Wall clock time and date at job start Tue Mar 31 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46985 * 2 1 4 4 C 1.35900 * 117.00184 * 179.97438 * 3 2 1 5 5 C 1.38807 * 120.01871 * 359.72893 * 4 3 2 6 6 C 1.38166 * 120.08476 * 179.69464 * 5 4 3 7 7 C 1.38169 * 120.11946 * 0.59666 * 6 5 4 8 8 C 1.38882 * 120.04441 * 359.68076 * 7 6 5 9 9 N 1.39939 * 120.04177 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00388 * 324.88032 * 9 8 7 11 11 O 1.21589 * 119.99687 * 4.58025 * 10 9 8 12 12 N 1.34776 * 120.00209 * 184.58319 * 10 9 8 13 13 C 1.46505 * 119.99880 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00081 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.46464 * 90.00331 * 14 12 10 16 16 H 1.08002 * 120.00026 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99897 * 179.97438 * 15 14 12 18 18 N 1.31511 * 120.00062 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99820 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46966 * 89.99911 * 19 17 15 21 21 H 1.48505 * 109.47197 * 209.99721 * 19 17 15 22 22 H 1.48495 * 109.47019 * 329.99783 * 19 17 15 23 23 C 1.38585 * 120.02219 * 179.97438 * 4 3 2 24 24 H 1.08997 * 109.47266 * 300.00580 * 1 2 3 25 25 H 1.09002 * 109.46775 * 60.00152 * 1 2 3 26 26 H 1.08997 * 109.46850 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47159 * 119.99479 * 2 1 3 28 28 H 1.08988 * 109.47489 * 239.99966 * 2 1 3 29 29 H 1.07999 * 119.95856 * 359.97258 * 5 4 3 30 30 H 1.08001 * 119.94043 * 180.27647 * 6 5 4 31 31 H 1.08003 * 119.97598 * 179.69580 * 7 6 5 32 32 H 0.97000 * 119.99179 * 144.87806 * 9 8 7 33 33 H 1.08998 * 109.47174 * 89.99379 * 13 12 10 34 34 H 1.08996 * 109.46767 * 209.99841 * 13 12 10 35 35 H 1.08997 * 109.46786 * 329.99478 * 13 12 10 36 36 H 1.08994 * 109.47338 * 210.00044 * 14 12 10 37 37 H 1.08999 * 109.46949 * 330.00553 * 14 12 10 38 38 H 0.97004 * 120.00013 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.05996 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1996 0.4250 0.0067 6 6 5.5695 0.6045 0.0009 7 6 6.1018 1.8795 0.0014 8 6 5.2601 2.9843 0.0010 9 7 5.7992 4.2757 0.0009 10 6 6.9397 4.5300 0.6725 11 8 7.5447 3.6218 1.2089 12 7 7.4095 5.7908 0.7498 13 6 6.6801 6.8851 0.1040 14 6 8.6488 6.0673 1.4804 15 6 9.8214 5.9565 0.5402 16 1 9.6595 5.7056 -0.4978 17 6 11.1007 6.1763 1.0048 18 7 12.1240 6.0791 0.1845 19 14 11.3806 6.6108 2.7999 20 1 11.5757 5.3661 3.5859 21 1 12.5886 7.4663 2.9196 22 1 10.2001 7.3455 3.3212 23 6 3.8837 2.8059 0.0000 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.7865 -0.5729 0.0116 30 1 6.2256 -0.2535 0.0013 31 1 7.1730 2.0171 0.0018 32 1 5.3520 4.9878 -0.4827 33 1 5.9591 7.3049 0.8054 34 1 7.3833 7.6598 -0.2015 35 1 6.1554 6.5046 -0.7723 36 1 8.6094 7.0746 1.8947 37 1 8.7623 5.3457 2.2894 38 1 13.0242 6.2334 0.5115 39 1 3.2270 3.6633 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176554758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:32 Heat of formation + Delta-G solvation = -26.755809 kcal Electronic energy + Delta-G solvation = -21083.679789 eV Core-core repulsion = 17799.475318 eV Total energy + Delta-G solvation = -3284.204472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48745 -39.55767 -37.45025 -35.03761 -34.27983 -32.47948 -32.15542 -29.99831 -29.10732 -28.10433 -25.97411 -24.14171 -22.78773 -22.57604 -21.17651 -19.56056 -18.40301 -17.50021 -16.97092 -16.25583 -16.12889 -15.95137 -15.57774 -14.84563 -14.68820 -14.02584 -13.61229 -13.50074 -13.43579 -13.29781 -12.91832 -12.72363 -12.43361 -12.19504 -12.10675 -11.98828 -11.65053 -11.48026 -11.02989 -10.93849 -10.85701 -10.53034 -10.19350 -9.96894 -9.57771 -9.31217 -8.58969 -8.36410 -7.95160 -7.62653 -6.08722 -4.07676 1.40670 1.61235 2.85705 3.28453 3.31925 3.36587 3.38705 3.64553 4.04118 4.36840 4.40124 4.66013 4.69778 4.92120 4.98017 5.11227 5.21180 5.23900 5.42060 5.45298 5.49763 5.56607 5.64662 5.74045 5.75816 5.86685 6.05522 6.34554 6.37217 6.46775 6.65820 6.74005 6.87829 7.11344 7.22913 7.43863 7.46156 7.61122 8.41740 8.47095 8.94085 9.11323 9.51321 11.04652 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037004 B = 0.003392 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.488307 B = 8253.066322 C = 8571.433190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.142 3.858 5 C -0.233 4.233 6 C -0.063 4.063 7 C -0.154 4.154 8 C 0.216 3.784 9 N -0.694 5.694 10 C 0.701 3.299 11 O -0.565 6.565 12 N -0.607 5.607 13 C 0.083 3.917 14 C 0.230 3.770 15 C -0.530 4.530 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.189 4.189 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.403 0.597 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.526 -7.871 -1.396 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.097 3.903 5 C -0.253 4.253 6 C -0.082 4.082 7 C -0.175 4.175 8 C 0.119 3.881 9 N -0.343 5.343 10 C 0.403 3.597 11 O -0.441 6.441 12 N -0.342 5.342 13 C -0.061 4.061 14 C 0.109 3.891 15 C -0.568 4.568 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.211 4.211 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.241 0.759 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.950 -8.247 -0.963 22.535 hybrid contribution 0.176 0.432 0.540 0.714 sum -20.774 -7.816 -0.422 22.200 Atomic orbital electron populations 1.21775 0.92959 1.02703 1.03462 1.22738 0.95589 0.82215 1.01436 1.86023 1.19255 1.29056 1.88971 1.18494 0.81914 0.93428 0.96471 1.21115 0.94408 0.97587 1.12160 1.20836 0.94015 0.97017 0.96304 1.21427 1.01835 0.90831 1.03391 1.17185 0.90530 0.84418 0.95918 1.42906 1.27095 1.09727 1.54570 1.15835 0.80068 0.84097 0.79707 1.90892 1.58706 1.43284 1.51233 1.47135 1.26829 1.04285 1.55968 1.21633 0.96895 0.91435 0.96153 1.19632 0.80538 0.96247 0.92657 1.21347 0.89709 1.48194 0.97598 0.90757 1.24850 0.95814 0.94759 0.97591 1.69898 0.98931 1.49552 1.35192 0.86846 0.78055 0.79030 0.85705 1.19860 1.21086 1.19048 1.19925 0.93182 0.95495 1.12507 0.91574 0.91579 0.90500 0.92073 0.92076 0.85919 0.85602 0.83470 0.75949 0.93447 0.89990 0.92801 0.94944 0.94319 0.92549 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.46 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.82 10.13 -19.42 -0.20 -4.02 16 4 C 0.14 1.90 6.68 -39.24 -0.26 1.64 16 5 C -0.23 -2.93 9.04 -39.40 -0.36 -3.28 16 6 C -0.06 -0.88 10.03 -39.63 -0.40 -1.28 16 7 C -0.15 -2.63 8.69 -39.37 -0.34 -2.98 16 8 C 0.22 3.51 6.30 -83.71 -0.53 2.98 16 9 N -0.69 -11.40 5.21 -14.24 -0.07 -11.47 16 10 C 0.70 14.78 8.12 -86.92 -0.71 14.07 16 11 O -0.57 -14.12 13.36 5.29 0.07 -14.05 16 12 N -0.61 -12.55 2.86 -188.74 -0.54 -13.09 16 13 C 0.08 1.24 10.24 59.85 0.61 1.85 16 14 C 0.23 5.61 4.23 -5.19 -0.02 5.59 16 15 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 16 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 23 C -0.19 -2.66 9.90 -39.25 -0.39 -3.05 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 28 H 0.06 0.45 7.67 -51.94 -0.40 0.05 16 29 H 0.12 1.21 6.29 -52.49 -0.33 0.88 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.15 2.93 6.22 -52.48 -0.33 2.61 16 32 H 0.40 5.22 6.52 -40.82 -0.27 4.95 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.05 0.65 6.30 -51.93 -0.33 0.32 16 36 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 37 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -34.66 325.88 -7.28 -41.95 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.32 Total: 3.67 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.24 Total: 2.13 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.16 Total: -51.44 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.13 Total: -18.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.66 -7.28 -41.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176554758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.191 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds