Wall clock time and date at job start Tue Mar 31 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00029 * 2 1 4 4 C 1.50700 * 109.47624 * 179.97438 * 3 2 1 5 5 C 1.38302 * 119.96501 * 270.27683 * 4 3 2 6 6 C 1.38256 * 120.14018 * 180.27012 * 5 4 3 7 7 C 1.38134 * 120.07291 * 359.45155 * 6 5 4 8 8 C 1.38847 * 119.92355 * 0.27080 * 7 6 5 9 9 N 1.39946 * 120.06879 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00274 * 144.91037 * 9 8 7 11 11 O 1.21583 * 119.99749 * 4.59423 * 10 9 8 12 12 N 1.34771 * 120.00056 * 184.58907 * 10 9 8 13 13 C 1.46508 * 119.99997 * 0.02562 * 12 10 9 14 14 C 1.46494 * 120.00040 * 180.02562 * 12 10 9 15 15 C 1.50696 * 109.47627 * 89.99983 * 14 12 10 16 16 H 1.07998 * 119.99753 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00243 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99847 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99974 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47462 * 89.99787 * 19 17 15 21 21 H 1.48501 * 109.46875 * 209.99550 * 19 17 15 22 22 H 1.48504 * 109.47320 * 329.99487 * 19 17 15 23 23 C 1.38093 * 119.96609 * 89.99291 * 4 3 2 24 24 H 1.09000 * 109.46543 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47009 * 300.00083 * 1 2 3 26 26 H 1.09000 * 109.46866 * 60.00676 * 1 2 3 27 27 H 1.09002 * 109.47439 * 59.99675 * 3 2 1 28 28 H 1.09004 * 109.47421 * 299.99637 * 3 2 1 29 29 H 1.08000 * 119.92894 * 0.02562 * 5 4 3 30 30 H 1.08006 * 119.96892 * 179.72033 * 6 5 4 31 31 H 1.07995 * 120.04107 * 180.25720 * 7 6 5 32 32 H 0.97008 * 119.99783 * 324.91315 * 9 8 7 33 33 H 1.09001 * 109.46873 * 90.00349 * 13 12 10 34 34 H 1.09001 * 109.47118 * 209.99609 * 13 12 10 35 35 H 1.08990 * 109.46990 * 329.99921 * 13 12 10 36 36 H 1.09008 * 109.47192 * 210.00338 * 14 12 10 37 37 H 1.09000 * 109.47160 * 329.99556 * 14 12 10 38 38 H 0.97004 * 120.00314 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03319 * 0.02849 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2002 1.1265 1.1991 6 6 5.5789 1.0230 1.2039 7 6 6.2731 0.9679 0.0109 8 6 5.5852 1.0222 -1.1939 9 7 6.2854 0.9671 -2.4043 10 6 5.7465 0.3366 -3.4666 11 8 4.6183 -0.1115 -3.3995 12 7 6.4582 0.2029 -4.6033 13 6 7.8179 0.7425 -4.6840 14 6 5.8722 -0.4819 -5.7581 15 6 5.1527 0.5195 -6.6243 16 1 5.1342 1.5621 -6.3429 17 6 4.5190 0.1051 -7.7766 18 7 3.8907 0.9791 -8.5321 19 14 4.5517 -1.6979 -8.2636 20 1 3.3831 -2.3932 -7.6670 21 1 4.4932 -1.8121 -9.7431 22 1 5.8049 -2.3219 -7.7682 23 6 4.2006 1.1318 -1.1954 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.6594 1.1645 2.1331 30 1 6.1135 0.9809 2.1414 31 1 7.3497 0.8829 0.0153 32 1 7.1588 1.3827 -2.4787 33 1 8.5302 -0.0181 -4.3640 34 1 8.0334 1.0322 -5.7124 35 1 7.9017 1.6146 -4.0356 36 1 6.6627 -0.9608 -6.3362 37 1 5.1663 -1.2373 -5.4129 38 1 3.4445 0.6876 -9.3426 39 1 3.6627 1.1745 -2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176548605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:51 Heat of formation + Delta-G solvation = -56.201010 kcal Electronic energy + Delta-G solvation = -21376.148638 eV Core-core repulsion = 18090.667327 eV Total energy + Delta-G solvation = -3285.481311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72210 -40.03348 -38.55631 -36.77689 -35.89779 -34.63334 -32.77158 -31.11896 -29.81443 -28.21849 -27.42255 -26.30045 -24.95640 -23.35843 -22.31010 -20.96358 -19.18207 -19.15243 -18.22855 -17.42865 -17.24823 -16.93493 -16.65833 -16.60036 -16.00649 -15.72383 -15.28154 -15.08307 -14.62567 -14.49078 -14.08343 -13.74276 -13.68638 -13.50691 -13.28785 -13.20565 -12.86131 -12.55148 -12.40493 -12.39328 -12.14511 -12.03240 -11.75996 -11.33117 -10.95747 -10.83592 -10.69350 -9.78466 -9.56500 -8.97760 -8.34974 -6.40180 0.29126 0.46207 1.32014 1.37406 1.45108 1.68541 2.12474 2.30590 2.69328 2.97593 3.01984 3.23117 3.86602 3.95787 4.18493 4.25246 4.29707 4.37397 4.42484 4.50482 4.53892 4.56696 4.65886 4.70867 4.78191 4.80436 4.86336 4.91707 5.06986 5.37302 5.43554 5.43812 5.55698 5.57110 5.70537 5.98814 6.12454 6.18884 6.25288 6.60637 6.98265 7.21652 7.57130 8.82221 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.004856 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.589068 B = 5764.496807 C = 7033.637884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.102 3.898 4 C -0.092 4.092 5 C -0.118 4.118 6 C -0.096 4.096 7 C -0.136 4.136 8 C 0.145 3.855 9 N -0.676 5.676 10 C 0.691 3.309 11 O -0.619 6.619 12 N -0.617 5.617 13 C 0.077 3.923 14 C 0.240 3.760 15 C -0.537 4.537 16 H 0.026 0.974 17 C 0.011 3.989 18 N -0.946 5.946 19 Si 0.949 3.051 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.235 1.235 23 C -0.133 4.133 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.421 0.579 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.018 0.982 38 H 0.269 0.731 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 0.407 21.474 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.026 3.974 4 C -0.093 4.093 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.156 4.156 8 C 0.050 3.950 9 N -0.327 5.327 10 C 0.393 3.607 11 O -0.499 6.499 12 N -0.352 5.352 13 C -0.065 4.065 14 C 0.117 3.883 15 C -0.576 4.576 16 H 0.044 0.956 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.158 1.158 23 C -0.154 4.154 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.168 0.832 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.261 0.739 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.239 -0.076 21.241 21.878 hybrid contribution -0.501 0.104 -1.281 1.380 sum 4.738 0.028 19.960 20.514 Atomic orbital electron populations 1.22945 0.79408 1.03805 1.00973 1.87946 1.21578 1.28381 1.95577 1.21420 0.89516 0.84873 1.01545 1.19674 0.94750 1.01681 0.93204 1.21314 0.95131 1.00197 0.97068 1.21350 0.93645 0.97930 0.98442 1.21254 1.01531 1.02931 0.89892 1.17822 0.91128 1.00605 0.85481 1.42562 1.23198 1.57938 1.08986 1.16160 0.84098 0.79440 0.81037 1.90876 1.19627 1.56144 1.83232 1.47116 1.16679 1.59811 1.11567 1.21953 0.81072 0.99357 1.04159 1.19285 0.94100 0.91974 0.82911 1.21573 1.34120 0.94774 1.07104 0.95570 1.25848 0.93902 1.02978 0.95931 1.70053 1.36137 1.36827 1.15618 0.85705 0.80338 0.79008 0.77821 1.20493 1.19815 1.15775 1.21161 0.94356 1.01594 0.98279 0.88772 0.91542 0.94309 0.89167 0.93864 0.83202 0.81408 0.82459 0.73901 0.89882 0.90736 0.90002 0.92399 0.96425 0.92247 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.91 10.69 -148.98 -1.59 -14.50 16 3 C 0.10 2.82 6.06 71.24 0.43 3.25 16 4 C -0.09 -2.78 5.51 -19.88 -0.11 -2.89 16 5 C -0.12 -2.62 9.70 22.29 0.22 -2.40 16 6 C -0.10 -1.77 10.04 22.25 0.22 -1.55 16 7 C -0.14 -2.99 9.97 22.39 0.22 -2.77 16 8 C 0.14 4.62 6.30 38.15 0.24 4.86 16 9 N -0.68 -22.05 5.22 -317.18 -1.65 -23.70 16 10 C 0.69 30.47 8.12 179.05 1.45 31.93 16 11 O -0.62 -33.83 13.36 -3.98 -0.05 -33.88 16 12 N -0.62 -25.93 2.86 -869.32 -2.48 -28.41 16 13 C 0.08 2.16 10.24 127.77 1.31 3.46 16 14 C 0.24 11.98 4.23 85.63 0.36 12.34 16 15 C -0.54 -32.32 9.94 25.60 0.25 -32.06 16 16 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 17 C 0.01 0.68 5.47 84.65 0.46 1.14 16 18 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 19 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.23 -9.93 6.54 99.48 0.65 -9.28 16 23 C -0.13 -4.98 8.35 22.39 0.19 -4.79 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 28 H 0.04 1.28 8.09 -2.39 -0.02 1.26 16 29 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.42 9.93 6.52 -92.70 -0.60 9.33 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.21 8.07 -2.39 -0.02 2.20 16 35 H 0.08 1.79 6.30 -2.39 -0.02 1.78 16 36 H 0.06 2.59 7.13 -2.38 -0.02 2.57 16 37 H 0.02 0.96 6.85 -2.39 -0.02 0.94 16 38 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 39 H 0.10 4.50 6.23 -2.91 -0.02 4.49 16 Total: -1.00 -85.57 329.60 3.30 -82.28 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.39 Total: 19.35 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.50 Total: 12.32 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -3.84 Total: -112.63 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.65 Total: -48.38 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -85.57 3.30 -82.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176548605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.075 kcal (2) G-P(sol) polarization free energy of solvation -85.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds