Wall clock time and date at job start Tue Mar 31 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47303 * 2 1 4 4 C 1.34403 * 117.00153 * 179.97438 * 3 2 1 5 5 C 1.36391 * 120.00091 * 179.97438 * 4 3 2 6 6 C 1.43208 * 119.99760 * 0.02562 * 5 4 3 7 7 N 4.90339 * 99.07581 * 0.02562 * 2 1 3 8 8 C 1.46925 * 120.00399 * 180.02562 * 5 4 3 9 9 O 1.21692 * 119.99636 * 297.75223 * 8 5 4 10 10 N 1.34772 * 120.00452 * 117.74637 * 8 5 4 11 11 C 1.36961 * 120.00344 * 215.14766 * 10 8 5 12 12 H 1.08003 * 120.00463 * 240.28170 * 11 10 8 13 13 C 1.38974 * 120.00089 * 60.28074 * 11 10 8 14 14 N 1.31420 * 119.99657 * 49.60424 * 13 11 10 15 15 Si 1.86795 * 120.00433 * 229.60700 * 13 11 10 16 16 H 1.48502 * 109.47103 * 64.99685 * 15 13 11 17 17 H 1.48499 * 109.47551 * 185.00259 * 15 13 11 18 18 H 1.48506 * 109.46989 * 305.00147 * 15 13 11 19 19 C 1.46505 * 119.99789 * 35.15216 * 10 8 5 20 20 C 1.54969 * 110.92066 * 302.92964 * 19 10 8 21 21 C 1.54270 * 104.15849 * 156.29555 * 20 19 10 22 22 C 1.53873 * 106.63826 * 336.44808 * 21 20 19 23 23 C 1.54260 * 106.60275 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46763 * 59.99824 * 1 2 3 25 25 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46872 * 299.99855 * 1 2 3 27 27 H 1.08995 * 109.47073 * 239.99676 * 2 1 3 28 28 H 1.09001 * 109.46924 * 119.99645 * 2 1 3 29 29 H 1.07997 * 119.99664 * 0.02562 * 4 3 2 30 30 H 0.97000 * 120.00212 * 184.95788 * 14 13 11 31 31 H 1.08994 * 110.67188 * 179.62685 * 19 10 8 32 32 H 1.09007 * 110.47513 * 37.64429 * 20 19 10 33 33 H 1.08997 * 110.53324 * 274.98063 * 20 19 10 34 34 H 1.08996 * 110.02943 * 217.13696 * 21 20 19 35 35 H 1.09000 * 110.03099 * 95.75618 * 21 20 19 36 36 H 1.09005 * 110.02986 * 119.26278 * 22 21 20 37 37 H 1.08997 * 110.02703 * 240.63861 * 22 21 20 38 38 H 1.08998 * 110.48849 * 142.28829 * 23 22 21 39 39 H 1.09004 * 110.48530 * 264.93720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3465 1.5450 0.0005 5 6 3.8679 2.8054 0.0000 6 6 2.9955 3.9410 -0.0005 7 7 2.3035 4.8420 0.0022 8 6 5.3244 2.9979 0.0001 9 8 5.9918 2.5915 0.9330 10 7 5.9214 3.6245 -1.0331 11 6 7.1662 3.2301 -1.4464 12 1 7.9895 3.9287 -1.4231 13 6 7.3699 1.9309 -1.8959 14 7 6.5654 1.4138 -2.7972 15 14 8.7871 0.9197 -1.2189 16 1 8.5687 0.6682 0.2283 17 1 8.8602 -0.3758 -1.9410 18 1 10.0591 1.6630 -1.4057 19 6 5.2389 4.7276 -1.7140 20 6 3.8603 4.2740 -2.2576 21 6 3.0497 5.5818 -2.3688 22 6 3.6854 6.5793 -1.3846 23 6 4.8604 5.8432 -0.7084 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0043 0.6885 0.0005 30 1 6.6628 0.4847 -3.0582 31 1 5.8582 5.1258 -2.5176 32 1 3.3823 3.5871 -1.5591 33 1 3.9699 3.8086 -3.2371 34 1 2.0097 5.4007 -2.0973 35 1 3.1075 5.9717 -3.3850 36 1 4.0525 7.4529 -1.9234 37 1 2.9536 6.8829 -0.6360 38 1 5.6999 6.5220 -0.5579 39 1 4.5438 5.4101 0.2405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178968030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:57 Heat of formation + Delta-G solvation = 3.325141 kcal Electronic energy + Delta-G solvation = -22887.270605 eV Core-core repulsion = 19604.370541 eV Total energy + Delta-G solvation = -3282.900064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72954 -40.01041 -38.93336 -36.95180 -35.54840 -34.06373 -33.44966 -31.75489 -29.59735 -28.68661 -26.74077 -24.89284 -24.00266 -22.51805 -21.36248 -21.10184 -19.81048 -18.53188 -17.89969 -17.42110 -17.06309 -16.85111 -16.62917 -16.06734 -15.68363 -15.56384 -14.88639 -14.70647 -14.13131 -13.99071 -13.84945 -13.45237 -13.43954 -13.36914 -13.12309 -12.90815 -12.75081 -12.48502 -12.37735 -12.26429 -12.12265 -11.98325 -11.91995 -11.89028 -11.44046 -11.21869 -10.66550 -10.44887 -9.51968 -9.19950 -8.39203 -6.08104 0.24847 1.30248 1.45700 1.57274 1.63234 1.78424 2.13140 2.32355 2.48987 2.72926 3.10196 3.24226 3.76969 3.82096 3.83420 4.00443 4.08336 4.16792 4.33745 4.39772 4.49706 4.57952 4.68536 4.71203 4.79483 4.85410 4.95211 4.97050 5.00191 5.09981 5.19963 5.24356 5.31041 5.38603 5.48192 5.52597 6.05568 6.23672 6.67394 6.92047 7.04019 7.37841 8.06506 8.44593 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.008894 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.382685 B = 3147.362666 C = 4580.400358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.324 6.324 4 C 0.182 3.818 5 C -0.207 4.207 6 C 0.288 3.712 7 N -0.448 5.448 8 C 0.564 3.436 9 O -0.584 6.584 10 N -0.455 5.455 11 C -0.394 4.394 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.811 5.811 15 Si 0.914 3.086 16 H -0.283 1.283 17 H -0.270 1.270 18 H -0.265 1.265 19 C 0.130 3.870 20 C -0.162 4.162 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.140 4.140 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.162 0.838 30 H 0.277 0.723 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 -3.638 0.425 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.235 6.235 4 C 0.110 3.890 5 C -0.216 4.216 6 C -0.022 4.022 7 N -0.129 5.129 8 C 0.352 3.648 9 O -0.466 6.466 10 N -0.175 5.175 11 C -0.518 4.518 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.440 5.440 15 Si 0.737 3.263 16 H -0.209 1.209 17 H -0.195 1.195 18 H -0.189 1.189 19 C 0.026 3.974 20 C -0.200 4.200 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.179 4.179 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.178 0.822 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.808 -2.480 0.678 12.084 hybrid contribution 1.362 -1.029 0.128 1.712 sum -10.446 -3.508 0.807 11.049 Atomic orbital electron populations 1.21827 0.91215 1.04540 1.03150 1.23846 0.97396 0.78140 1.04012 1.86168 1.18892 1.33633 1.84767 1.23059 0.84289 0.95719 0.85912 1.17572 0.91845 0.88691 1.23465 1.24343 0.93175 0.92996 0.91699 1.81012 1.09898 1.08744 1.13218 1.17627 0.84933 0.80576 0.81617 1.90618 1.66845 1.55009 1.34152 1.42901 1.16206 1.31359 1.27069 1.18490 0.85905 0.98406 1.49034 0.92309 1.25831 0.99018 0.99003 0.90680 1.70499 1.40864 1.14972 1.17660 0.86265 0.81708 0.78587 0.79697 1.20923 1.19521 1.18928 1.22400 0.93111 0.87743 0.94175 1.23635 0.96156 0.98677 1.01522 1.22091 0.98982 0.94496 0.99556 1.22020 0.96213 0.98003 0.98318 1.22946 0.98778 0.98064 0.98091 0.92119 0.87319 0.91884 0.89708 0.89190 0.82155 0.91236 0.90169 0.88905 0.92331 0.91728 0.90682 0.90442 0.91308 0.91687 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.29 71.98 0.74 -1.38 16 2 C 0.04 0.70 6.84 71.98 0.49 1.19 16 3 O -0.32 -9.14 9.51 -76.71 -0.73 -9.87 16 4 C 0.18 6.11 10.16 67.39 0.68 6.80 16 5 C -0.21 -8.53 3.82 -20.19 -0.08 -8.61 16 6 C 0.29 11.47 8.06 88.33 0.71 12.18 16 7 N -0.45 -17.35 12.85 0.13 0.00 -17.35 16 8 C 0.56 28.11 5.49 86.52 0.48 28.58 16 9 O -0.58 -32.57 17.41 -4.32 -0.08 -32.65 16 10 N -0.46 -23.08 2.61 -610.49 -1.59 -24.68 16 11 C -0.39 -21.59 8.49 84.07 0.71 -20.87 16 12 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 13 C 0.07 3.61 5.03 84.93 0.43 4.04 16 14 N -0.81 -41.42 13.94 21.67 0.30 -41.11 16 15 Si 0.91 41.61 29.69 68.60 2.04 43.64 16 16 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 C 0.13 5.69 3.33 46.31 0.15 5.85 16 20 C -0.16 -6.43 5.62 31.70 0.18 -6.25 16 21 C -0.11 -3.81 5.81 31.32 0.18 -3.63 16 22 C -0.11 -3.59 5.83 31.32 0.18 -3.41 16 23 C -0.14 -5.54 5.68 31.67 0.18 -5.36 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.16 4.88 8.00 -2.91 -0.02 4.86 16 30 H 0.28 13.00 8.32 -92.71 -0.77 12.23 16 31 H 0.08 3.60 7.95 -2.39 -0.02 3.58 16 32 H 0.09 3.83 2.42 -37.59 -0.09 3.74 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.19 6.84 -2.39 -0.02 2.18 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.07 2.32 6.97 -2.39 -0.02 2.31 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 1.92 4.96 -2.39 -0.01 1.91 16 Total: -1.00 -64.98 318.57 5.96 -59.02 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.97 Total: 13.86 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.05 Total: 9.13 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.29 Total: -83.14 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.80 Total: -42.51 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.04 Total: 43.64 kcal Total: -64.98 5.96 -59.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178968030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.348 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds