Wall clock time and date at job start Tue Mar 31 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45195 * 109.47344 * 2 1 4 4 C 1.34770 * 117.00508 * 179.97438 * 3 2 1 5 5 O 1.21522 * 119.99639 * 0.02562 * 4 3 2 6 6 C 1.47280 * 120.00190 * 179.97438 * 4 3 2 7 7 C 1.40040 * 120.61254 * 354.32276 * 6 4 3 8 8 C 1.38319 * 118.35850 * 180.02562 * 7 6 4 9 9 C 1.38395 * 119.51520 * 359.97438 * 8 7 6 10 10 N 1.31842 * 121.23305 * 0.02562 * 9 8 7 11 11 C 1.32427 * 121.78079 * 359.97438 * 10 9 8 12 12 N 1.38224 * 119.82798 * 180.02562 * 11 10 9 13 13 C 1.46493 * 120.00205 * 5.45473 * 12 11 10 14 14 C 1.53005 * 109.47367 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47388 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47115 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99823 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99970 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00352 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00022 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47458 * 89.99610 * 20 18 16 22 22 H 1.48494 * 109.47482 * 209.99653 * 20 18 16 23 23 H 1.48504 * 109.47183 * 329.99802 * 20 18 16 24 24 H 1.08994 * 109.47359 * 60.00500 * 1 2 3 25 25 H 1.09008 * 109.47018 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47449 * 299.99619 * 1 2 3 27 27 H 1.08999 * 109.47568 * 239.99631 * 2 1 3 28 28 H 1.09000 * 109.47353 * 119.99962 * 2 1 3 29 29 H 1.07999 * 120.82500 * 359.97438 * 7 6 4 30 30 H 1.08001 * 120.23931 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.37844 * 179.71716 * 9 8 7 32 32 H 0.97007 * 119.99827 * 185.44872 * 12 11 10 33 33 H 1.09003 * 109.47340 * 299.99592 * 13 12 11 34 34 H 1.08995 * 109.47608 * 59.99687 * 13 12 11 35 35 H 1.08999 * 109.46610 * 299.99519 * 14 13 12 36 36 H 1.09004 * 109.47048 * 59.99438 * 14 13 12 37 37 H 1.09004 * 109.46957 * 299.99976 * 15 14 13 38 38 H 1.09001 * 109.46764 * 59.99881 * 15 14 13 39 39 H 0.96999 * 120.00450 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5455 0.0005 5 8 4.0903 0.5818 0.0005 6 6 3.9130 2.9065 0.0000 7 6 3.0773 4.0238 -0.1203 8 6 3.6557 5.2803 -0.1159 9 6 5.0291 5.3983 0.0064 10 7 5.7994 4.3341 0.1186 11 6 5.2990 3.1080 0.1202 12 7 6.1440 2.0208 0.2408 13 6 7.5734 2.2276 0.4860 14 6 8.2768 0.8719 0.5766 15 6 9.7698 1.0879 0.8320 16 6 10.4624 -0.2475 0.9219 17 1 9.8946 -1.1590 0.8077 18 6 11.8211 -0.3054 1.1487 19 7 12.4257 -1.4707 1.2266 20 14 12.8033 1.2713 1.3455 21 1 12.8318 1.6613 2.7781 22 1 14.1911 1.0534 0.8642 23 1 12.1678 2.3528 0.5507 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0078 3.9074 -0.2150 30 1 3.0398 6.1628 -0.2073 31 1 5.4788 6.3802 0.0049 32 1 5.7905 1.1208 0.1630 33 1 8.0027 2.8052 -0.3327 34 1 7.7068 2.7698 1.4221 35 1 7.8477 0.2940 1.3951 36 1 8.1434 0.3301 -0.3598 37 1 10.1986 1.6657 0.0133 38 1 9.9034 1.6299 1.7683 39 1 13.3816 -1.5115 1.3866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184109074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:55 Heat of formation + Delta-G solvation = -78.157495 kcal Electronic energy + Delta-G solvation = -20794.517889 eV Core-core repulsion = 17508.084473 eV Total energy + Delta-G solvation = -3286.433416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00893 -40.60927 -38.08637 -37.40877 -35.48397 -33.83284 -33.69126 -32.43819 -31.07153 -28.50347 -26.11385 -25.11094 -23.90724 -23.02365 -22.58627 -21.84327 -19.06895 -18.96618 -18.58049 -18.05781 -17.68083 -17.29045 -16.54282 -16.31738 -15.84264 -15.47528 -15.20529 -15.00976 -14.83759 -14.73432 -13.96146 -13.81422 -13.75750 -13.63604 -13.40947 -12.98449 -12.79287 -12.76205 -12.52904 -11.92613 -11.79241 -11.71867 -11.64320 -11.58781 -11.36946 -11.18899 -10.92131 -10.78616 -10.48248 -8.82496 -8.31491 -6.36903 -0.35700 0.50502 1.36296 1.38437 1.43583 1.51213 1.54819 2.22691 2.35767 2.89149 3.03619 3.45224 3.73712 3.81375 3.98938 4.04418 4.08971 4.12264 4.14674 4.29708 4.34905 4.48220 4.60887 4.84160 4.85511 4.88720 4.92239 4.94446 4.99482 5.09747 5.21164 5.34743 5.37675 5.50217 5.58199 5.62748 6.11678 6.25432 6.31515 6.64071 6.70574 7.18258 7.27799 8.85553 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.003609 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.656935 B = 7757.368559 C = 9132.931492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.347 6.347 4 C 0.523 3.477 5 O -0.550 6.550 6 C -0.288 4.288 7 C 0.032 3.968 8 C -0.242 4.242 9 C 0.187 3.813 10 N -0.575 5.575 11 C 0.438 3.562 12 N -0.708 5.708 13 C 0.137 3.863 14 C -0.104 4.104 15 C -0.004 4.004 16 C -0.538 4.538 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.952 5.952 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.243 1.243 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.195 0.805 32 H 0.419 0.581 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.977 15.698 -3.258 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.263 6.263 4 C 0.372 3.628 5 O -0.442 6.442 6 C -0.297 4.297 7 C 0.007 3.993 8 C -0.264 4.264 9 C 0.026 3.974 10 N -0.294 5.294 11 C 0.199 3.801 12 N -0.347 5.347 13 C 0.013 3.987 14 C -0.142 4.142 15 C -0.042 4.042 16 C -0.576 4.576 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.167 1.167 24 H 0.092 0.908 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.188 0.812 30 H 0.197 0.803 31 H 0.212 0.788 32 H 0.267 0.733 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.563 15.302 -3.122 29.956 hybrid contribution 0.057 -0.992 0.055 0.995 sum -25.506 14.311 -3.067 29.407 Atomic orbital electron populations 1.21816 0.89732 1.04455 1.04015 1.23345 0.97411 0.78881 1.02509 1.86517 1.22074 1.33772 1.83921 1.21052 0.81085 0.89267 0.71420 1.90533 1.60133 1.43712 1.49861 1.19366 0.92695 0.92160 1.25492 1.21971 1.00852 0.90394 0.86119 1.22216 0.96095 0.98802 1.09300 1.23516 0.91407 0.96885 0.85584 1.67516 1.40836 0.97609 1.23425 1.18593 0.86403 0.87931 0.87139 1.45799 1.07808 1.07991 1.73147 1.21309 0.79192 0.97064 1.01152 1.21498 0.96195 0.95664 1.00881 1.19408 0.92449 0.95365 0.97009 1.21467 0.93787 0.93075 1.49240 0.95365 1.26078 0.99063 1.00233 0.94047 1.70074 1.10877 1.26946 1.51404 0.85580 0.77379 0.79602 0.79635 1.18945 1.20821 1.16666 0.90783 0.88344 0.90961 0.91457 0.91674 0.81214 0.80251 0.78793 0.73337 0.91580 0.91748 0.93137 0.93100 0.95529 0.95682 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.92 6.20 71.98 0.45 1.36 16 3 O -0.35 -7.49 9.56 -56.81 -0.54 -8.03 16 4 C 0.52 14.43 7.88 70.20 0.55 14.98 16 5 O -0.55 -18.53 13.47 19.76 0.27 -18.26 16 6 C -0.29 -7.40 5.91 -19.89 -0.12 -7.52 16 7 C 0.03 0.54 9.73 22.73 0.22 0.76 16 8 C -0.24 -3.15 10.09 22.33 0.23 -2.92 16 9 C 0.19 3.25 11.16 84.73 0.95 4.20 16 10 N -0.57 -15.76 9.55 -192.49 -1.84 -17.60 16 11 C 0.44 13.38 7.48 133.67 1.00 14.38 16 12 N -0.71 -24.64 5.57 -344.46 -1.92 -26.56 16 13 C 0.14 4.96 5.69 86.38 0.49 5.45 16 14 C -0.10 -4.46 5.27 30.60 0.16 -4.30 16 15 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 16 C -0.54 -32.49 9.66 25.60 0.25 -32.25 16 17 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 18 C 0.00 0.14 5.47 84.65 0.46 0.61 16 19 N -0.95 -61.57 13.96 21.44 0.30 -61.27 16 20 Si 0.96 45.32 27.47 68.60 1.88 47.20 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.17 1.86 7.71 -2.91 -0.02 1.84 16 30 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 31 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.42 15.35 4.98 -94.22 -0.47 14.88 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 38 H 0.02 1.17 7.57 -2.39 -0.02 1.15 16 39 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -76.10 332.33 4.17 -71.93 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.52 Total: 18.62 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.50 Total: -6.03 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.46 Total: -105.44 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.28 Total: -26.29 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -76.10 4.17 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184109074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.224 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds