Wall clock time and date at job start Tue Mar 31 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45195 * 109.47344 * 2 1 4 4 C 1.34770 * 117.00508 * 179.97438 * 3 2 1 5 5 O 1.21522 * 119.99639 * 0.02562 * 4 3 2 6 6 C 1.47280 * 120.00190 * 179.97438 * 4 3 2 7 7 C 1.40040 * 120.61254 * 354.32276 * 6 4 3 8 8 C 1.38319 * 118.35850 * 180.02562 * 7 6 4 9 9 C 1.38395 * 119.51520 * 359.97438 * 8 7 6 10 10 N 1.31842 * 121.23305 * 0.02562 * 9 8 7 11 11 C 1.32427 * 121.78079 * 359.97438 * 10 9 8 12 12 N 1.38224 * 119.82798 * 180.02562 * 11 10 9 13 13 C 1.46493 * 120.00205 * 5.45473 * 12 11 10 14 14 C 1.53005 * 109.47367 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47388 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47115 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99823 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99970 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00352 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00022 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47458 * 89.99610 * 20 18 16 22 22 H 1.48494 * 109.47482 * 209.99653 * 20 18 16 23 23 H 1.48504 * 109.47183 * 329.99802 * 20 18 16 24 24 H 1.08994 * 109.47359 * 60.00500 * 1 2 3 25 25 H 1.09008 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47449 * 299.99619 * 1 2 3 27 27 H 1.08999 * 109.47568 * 239.99631 * 2 1 3 28 28 H 1.09000 * 109.47353 * 119.99962 * 2 1 3 29 29 H 1.07999 * 120.82500 * 359.97438 * 7 6 4 30 30 H 1.08001 * 120.23931 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.37844 * 179.71716 * 9 8 7 32 32 H 0.97007 * 119.99827 * 185.44872 * 12 11 10 33 33 H 1.09003 * 109.47340 * 299.99592 * 13 12 11 34 34 H 1.08995 * 109.47608 * 59.99687 * 13 12 11 35 35 H 1.08999 * 109.46610 * 299.99519 * 14 13 12 36 36 H 1.09004 * 109.47048 * 59.99438 * 14 13 12 37 37 H 1.09004 * 109.46957 * 299.99976 * 15 14 13 38 38 H 1.09001 * 109.46764 * 59.99881 * 15 14 13 39 39 H 0.96999 * 120.00450 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5455 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9130 2.9065 0.0000 7 6 3.0773 4.0238 -0.1203 8 6 3.6557 5.2803 -0.1159 9 6 5.0291 5.3983 0.0064 10 7 5.7994 4.3341 0.1186 11 6 5.2990 3.1080 0.1202 12 7 6.1440 2.0208 0.2408 13 6 7.5734 2.2276 0.4860 14 6 8.2768 0.8719 0.5766 15 6 9.7698 1.0879 0.8320 16 6 10.4624 -0.2475 0.9219 17 1 9.8946 -1.1590 0.8077 18 6 11.8211 -0.3054 1.1487 19 7 12.4257 -1.4707 1.2266 20 14 12.8033 1.2713 1.3455 21 1 12.8318 1.6613 2.7781 22 1 14.1911 1.0534 0.8642 23 1 12.1678 2.3528 0.5507 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0078 3.9074 -0.2150 30 1 3.0398 6.1628 -0.2073 31 1 5.4788 6.3802 0.0049 32 1 5.7905 1.1208 0.1630 33 1 8.0027 2.8052 -0.3327 34 1 7.7068 2.7698 1.4221 35 1 7.8477 0.2940 1.3951 36 1 8.1434 0.3301 -0.3598 37 1 10.1986 1.6657 0.0133 38 1 9.9034 1.6299 1.7683 39 1 13.3816 -1.5115 1.3866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184109074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:57 Heat of formation + Delta-G solvation = -57.307342 kcal Electronic energy + Delta-G solvation = -20793.613759 eV Core-core repulsion = 17508.084473 eV Total energy + Delta-G solvation = -3285.529285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.03222 -39.66982 -37.03857 -36.13977 -33.66327 -32.94231 -31.86999 -31.72555 -29.80572 -26.82882 -25.23941 -23.75303 -22.95816 -21.92398 -21.40809 -20.18090 -18.12045 -17.59336 -17.11499 -16.82595 -16.76403 -16.14543 -15.16771 -14.97014 -14.43605 -14.40050 -14.14611 -13.85709 -13.76578 -13.18438 -13.03683 -12.70198 -12.57945 -12.26587 -12.20446 -11.88647 -11.86405 -11.05587 -10.96194 -10.79226 -10.63751 -10.34468 -10.03064 -9.96884 -9.76134 -9.66976 -9.52080 -9.18468 -8.52293 -7.75843 -6.02607 -4.01020 0.54545 1.37436 2.39881 2.44541 3.33117 3.35959 3.40495 3.44810 3.79035 4.32319 4.47219 4.59203 4.64042 4.65946 4.69388 4.90651 4.99563 5.09470 5.28823 5.31228 5.45663 5.47557 5.60287 5.64541 5.72670 5.74232 5.96923 6.08670 6.17747 6.29890 6.51665 6.59043 6.83564 7.23034 7.28853 7.39061 7.41227 7.64416 7.80055 8.23917 8.55261 9.02082 9.59438 11.10830 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.003609 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.656935 B = 7757.368559 C = 9132.931492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.526 3.474 5 O -0.517 6.517 6 C -0.273 4.273 7 C 0.030 3.970 8 C -0.266 4.266 9 C 0.196 3.804 10 N -0.546 5.546 11 C 0.462 3.538 12 N -0.690 5.690 13 C 0.116 3.884 14 C -0.115 4.115 15 C -0.009 4.009 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.424 0.576 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.101 11.990 -3.117 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.373 3.627 5 O -0.407 6.407 6 C -0.283 4.283 7 C 0.004 3.996 8 C -0.290 4.290 9 C 0.033 3.967 10 N -0.264 5.264 11 C 0.221 3.779 12 N -0.327 5.327 13 C -0.007 4.007 14 C -0.153 4.153 15 C -0.047 4.047 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.178 0.822 32 H 0.274 0.726 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.617 11.542 -2.973 26.454 hybrid contribution -0.353 0.166 0.037 0.392 sum -23.970 11.708 -2.936 26.837 Atomic orbital electron populations 1.21807 0.92544 1.03076 1.03453 1.23065 0.95284 0.79894 1.03008 1.86520 1.23524 1.32537 1.84501 1.20797 0.80523 0.89231 0.72150 1.90552 1.59302 1.42612 1.48215 1.19211 0.93004 0.91341 1.24702 1.21575 0.99795 0.90977 0.87247 1.21731 0.96433 0.97936 1.12861 1.22802 0.90435 0.96656 0.86806 1.67525 1.39250 0.97199 1.22432 1.18389 0.85800 0.87887 0.85848 1.45973 1.08352 1.07496 1.70843 1.21722 0.78210 0.99566 1.01184 1.21712 0.97918 0.93859 1.01809 1.19487 0.90736 0.98053 0.96374 1.21121 0.93288 0.92255 1.49241 0.91014 1.25031 0.97791 0.96068 0.94640 1.69915 1.10225 1.24062 1.50102 0.86761 0.79264 0.84373 0.78814 1.20269 1.21403 1.18861 0.91490 0.90122 0.91469 0.90988 0.90953 0.83979 0.84549 0.82203 0.72633 0.91503 0.91793 0.92187 0.92121 0.96286 0.96764 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.55 6.20 37.16 0.23 0.78 16 3 O -0.35 -3.96 9.56 -40.68 -0.39 -4.35 16 4 C 0.53 7.21 7.88 34.41 0.27 7.48 16 5 O -0.52 -8.30 13.47 -19.28 -0.26 -8.56 16 6 C -0.27 -3.63 5.91 -104.66 -0.62 -4.25 16 7 C 0.03 0.30 9.73 -38.88 -0.38 -0.08 16 8 C -0.27 -2.33 10.09 -39.49 -0.40 -2.73 16 9 C 0.20 2.04 11.16 -17.49 -0.20 1.84 16 10 N -0.55 -7.89 9.55 -12.19 -0.12 -8.00 16 11 C 0.46 7.12 7.48 -155.20 -1.16 5.95 16 12 N -0.69 -11.66 5.57 -60.23 -0.34 -12.00 16 13 C 0.12 2.09 5.69 -4.04 -0.02 2.06 16 14 C -0.11 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 16 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.40 13.96 55.43 0.77 -27.62 16 20 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.14 1.07 7.71 -52.49 -0.40 0.66 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.42 7.37 4.98 -40.91 -0.20 7.17 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -33.48 332.33 -8.17 -41.65 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.61 Total: 2.45 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.57 Total: -5.99 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.32 Total: -47.63 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.65 Total: -12.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.48 -8.17 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184109074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.653 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds