Wall clock time and date at job start Tue Mar 31 2020 01:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.47117 * 2 1 4 4 C 1.34230 * 116.99859 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00107 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00250 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47476 * 179.97438 * 6 4 3 8 8 N 1.46501 * 109.47310 * 179.97438 * 7 6 4 9 9 C 1.36932 * 120.00275 * 269.50145 * 8 7 6 10 10 H 1.08000 * 120.00118 * 325.91537 * 9 8 7 11 11 C 1.38808 * 119.99980 * 145.91783 * 9 8 7 12 12 N 1.31621 * 120.00172 * 336.75986 * 11 9 8 13 13 Si 1.86807 * 120.00079 * 156.76205 * 11 9 8 14 14 H 1.48505 * 109.46854 * 59.99521 * 13 11 9 15 15 H 1.48491 * 109.47143 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46750 * 300.00035 * 13 11 9 17 17 C 1.46502 * 119.99603 * 89.49764 * 8 7 6 18 18 C 1.50700 * 109.46811 * 90.00276 * 17 8 7 19 19 C 1.38671 * 120.41918 * 270.24812 * 18 17 8 20 20 C 1.38633 * 118.42408 * 180.24222 * 19 18 17 21 21 C 1.38225 * 119.15727 * 359.75739 * 20 19 18 22 22 N 1.31860 * 120.76808 * 359.97438 * 21 20 19 23 23 C 1.31890 * 121.72226 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47199 * 300.00340 * 1 2 3 26 26 H 1.09003 * 109.47082 * 59.99896 * 1 2 3 27 27 H 1.08999 * 109.47199 * 239.99660 * 2 1 3 28 28 H 1.08996 * 109.46684 * 120.00191 * 2 1 3 29 29 H 1.09001 * 109.47335 * 59.99716 * 6 4 3 30 30 H 1.09004 * 109.47117 * 299.99977 * 6 4 3 31 31 H 1.09001 * 109.46969 * 59.99616 * 7 6 4 32 32 H 1.08997 * 109.47258 * 299.99851 * 7 6 4 33 33 H 0.97001 * 119.99432 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47510 * 330.00217 * 17 8 7 35 35 H 1.08998 * 109.47166 * 209.99522 * 17 8 7 36 36 H 1.08005 * 120.79005 * 359.97375 * 19 18 17 37 37 H 1.07991 * 120.42202 * 179.72571 * 20 19 18 38 38 H 1.08006 * 119.61938 * 180.02562 * 21 20 19 39 39 H 1.07991 * 119.61759 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 6 5.4487 2.8572 0.0023 8 7 6.0087 4.2109 0.0023 9 6 6.2809 4.8393 -1.1835 10 1 6.6195 4.2655 -2.0334 11 6 6.1216 6.2139 -1.2931 12 7 5.3097 6.8496 -0.4751 13 14 7.0594 7.1615 -2.6016 14 1 6.6885 6.6490 -3.9452 15 1 6.7161 8.6033 -2.5102 16 1 8.5187 6.9851 -2.3901 17 6 6.2775 4.8924 1.2710 18 6 7.6825 4.5830 1.7196 19 6 7.9367 3.4811 2.5222 20 6 9.2439 3.2382 2.9148 21 6 10.2440 4.0935 2.4920 22 7 9.9662 5.1290 1.7245 23 6 8.7346 5.3906 1.3318 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.5846 3.4692 0.8911 30 1 3.5852 3.4697 -0.8888 31 1 5.7853 2.3251 -0.8874 32 1 5.7840 2.3250 0.8925 33 1 5.1982 7.8101 -0.5520 34 1 5.5708 4.5472 2.0257 35 1 6.1680 5.9684 1.1358 36 1 7.1347 2.8300 2.8376 37 1 9.4777 2.3918 3.5434 38 1 11.2651 3.9110 2.7931 39 1 8.5455 6.2484 0.7036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180593890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:35 Heat of formation + Delta-G solvation = -40.522444 kcal Electronic energy + Delta-G solvation = -21414.700691 eV Core-core repulsion = 18129.899254 eV Total energy + Delta-G solvation = -3284.801438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.11041 -39.45767 -36.65240 -35.87267 -32.30368 -32.18031 -31.58416 -31.09575 -29.27808 -25.93564 -24.92477 -23.09582 -22.82439 -21.96075 -20.82080 -19.80627 -17.43691 -16.94248 -16.47019 -16.34072 -15.85147 -15.62918 -14.85104 -14.50728 -14.32333 -13.83140 -13.58089 -13.21207 -13.08817 -12.80390 -12.61104 -12.48163 -12.39709 -11.87499 -11.76297 -11.50040 -11.32730 -11.06759 -10.85029 -10.57731 -10.43492 -10.33572 -10.10308 -10.08085 -9.97242 -9.19091 -8.90899 -8.60687 -8.28002 -6.85710 -5.97379 -3.50318 1.76863 1.90875 2.61107 2.98907 3.32031 3.38693 3.43640 4.34527 4.47668 4.89558 4.93444 5.05174 5.08840 5.16854 5.23675 5.33687 5.54025 5.56291 5.64591 5.70364 5.70971 5.78573 5.83629 5.89619 6.00699 6.13393 6.29932 6.42475 6.56236 6.61188 6.70633 6.71999 6.90551 7.02922 7.33941 7.51274 7.69149 8.12599 8.31730 8.60504 8.98692 9.60915 10.16326 11.03350 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.005381 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.093933 B = 5202.442088 C = 6817.279501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.520 6.520 6 C -0.130 4.130 7 C 0.162 3.838 8 N -0.570 5.570 9 C -0.263 4.263 10 H 0.065 0.935 11 C 0.015 3.985 12 N -0.882 5.882 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.172 3.828 18 C -0.119 4.119 19 C -0.082 4.082 20 C -0.181 4.181 21 C 0.070 3.930 22 N -0.493 5.493 23 C 0.114 3.886 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.259 0.741 34 H 0.038 0.962 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 -8.432 5.050 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.307 3.693 5 O -0.408 6.408 6 C -0.171 4.171 7 C 0.035 3.965 8 N -0.287 5.287 9 C -0.392 4.392 10 H 0.082 0.918 11 C -0.185 4.185 12 N -0.523 5.523 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.204 1.204 17 C 0.045 3.955 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.201 4.201 21 C -0.088 4.088 22 N -0.202 5.202 23 C -0.044 4.044 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.201 -7.999 4.762 9.844 hybrid contribution -0.268 -0.342 -0.408 0.597 sum -3.470 -8.341 4.353 10.028 Atomic orbital electron populations 1.21792 0.93054 1.02533 1.03489 1.22919 0.95101 0.81321 1.02190 1.86595 1.25795 1.31444 1.84293 1.24617 0.79754 0.93762 0.71129 1.90607 1.60346 1.43693 1.46176 1.22433 1.00403 0.88373 1.05857 1.20782 0.87610 0.87936 1.00201 1.43843 1.69415 1.13360 1.02131 1.19072 1.39110 0.90482 0.90530 0.91754 1.25074 0.97273 0.98049 0.98151 1.69946 1.33669 1.09066 1.39646 0.86512 0.80691 0.78860 0.81741 1.20591 1.21389 1.20404 1.20088 0.86495 1.02680 0.86187 1.22189 1.01239 0.94429 0.94532 1.21482 0.96340 0.96538 0.96568 1.21975 0.94308 1.01133 1.02685 1.22487 0.98949 0.91614 0.95706 1.67638 1.23013 1.18539 1.10973 1.22686 0.86972 0.98848 0.95849 0.90649 0.91573 0.91526 0.91589 0.91646 0.88545 0.87354 0.92699 0.93729 0.93083 0.94385 0.86959 0.85974 0.86039 0.84044 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.67 10.22 -39.26 -0.40 -6.07 16 4 C 0.46 8.06 7.96 36.01 0.29 8.34 16 5 O -0.52 -10.01 15.73 -18.75 -0.30 -10.30 16 6 C -0.13 -2.37 6.13 -27.88 -0.17 -2.54 16 7 C 0.16 3.26 4.96 -4.04 -0.02 3.24 16 8 N -0.57 -12.90 2.43 -174.61 -0.42 -13.33 16 9 C -0.26 -6.60 9.48 -15.06 -0.14 -6.75 16 10 H 0.06 1.66 7.93 -52.49 -0.42 1.25 16 11 C 0.02 0.39 4.94 -17.43 -0.09 0.30 16 12 N -0.88 -22.89 11.34 55.49 0.63 -22.26 16 13 Si 0.89 20.42 29.61 -169.99 -5.03 15.39 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 C 0.17 3.67 5.45 -5.19 -0.03 3.64 16 18 C -0.12 -2.37 5.48 -104.48 -0.57 -2.94 16 19 C -0.08 -1.43 9.86 -39.28 -0.39 -1.82 16 20 C -0.18 -2.82 10.11 -39.44 -0.40 -3.22 16 21 C 0.07 1.16 11.18 -17.54 -0.20 0.96 16 22 N -0.49 -9.72 10.36 -13.25 -0.14 -9.85 16 23 C 0.11 2.36 10.86 -17.55 -0.19 2.17 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 31 H 0.05 1.16 7.99 -51.93 -0.42 0.75 16 32 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.04 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.11 2.69 5.28 -51.93 -0.27 2.42 16 36 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.15 3.28 8.06 -52.49 -0.42 2.85 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -28.26 338.70 -7.58 -35.84 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.72 Total: 4.11 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.29 Total: 1.37 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.07 Total: -45.44 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.70 Total: -16.37 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.26 -7.58 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180593890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.684 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds