Wall clock time and date at job start Tue Mar 31 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47303 * 2 1 4 4 C 1.34403 * 117.00153 * 179.97438 * 3 2 1 5 5 C 1.36391 * 120.00091 * 179.97438 * 4 3 2 6 6 C 1.43208 * 119.99760 * 0.02562 * 5 4 3 7 7 N 4.90339 * 99.07581 * 0.02562 * 2 1 3 8 8 C 1.46925 * 120.00399 * 180.02562 * 5 4 3 9 9 O 1.21692 * 119.99636 * 297.75223 * 8 5 4 10 10 N 1.34772 * 120.00452 * 117.74637 * 8 5 4 11 11 C 1.36961 * 120.00344 * 215.14766 * 10 8 5 12 12 H 1.08003 * 120.00463 * 240.28170 * 11 10 8 13 13 C 1.38974 * 120.00089 * 60.28074 * 11 10 8 14 14 N 1.31420 * 119.99657 * 49.60424 * 13 11 10 15 15 Si 1.86795 * 120.00433 * 229.60700 * 13 11 10 16 16 H 1.48502 * 109.47103 * 64.99685 * 15 13 11 17 17 H 1.48499 * 109.47551 * 185.00259 * 15 13 11 18 18 H 1.48506 * 109.46989 * 305.00147 * 15 13 11 19 19 C 1.46505 * 119.99789 * 35.15216 * 10 8 5 20 20 C 1.54969 * 110.92066 * 302.92964 * 19 10 8 21 21 C 1.54270 * 104.15849 * 156.29555 * 20 19 10 22 22 C 1.53873 * 106.63826 * 336.44808 * 21 20 19 23 23 C 1.54260 * 106.60275 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46763 * 59.99824 * 1 2 3 25 25 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46872 * 299.99855 * 1 2 3 27 27 H 1.08995 * 109.47073 * 239.99676 * 2 1 3 28 28 H 1.09001 * 109.46924 * 119.99645 * 2 1 3 29 29 H 1.07997 * 119.99664 * 0.02562 * 4 3 2 30 30 H 0.97000 * 120.00212 * 184.95788 * 14 13 11 31 31 H 1.08994 * 110.67188 * 179.62685 * 19 10 8 32 32 H 1.09007 * 110.47513 * 37.64429 * 20 19 10 33 33 H 1.08997 * 110.53324 * 274.98063 * 20 19 10 34 34 H 1.08996 * 110.02943 * 217.13696 * 21 20 19 35 35 H 1.09000 * 110.03099 * 95.75618 * 21 20 19 36 36 H 1.09005 * 110.02986 * 119.26278 * 22 21 20 37 37 H 1.08997 * 110.02703 * 240.63861 * 22 21 20 38 38 H 1.08998 * 110.48849 * 142.28829 * 23 22 21 39 39 H 1.09004 * 110.48530 * 264.93720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3465 1.5450 0.0005 5 6 3.8679 2.8054 0.0000 6 6 2.9955 3.9410 -0.0005 7 7 2.3035 4.8420 0.0022 8 6 5.3244 2.9979 0.0001 9 8 5.9918 2.5915 0.9330 10 7 5.9214 3.6245 -1.0331 11 6 7.1662 3.2301 -1.4464 12 1 7.9895 3.9287 -1.4231 13 6 7.3699 1.9309 -1.8959 14 7 6.5654 1.4138 -2.7972 15 14 8.7871 0.9197 -1.2189 16 1 8.5687 0.6682 0.2283 17 1 8.8602 -0.3758 -1.9410 18 1 10.0591 1.6630 -1.4057 19 6 5.2389 4.7276 -1.7140 20 6 3.8603 4.2740 -2.2576 21 6 3.0497 5.5818 -2.3688 22 6 3.6854 6.5793 -1.3846 23 6 4.8604 5.8432 -0.7084 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0043 0.6885 0.0005 30 1 6.6628 0.4847 -3.0582 31 1 5.8582 5.1258 -2.5176 32 1 3.3823 3.5871 -1.5591 33 1 3.9699 3.8086 -3.2371 34 1 2.0097 5.4007 -2.0973 35 1 3.1075 5.9717 -3.3850 36 1 4.0525 7.4529 -1.9234 37 1 2.9536 6.8829 -0.6360 38 1 5.6999 6.5220 -0.5579 39 1 4.5438 5.4101 0.2405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178968030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:58 Heat of formation + Delta-G solvation = 20.993892 kcal Electronic energy + Delta-G solvation = -22886.504430 eV Core-core repulsion = 19604.370541 eV Total energy + Delta-G solvation = -3282.133889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.10021 -38.71393 -37.17877 -35.34686 -33.72721 -32.68515 -31.77729 -30.55339 -28.05131 -27.02574 -24.95736 -23.44354 -22.99088 -20.84458 -19.74020 -19.61861 -18.11397 -16.90090 -16.35153 -16.05671 -15.94807 -15.22779 -14.82315 -14.28440 -14.07550 -13.80934 -13.40581 -13.07723 -12.96480 -12.76654 -12.55025 -12.02490 -11.92400 -11.85307 -11.46142 -11.34123 -11.21734 -11.05259 -11.00493 -10.73101 -10.58836 -10.48072 -10.41106 -10.22149 -9.88437 -9.69829 -8.76639 -8.47469 -8.01957 -7.32970 -6.45207 -4.06558 1.70420 2.96365 3.26424 3.33179 3.33601 3.49466 3.69203 4.00901 4.25239 4.52671 4.73796 4.82318 4.83132 4.96700 5.11289 5.27477 5.35945 5.37970 5.43412 5.57074 5.66324 5.89426 5.97495 6.04662 6.17115 6.22860 6.29848 6.34657 6.44305 6.52156 6.59164 6.65872 6.84445 7.03885 7.04175 7.29674 7.44064 8.20818 8.23606 8.85240 8.97157 9.26181 9.98582 10.39626 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.008894 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.382685 B = 3147.362666 C = 4580.400358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.317 6.317 4 C 0.138 3.862 5 C -0.160 4.160 6 C 0.283 3.717 7 N -0.445 5.445 8 C 0.564 3.436 9 O -0.542 6.542 10 N -0.445 5.445 11 C -0.362 4.362 12 H 0.077 0.923 13 C 0.093 3.907 14 N -0.797 5.797 15 Si 0.865 3.135 16 H -0.262 1.262 17 H -0.290 1.290 18 H -0.269 1.269 19 C 0.133 3.867 20 C -0.165 4.165 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.144 4.144 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.445 -2.601 0.863 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.229 6.229 4 C 0.068 3.932 5 C -0.169 4.169 6 C -0.027 4.027 7 N -0.126 5.126 8 C 0.351 3.649 9 O -0.422 6.422 10 N -0.165 5.165 11 C -0.486 4.486 12 H 0.095 0.905 13 C -0.122 4.122 14 N -0.426 5.426 15 Si 0.689 3.311 16 H -0.187 1.187 17 H -0.216 1.216 18 H -0.193 1.193 19 C 0.029 3.971 20 C -0.203 4.203 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.183 4.183 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.324 -1.438 1.150 10.487 hybrid contribution 0.987 -1.241 -0.027 1.586 sum -9.337 -2.679 1.123 9.778 Atomic orbital electron populations 1.21769 0.92817 1.02746 1.03680 1.23345 0.96132 0.80536 1.02191 1.86160 1.20356 1.30026 1.86329 1.22964 0.83118 0.96502 0.90636 1.18094 0.93771 0.87129 1.17945 1.24474 0.93208 0.93099 0.91960 1.81037 1.09787 1.09201 1.12547 1.17240 0.83388 0.81776 0.82541 1.90669 1.65245 1.53442 1.32837 1.42796 1.16295 1.30623 1.26818 1.18473 0.85075 0.97606 1.47456 0.90508 1.25373 0.97126 0.98828 0.90868 1.70545 1.39951 1.14314 1.17770 0.87028 0.83642 0.78866 0.81602 1.18697 1.21606 1.19350 1.22378 0.92617 0.88086 0.94017 1.23707 0.96823 0.97394 1.02405 1.22138 0.99610 0.95822 0.98361 1.22065 0.97371 0.97592 0.98390 1.23003 0.97631 0.98491 0.99183 0.91420 0.90313 0.91502 0.91161 0.91295 0.83487 0.92184 0.89201 0.88760 0.91240 0.91746 0.92651 0.92799 0.91272 0.91983 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.05 0.55 6.84 37.16 0.25 0.80 16 3 O -0.32 -4.81 9.51 -15.03 -0.14 -4.95 16 4 C 0.14 2.41 10.16 30.07 0.31 2.71 16 5 C -0.16 -3.32 3.82 -105.12 -0.40 -3.72 16 6 C 0.28 5.69 8.06 -22.47 -0.18 5.51 16 7 N -0.45 -8.82 12.85 35.87 0.46 -8.35 16 8 C 0.56 13.78 5.49 -12.75 -0.07 13.71 16 9 O -0.54 -14.73 17.41 5.20 0.09 -14.64 16 10 N -0.44 -11.01 2.61 -106.95 -0.28 -11.29 16 11 C -0.36 -9.65 8.49 -14.99 -0.13 -9.78 16 12 H 0.08 2.08 8.06 -52.48 -0.42 1.65 16 13 C 0.09 2.42 5.03 -17.46 -0.09 2.33 16 14 N -0.80 -20.49 13.94 55.50 0.77 -19.71 16 15 Si 0.86 20.16 29.69 -169.99 -5.05 15.12 16 16 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.13 2.89 3.33 -65.89 -0.22 2.67 16 20 C -0.16 -3.31 5.62 -25.03 -0.14 -3.45 16 21 C -0.12 -2.14 5.81 -25.61 -0.15 -2.29 16 22 C -0.12 -2.03 5.83 -25.62 -0.15 -2.18 16 23 C -0.14 -2.86 5.68 -25.08 -0.14 -3.00 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.15 2.36 8.00 -52.49 -0.42 1.94 16 30 H 0.27 6.42 8.32 -40.82 -0.34 6.08 16 31 H 0.09 1.97 7.95 -51.93 -0.41 1.56 16 32 H 0.10 1.96 2.42 -89.40 -0.22 1.75 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.16 6.84 -51.93 -0.36 0.80 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.23 6.97 -51.93 -0.36 0.87 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.32 4.96 -51.93 -0.26 1.07 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -29.89 318.57 -5.46 -35.34 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.39 Total: 1.29 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.73 Total: 2.39 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.96 Total: -39.36 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.05 Total: 15.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.89 -5.46 -35.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178968030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.338 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds