Wall clock time and date at job start Tue Mar 31 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46985 * 2 1 4 4 C 1.35900 * 117.00184 * 179.97438 * 3 2 1 5 5 C 1.38807 * 120.01871 * 359.72893 * 4 3 2 6 6 C 1.38166 * 120.08476 * 179.69464 * 5 4 3 7 7 C 1.38169 * 120.11946 * 0.59666 * 6 5 4 8 8 C 1.38882 * 120.04441 * 359.68076 * 7 6 5 9 9 N 1.39939 * 120.04177 * 180.02562 * 8 7 6 10 10 C 1.34772 * 120.00388 * 324.88032 * 9 8 7 11 11 O 1.21589 * 119.99687 * 4.58025 * 10 9 8 12 12 N 1.34776 * 120.00209 * 184.58319 * 10 9 8 13 13 C 1.46505 * 119.99880 * 0.02562 * 12 10 9 14 14 C 1.46500 * 120.00081 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.46464 * 90.00331 * 14 12 10 16 16 H 1.08002 * 120.00026 * 0.02562 * 15 14 12 17 17 C 1.37877 * 119.99897 * 179.97438 * 15 14 12 18 18 N 1.31511 * 120.00062 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99820 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46966 * 89.99911 * 19 17 15 21 21 H 1.48505 * 109.47197 * 209.99721 * 19 17 15 22 22 H 1.48495 * 109.47019 * 329.99783 * 19 17 15 23 23 C 1.38585 * 120.02219 * 179.97438 * 4 3 2 24 24 H 1.08997 * 109.47266 * 300.00580 * 1 2 3 25 25 H 1.09002 * 109.46775 * 60.00152 * 1 2 3 26 26 H 1.08997 * 109.46850 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47159 * 119.99479 * 2 1 3 28 28 H 1.08988 * 109.47489 * 239.99966 * 2 1 3 29 29 H 1.07999 * 119.95856 * 359.97258 * 5 4 3 30 30 H 1.08001 * 119.94043 * 180.27647 * 6 5 4 31 31 H 1.08003 * 119.97598 * 179.69580 * 7 6 5 32 32 H 0.97000 * 119.99179 * 144.87806 * 9 8 7 33 33 H 1.08998 * 109.47174 * 89.99379 * 13 12 10 34 34 H 1.08996 * 109.46767 * 209.99841 * 13 12 10 35 35 H 1.08997 * 109.46786 * 329.99478 * 13 12 10 36 36 H 1.08994 * 109.47338 * 210.00044 * 14 12 10 37 37 H 1.08999 * 109.46949 * 330.00553 * 14 12 10 38 38 H 0.97004 * 120.00013 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.05996 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1996 0.4250 0.0067 6 6 5.5695 0.6045 0.0009 7 6 6.1018 1.8795 0.0014 8 6 5.2601 2.9843 0.0010 9 7 5.7992 4.2757 0.0009 10 6 6.9397 4.5300 0.6725 11 8 7.5447 3.6218 1.2089 12 7 7.4095 5.7908 0.7498 13 6 6.6801 6.8851 0.1040 14 6 8.6488 6.0673 1.4804 15 6 9.8214 5.9565 0.5402 16 1 9.6595 5.7056 -0.4978 17 6 11.1007 6.1763 1.0048 18 7 12.1240 6.0791 0.1845 19 14 11.3806 6.6108 2.7999 20 1 11.5757 5.3661 3.5859 21 1 12.5886 7.4663 2.9196 22 1 10.2001 7.3455 3.3212 23 6 3.8837 2.8059 0.0000 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.7865 -0.5729 0.0116 30 1 6.2256 -0.2535 0.0013 31 1 7.1730 2.0171 0.0018 32 1 5.3520 4.9878 -0.4827 33 1 5.9591 7.3049 0.8054 34 1 7.3833 7.6598 -0.2015 35 1 6.1554 6.5046 -0.7723 36 1 8.6094 7.0746 1.8947 37 1 8.7623 5.3457 2.2894 38 1 13.0242 6.2334 0.5115 39 1 3.2270 3.6633 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176554758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:32 Heat of formation + Delta-G solvation = -50.458593 kcal Electronic energy + Delta-G solvation = -21084.707619 eV Core-core repulsion = 17799.475318 eV Total energy + Delta-G solvation = -3285.232301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.80234 -40.74187 -38.60787 -36.69387 -35.70736 -34.58238 -32.86969 -31.24784 -30.43458 -29.63621 -27.43522 -25.25668 -24.27733 -23.72074 -22.37823 -21.00733 -19.58050 -19.14410 -18.92286 -17.43438 -17.07347 -17.01300 -16.84444 -16.53123 -16.15315 -15.67201 -15.13182 -14.68550 -14.49639 -14.43688 -14.23942 -14.03020 -13.69283 -13.35536 -13.32349 -13.09112 -13.02812 -12.77616 -12.64025 -12.42493 -12.04261 -11.86326 -11.74406 -11.68746 -11.29473 -10.96043 -10.81736 -9.62388 -9.36743 -8.94201 -8.32971 -6.38285 0.27245 0.47435 1.34115 1.39189 1.46976 1.58799 2.10081 2.32223 2.33085 2.83305 2.99360 3.04110 3.86144 4.08313 4.11805 4.18851 4.24445 4.32982 4.34338 4.43265 4.53529 4.60741 4.67707 4.74283 4.87010 4.92332 4.94826 4.99472 5.20434 5.29844 5.32544 5.35430 5.45007 5.54273 5.58002 5.90438 5.97629 6.26461 6.47336 6.62805 6.95508 7.23256 7.54502 8.84126 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037004 B = 0.003392 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.488307 B = 8253.066322 C = 8571.433190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.144 3.856 5 C -0.222 4.222 6 C -0.063 4.063 7 C -0.186 4.186 8 C 0.195 3.805 9 N -0.675 5.675 10 C 0.695 3.305 11 O -0.615 6.615 12 N -0.616 5.616 13 C 0.075 3.925 14 C 0.239 3.761 15 C -0.536 4.536 16 H 0.026 0.974 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.950 3.050 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.235 1.235 23 C -0.186 4.186 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.420 0.580 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.268 0.732 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.567 -7.975 -0.358 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.241 6.241 4 C 0.098 3.902 5 C -0.241 4.241 6 C -0.082 4.082 7 C -0.207 4.207 8 C 0.099 3.901 9 N -0.326 5.326 10 C 0.396 3.604 11 O -0.494 6.494 12 N -0.351 5.351 13 C -0.067 4.067 14 C 0.117 3.883 15 C -0.575 4.575 16 H 0.045 0.955 17 C -0.188 4.188 18 N -0.586 5.586 19 Si 0.772 3.228 20 H -0.203 1.203 21 H -0.200 1.200 22 H -0.158 1.158 23 C -0.207 4.207 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.174 0.826 30 H 0.162 0.838 31 H 0.125 0.875 32 H 0.261 0.739 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.080 -8.326 0.030 25.478 hybrid contribution 0.988 0.325 0.087 1.044 sum -23.092 -8.001 0.117 24.439 Atomic orbital electron populations 1.21808 0.91421 1.04173 1.03192 1.23110 0.96877 0.80651 1.02509 1.86037 1.18064 1.31505 1.88517 1.18621 0.82900 0.93315 0.95385 1.21425 0.93442 0.99094 1.10129 1.21030 0.95249 0.96291 0.95598 1.21276 1.00161 0.92937 1.06277 1.17324 0.91457 0.83781 0.97559 1.42564 1.25696 1.10614 1.53747 1.16063 0.80882 0.83675 0.79749 1.90856 1.60439 1.44793 1.53335 1.47123 1.26156 1.05634 1.56150 1.21961 0.97060 0.89790 0.97843 1.19313 0.80700 0.96818 0.91493 1.21569 0.91871 1.47769 0.96300 0.95518 1.25862 0.95326 0.94562 1.03025 1.70055 0.99632 1.51102 1.37861 0.85692 0.79328 0.78899 0.78864 1.20306 1.20040 1.15785 1.20042 0.92158 0.96852 1.11656 0.91960 0.91750 0.88165 0.91116 0.90793 0.82641 0.83803 0.87470 0.73936 0.89921 0.90615 0.90084 0.92398 0.96100 0.92268 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.33 -6.88 10.13 -92.42 -0.94 -7.81 16 4 C 0.14 3.51 6.68 22.49 0.15 3.66 16 5 C -0.22 -5.04 9.04 22.39 0.20 -4.84 16 6 C -0.06 -1.73 10.03 22.24 0.22 -1.51 16 7 C -0.19 -6.59 8.69 22.41 0.19 -6.39 16 8 C 0.19 6.32 6.30 38.13 0.24 6.56 16 9 N -0.68 -22.16 5.21 -317.23 -1.65 -23.82 16 10 C 0.69 29.98 8.12 179.06 1.45 31.44 16 11 O -0.61 -32.29 13.36 -4.00 -0.05 -32.35 16 12 N -0.62 -25.50 2.86 -869.32 -2.48 -27.98 16 13 C 0.08 2.12 10.24 127.77 1.31 3.43 16 14 C 0.24 11.72 4.23 85.63 0.36 12.09 16 15 C -0.54 -31.83 9.94 25.60 0.25 -31.57 16 16 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 17 C 0.01 0.60 5.47 84.66 0.46 1.06 16 18 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 19 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.23 -9.77 6.54 99.48 0.65 -9.12 16 23 C -0.19 -4.91 9.90 22.49 0.22 -4.69 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 28 H 0.07 0.81 7.67 -2.39 -0.02 0.80 16 29 H 0.16 2.46 6.29 -2.91 -0.02 2.44 16 30 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.11 4.67 6.22 -2.91 -0.02 4.65 16 32 H 0.42 10.31 6.52 -92.71 -0.60 9.71 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 35 H 0.08 1.80 6.30 -2.39 -0.02 1.79 16 36 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 37 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 38 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -80.08 325.88 3.67 -76.41 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.40 Total: 19.61 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.21 Total: 9.54 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.84 Total: -111.83 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.99 Total: -40.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -80.08 3.67 -76.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176554758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.952 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds