.004856 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.589068 B = 5764.496807 C = 7033.637884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.105 3.895 4 C -0.077 4.077 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.149 4.149 8 C 0.174 3.826 9 N -0.696 5.696 10 C 0.699 3.301 11 O -0.565 6.565 12 N -0.608 5.608 13 C 0.084 3.916 14 C 0.230 3.770 15 C -0.530 4.530 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.097 4.097 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.402 0.598 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 1.498 18.589 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.028 3.972 4 C -0.078 4.078 5 C -0.144 4.144 6 C -0.126 4.126 7 C -0.170 4.170 8 C 0.078 3.922 9 N -0.345 5.345 10 C 0.401 3.599 11 O -0.440 6.440 12 N -0.343 5.343 13 C -0.060 4.060 14 C 0.109 3.891 15 C -0.568 4.568 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.118 4.118 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.826 0.970 18.314 18.556 hybrid contribution 0.268 -0.366 -0.513 0.684 sum 3.094 0.604 17.801 18.078 Atomic orbital electron populations 1.22747 0.81214 1.02782 0.99837 1.88008 1.19405 1.27309 1.95344 1.21320 0.89936 0.85201 1.00700 1.19441 0.93937 1.01311 0.93074 1.20905 0.94225 1.02092 0.97158 1.20793 0.93978 1.00595 0.97187 1.20879 0.99840 1.05029 0.91235 1.17522 0.91478 0.98561 0.84594 1.42912 1.22735 1.58951 1.09934 1.15886 0.84650 0.79381 0.80007 1.90909 1.17167 1.53879 1.82073 1.47128 1.14702 1.59743 1.12734 1.21619 0.83655 0.97203 1.03558 1.19621 0.94001 0.93303 0.82138 1.21347 1.33341 0.95952 1.06180 0.90792 1.24843 0.94568 0.97508 0.96047 1.69898 1.34838 1.34094 1.14799 0.86849 0.79341 0.85747 0.77735 1.19842 1.21078 1.19051 1.21368 0.93135 0.98207 0.99090 0.89647 0.94344 0.93835 0.92651 0.92208 0.86323 0.85880 0.85963 0.76085 0.93519 0.90043 0.92858 0.94995 0.94329 0.92564 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.82 10.69 -35.23 -0.38 -6.19 16 3 C 0.10 1.41 6.06 36.01 0.22 1.63 16 4 C -0.08 -1.15 5.51 -104.65 -0.58 -1.73 16 5 C -0.12 -1.57 9.70 -39.55 -0.38 -1.95 16 6 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16 7 C -0.15 -1.89 9.97 -39.39 -0.39 -2.28 16 8 C 0.17 2.81 6.30 -83.69 -0.53 2.28 16 9 N -0.70 -11.41 5.22 -14.22 -0.07 -11.48 16 10 C 0.70 14.91 8.12 -86.92 -0.71 14.20 16 11 O -0.56 -14.42 13.36 5.29 0.07 -14.35 16 12 N -0.61 -12.67 2.86 -188.74 -0.54 -13.21 16 13 C 0.08 1.25 10.24 59.85 0.61 1.87 16 14 C 0.23 5.67 4.23 -5.20 -0.02 5.65 16 15 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 16 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 19 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 23 C -0.10 -1.72 8.35 -39.40 -0.33 -2.05 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.40 5.11 6.52 -40.82 -0.27 4.85 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.05 0.64 6.30 -51.93 -0.33 0.32 16 36 H 0.03 0.74 7.13 -51.92 -0.37 0.37 16 37 H 0.04 1.02 6.85 -51.93 -0.36 0.67 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.15 3.05 6.23 -52.49 -0.33 2.72 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -35.69 329.60 -7.13 -42.82 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.45 Total: 3.56 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.83 Total: 3.86 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.16 Total: -51.67 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.31 Total: -20.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.69 -7.13 -42.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176548605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.408 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds