Wall clock time and date at job start Tue Mar 31 2020 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99844 * 2 1 4 4 C 1.50699 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.38280 * 119.93118 * 269.72619 * 4 3 2 6 6 C 1.38115 * 120.07000 * 179.76561 * 5 4 3 7 7 C 1.38858 * 119.92961 * 0.50832 * 6 5 4 8 8 N 1.39948 * 120.07410 * 179.72285 * 7 6 5 9 9 C 1.34775 * 120.00229 * 144.92681 * 8 7 6 10 10 O 1.21589 * 120.00180 * 4.59522 * 9 8 7 11 11 N 1.34776 * 119.99967 * 184.58764 * 9 8 7 12 12 C 1.46501 * 120.00038 * 0.02562 * 11 9 8 13 13 C 1.46498 * 120.00332 * 180.02562 * 11 9 8 14 14 C 1.50696 * 109.47180 * 90.00253 * 13 11 9 15 15 H 1.08001 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.37879 * 120.00209 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99716 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47355 * 89.99772 * 18 16 14 20 20 H 1.48500 * 109.47144 * 209.99620 * 18 16 14 21 21 H 1.48498 * 109.47408 * 329.99751 * 18 16 14 22 22 C 1.38868 * 119.86310 * 359.74520 * 7 6 5 23 23 C 1.38120 * 119.92615 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47374 * 60.00198 * 1 2 3 25 25 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47469 * 300.00022 * 1 2 3 27 27 H 1.09000 * 109.47160 * 300.00079 * 3 2 1 28 28 H 1.08999 * 109.46660 * 59.99863 * 3 2 1 29 29 H 1.08008 * 119.96190 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.03641 * 180.23009 * 6 5 4 31 31 H 0.97007 * 119.99757 * 324.93746 * 8 7 6 32 32 H 1.09000 * 109.47399 * 89.99218 * 12 11 9 33 33 H 1.09003 * 109.47256 * 209.99733 * 12 11 9 34 34 H 1.09001 * 109.47269 * 329.99595 * 12 11 9 35 35 H 1.08994 * 109.47661 * 210.00925 * 13 11 9 36 36 H 1.09009 * 109.46560 * 330.00483 * 13 11 9 37 37 H 0.97000 * 119.99696 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.04245 * 179.97438 * 22 7 6 39 39 H 1.08004 * 119.96525 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2002 1.1381 1.1993 6 6 5.5767 1.0242 1.2032 7 6 6.2708 0.9691 0.0018 8 7 7.6659 0.8595 0.0023 9 6 8.2856 0.1376 -0.9523 10 8 7.6409 -0.3490 -1.8612 11 7 9.6199 -0.0448 -0.8996 12 6 10.3967 0.5411 0.1956 13 6 10.2936 -0.8290 -1.9376 14 6 10.7163 0.0824 -3.0608 15 1 10.5047 1.1401 -3.0067 16 6 11.3733 -0.4340 -4.1576 17 7 11.6314 -1.7219 -4.2232 18 14 11.8978 0.6959 -5.5495 19 1 13.2659 1.2082 -5.2824 20 1 11.8929 -0.0589 -6.8283 21 1 10.9519 1.8367 -5.6443 22 6 5.5776 1.0233 -1.2003 23 6 4.2008 1.1324 -1.1975 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 3.6601 1.1850 2.1334 30 1 6.1130 0.9826 2.1398 31 1 8.1870 1.3031 0.6899 32 1 10.4506 -0.1672 1.0223 33 1 11.4036 0.7687 -0.1542 34 1 9.9137 1.4580 0.5337 35 1 11.1724 -1.3145 -1.5133 36 1 9.6101 -1.5863 -2.3218 37 1 12.0939 -2.0851 -4.9946 38 1 6.1146 0.9811 -2.1363 39 1 3.6611 1.1751 -2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192583260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:00 Heat of formation + Delta-G solvation = -35.728140 kcal Electronic energy + Delta-G solvation = -20967.960051 eV Core-core repulsion = 17683.366510 eV Total energy + Delta-G solvation = -3284.593541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25387 -38.82916 -37.54748 -35.04214 -34.40910 -32.58408 -30.79828 -30.64264 -27.87259 -27.02416 -25.91450 -24.96633 -23.01757 -22.69009 -21.12332 -19.42629 -17.89724 -16.88821 -16.56907 -16.50235 -16.13287 -15.97900 -15.08252 -14.86032 -14.42601 -14.23549 -14.02821 -13.34689 -13.24075 -13.18995 -12.88882 -12.39111 -12.37107 -12.19173 -11.90656 -11.70637 -11.31208 -11.17603 -11.02206 -10.91299 -10.57597 -10.16376 -9.96775 -9.86175 -9.65084 -9.23982 -8.72201 -8.43604 -7.96191 -7.57774 -6.04194 -4.09063 1.37675 1.59539 3.18468 3.30227 3.37188 3.42182 3.52642 3.89309 4.21277 4.39424 4.53554 4.81798 4.86279 5.09240 5.11112 5.15300 5.23815 5.26765 5.29855 5.45171 5.47239 5.55089 5.76428 5.82952 5.89910 6.08652 6.17286 6.41579 6.51045 6.71208 6.82215 6.85271 6.98611 7.30926 7.34814 7.49360 7.66104 7.93561 8.22628 8.56324 8.91659 9.22620 9.56315 11.03743 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.003485 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.454447 B = 8031.546388 C = 8626.256118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.109 3.891 4 C -0.125 4.125 5 C -0.081 4.081 6 C -0.160 4.160 7 C 0.188 3.812 8 N -0.697 5.697 9 C 0.697 3.303 10 O -0.566 6.566 11 N -0.612 5.612 12 C 0.084 3.916 13 C 0.259 3.741 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.123 4.123 23 C -0.078 4.078 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.402 0.598 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.353 7.864 13.060 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 C -0.126 4.126 5 C -0.099 4.099 6 C -0.181 4.181 7 C 0.091 3.909 8 N -0.347 5.347 9 C 0.399 3.601 10 O -0.442 6.442 11 N -0.347 5.347 12 C -0.060 4.060 13 C 0.140 3.860 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.144 4.144 23 C -0.097 4.097 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.238 0.762 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.476 7.134 12.235 20.978 hybrid contribution 0.522 1.013 -0.390 1.205 sum -14.954 8.147 11.845 20.743 Atomic orbital electron populations 1.22741 0.81396 1.02737 0.99770 1.88027 1.19234 1.27776 1.95331 1.21288 0.90227 0.84811 1.00425 1.19428 0.93576 1.05905 0.93691 1.20676 0.93255 0.98812 0.97195 1.20811 0.94244 1.06591 0.96443 1.17640 0.82415 0.97030 0.93812 1.43015 1.04842 1.54242 1.32603 1.15934 0.82687 0.79560 0.81950 1.90892 1.64203 1.54067 1.35069 1.47511 1.04066 1.55166 1.28003 1.21595 0.97991 0.96498 0.89963 1.19263 0.92031 0.90777 0.83949 1.21447 1.36995 0.94682 1.03485 0.92484 1.24934 0.95877 0.95151 0.98149 1.69932 1.41429 1.11536 1.30466 0.86486 0.78693 0.80645 0.81524 1.20674 1.21067 1.19908 1.21471 0.94035 1.00099 0.98780 1.20928 0.93751 0.97740 0.97282 0.94138 0.89676 0.94236 0.92654 0.92792 0.86080 0.85891 0.76163 0.93608 0.90237 0.93188 0.94731 0.93615 0.92681 0.83541 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.69 10.69 -35.23 -0.38 -5.07 16 3 C 0.11 1.15 6.06 36.01 0.22 1.37 16 4 C -0.12 -1.63 5.51 -104.59 -0.58 -2.20 16 5 C -0.08 -0.98 9.69 -39.61 -0.38 -1.37 16 6 C -0.16 -2.09 9.97 -39.40 -0.39 -2.48 16 7 C 0.19 3.03 6.30 -83.69 -0.53 2.50 16 8 N -0.70 -11.55 5.22 -14.23 -0.07 -11.63 16 9 C 0.70 15.08 8.12 -86.92 -0.71 14.38 16 10 O -0.57 -14.64 13.36 5.29 0.07 -14.57 16 11 N -0.61 -13.11 2.86 -188.74 -0.54 -13.65 16 12 C 0.08 1.30 10.24 59.85 0.61 1.91 16 13 C 0.26 6.81 5.16 -5.20 -0.03 6.78 16 14 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.12 -2.14 8.70 -39.39 -0.34 -2.48 16 23 C -0.08 -1.15 9.69 -39.61 -0.38 -1.53 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.40 5.19 6.52 -40.82 -0.27 4.93 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 35 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.05 1.36 7.42 -51.92 -0.39 0.97 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.15 2.95 6.22 -52.49 -0.33 2.62 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -34.46 333.19 -7.49 -41.95 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.49 Total: 2.38 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.82 Total: 4.60 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.12 Total: -51.20 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.31 Total: -19.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.46 -7.49 -41.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192583260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.220 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds