Wall clock time and date at job start Tue Mar 31 2020 01:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99844 * 2 1 4 4 C 1.50699 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.38280 * 119.93118 * 269.72619 * 4 3 2 6 6 C 1.38115 * 120.07000 * 179.76561 * 5 4 3 7 7 C 1.38858 * 119.92961 * 0.50832 * 6 5 4 8 8 N 1.39948 * 120.07410 * 179.72285 * 7 6 5 9 9 C 1.34775 * 120.00229 * 144.92681 * 8 7 6 10 10 O 1.21589 * 120.00180 * 4.59522 * 9 8 7 11 11 N 1.34776 * 119.99967 * 184.58764 * 9 8 7 12 12 C 1.46501 * 120.00038 * 0.02562 * 11 9 8 13 13 C 1.46498 * 120.00332 * 180.02562 * 11 9 8 14 14 C 1.50696 * 109.47180 * 90.00253 * 13 11 9 15 15 H 1.08001 * 120.00183 * 0.02562 * 14 13 11 16 16 C 1.37879 * 120.00209 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99716 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47355 * 89.99772 * 18 16 14 20 20 H 1.48500 * 109.47144 * 209.99620 * 18 16 14 21 21 H 1.48498 * 109.47408 * 329.99751 * 18 16 14 22 22 C 1.38868 * 119.86310 * 359.74520 * 7 6 5 23 23 C 1.38120 * 119.92615 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47374 * 60.00198 * 1 2 3 25 25 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47469 * 300.00022 * 1 2 3 27 27 H 1.09000 * 109.47160 * 300.00079 * 3 2 1 28 28 H 1.08999 * 109.46660 * 59.99863 * 3 2 1 29 29 H 1.08008 * 119.96190 * 0.02562 * 5 4 3 30 30 H 1.08001 * 120.03641 * 180.23009 * 6 5 4 31 31 H 0.97007 * 119.99757 * 324.93746 * 8 7 6 32 32 H 1.09000 * 109.47399 * 89.99218 * 12 11 9 33 33 H 1.09003 * 109.47256 * 209.99733 * 12 11 9 34 34 H 1.09001 * 109.47269 * 329.99595 * 12 11 9 35 35 H 1.08994 * 109.47661 * 210.00925 * 13 11 9 36 36 H 1.09009 * 109.46560 * 330.00483 * 13 11 9 37 37 H 0.97000 * 119.99696 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.04245 * 179.97438 * 22 7 6 39 39 H 1.08004 * 119.96525 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2002 1.1381 1.1993 6 6 5.5767 1.0242 1.2032 7 6 6.2708 0.9691 0.0018 8 7 7.6659 0.8595 0.0023 9 6 8.2856 0.1376 -0.9523 10 8 7.6409 -0.3490 -1.8612 11 7 9.6199 -0.0448 -0.8996 12 6 10.3967 0.5411 0.1956 13 6 10.2936 -0.8290 -1.9376 14 6 10.7163 0.0824 -3.0608 15 1 10.5047 1.1401 -3.0067 16 6 11.3733 -0.4340 -4.1576 17 7 11.6314 -1.7219 -4.2232 18 14 11.8978 0.6959 -5.5495 19 1 13.2659 1.2082 -5.2824 20 1 11.8929 -0.0589 -6.8283 21 1 10.9519 1.8367 -5.6443 22 6 5.5776 1.0233 -1.2003 23 6 4.2008 1.1324 -1.1975 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 3.6601 1.1850 2.1334 30 1 6.1130 0.9826 2.1398 31 1 8.1870 1.3031 0.6899 32 1 10.4506 -0.1672 1.0223 33 1 11.4036 0.7687 -0.1542 34 1 9.9137 1.4580 0.5337 35 1 11.1724 -1.3145 -1.5133 36 1 9.6101 -1.5863 -2.3218 37 1 12.0939 -2.0851 -4.9946 38 1 6.1146 0.9811 -2.1363 39 1 3.6611 1.1751 -2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192583260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:59 Heat of formation + Delta-G solvation = -59.216065 kcal Electronic energy + Delta-G solvation = -20968.978564 eV Core-core repulsion = 17683.366510 eV Total energy + Delta-G solvation = -3285.612054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68967 -40.03030 -38.48893 -36.73060 -35.89754 -34.65538 -31.89748 -31.81059 -29.71205 -27.94399 -27.29929 -26.10131 -24.78131 -23.89165 -22.33101 -20.95318 -19.34646 -18.68920 -18.29972 -17.33452 -17.14994 -16.91105 -16.77742 -16.47537 -15.89357 -15.42568 -15.24829 -14.88296 -14.54525 -14.31472 -14.26490 -13.93761 -13.61551 -13.48811 -13.16398 -13.10186 -12.83868 -12.57421 -12.46839 -12.31796 -12.18007 -12.00475 -11.74744 -11.34141 -10.90547 -10.64319 -10.59205 -9.84446 -9.57485 -8.97936 -8.22329 -6.37527 0.25231 0.49219 1.35894 1.39242 1.49274 1.71443 2.12680 2.38324 2.70974 3.03735 3.08233 3.28148 3.90880 3.98424 4.11789 4.27236 4.29353 4.42127 4.50744 4.57779 4.60409 4.63749 4.65935 4.78746 4.83125 4.90143 4.95703 5.09916 5.19544 5.31033 5.40985 5.53282 5.60338 5.66637 5.78485 6.04921 6.07628 6.10917 6.28210 6.71062 7.03584 7.29583 7.60976 8.84244 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.003485 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.454447 B = 8031.546388 C = 8626.256118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.108 3.892 4 C -0.122 4.122 5 C -0.075 4.075 6 C -0.145 4.145 7 C 0.158 3.842 8 N -0.676 5.676 9 C 0.691 3.309 10 O -0.621 6.621 11 N -0.620 5.620 12 C 0.078 3.922 13 C 0.275 3.725 14 C -0.543 4.543 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.275 1.275 22 C -0.153 4.153 23 C -0.089 4.089 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.421 0.579 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.031 0.969 36 H -0.002 1.002 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.452 9.692 15.396 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.094 4.094 6 C -0.166 4.166 7 C 0.063 3.937 8 N -0.327 5.327 9 C 0.393 3.607 10 O -0.501 6.501 11 N -0.355 5.355 12 C -0.064 4.064 13 C 0.153 3.847 14 C -0.582 4.582 15 H 0.070 0.930 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.200 1.200 22 C -0.174 4.174 23 C -0.108 4.108 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.579 9.010 14.650 23.888 hybrid contribution 0.722 0.434 -1.043 1.341 sum -15.857 9.444 13.606 22.929 Atomic orbital electron populations 1.22931 0.79410 1.03633 1.01150 1.87964 1.21486 1.28628 1.95641 1.21381 0.88327 0.84742 1.02360 1.19809 0.95333 1.03999 0.93197 1.21156 0.93027 0.96859 0.98337 1.21143 0.94745 1.04439 0.96232 1.17892 0.82008 0.99131 0.94693 1.42610 1.05308 1.53169 1.31607 1.16144 0.82584 0.79709 0.82275 1.90859 1.65442 1.56269 1.37488 1.47376 1.04537 1.55088 1.28475 1.21913 0.97336 0.98527 0.88666 1.18713 0.90763 0.90165 0.85015 1.21699 1.37183 0.94622 1.04648 0.93033 1.25852 0.95777 0.96726 1.00767 1.70049 1.42024 1.13284 1.31424 0.85402 0.78924 0.78367 0.78016 1.18624 1.20613 1.20004 1.21284 0.95311 1.02827 0.97941 1.21036 0.92785 0.98165 0.98791 0.93228 0.89157 0.92333 0.91681 0.89932 0.82312 0.82482 0.73907 0.90855 0.90687 0.89526 0.95103 0.98372 0.92343 0.87756 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.26 10.69 -148.98 -1.59 -10.85 16 3 C 0.11 1.97 6.06 71.24 0.43 2.41 16 4 C -0.12 -2.94 5.51 -19.84 -0.11 -3.05 16 5 C -0.08 -1.57 9.69 22.25 0.22 -1.36 16 6 C -0.15 -3.36 9.97 22.39 0.22 -3.14 16 7 C 0.16 5.06 6.30 38.14 0.24 5.30 16 8 N -0.68 -22.14 5.22 -317.18 -1.65 -23.79 16 9 C 0.69 30.98 8.12 179.06 1.45 32.43 16 10 O -0.62 -34.37 13.36 -3.99 -0.05 -34.43 16 11 N -0.62 -27.15 2.86 -869.31 -2.48 -29.64 16 12 C 0.08 2.29 10.24 127.77 1.31 3.59 16 13 C 0.28 15.16 5.16 85.63 0.44 15.60 16 14 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 15 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 16 C 0.01 0.46 5.46 84.66 0.46 0.92 16 17 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 18 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C -0.15 -5.57 8.70 22.39 0.19 -5.38 16 23 C -0.09 -2.66 9.69 22.25 0.22 -2.44 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 28 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 29 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.42 9.97 6.52 -92.70 -0.60 9.36 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 34 H 0.09 1.88 6.30 -2.39 -0.02 1.87 16 35 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 36 H 0.00 -0.12 7.42 -2.38 -0.02 -0.14 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.10 4.66 6.22 -2.91 -0.02 4.64 16 39 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -80.09 333.19 3.54 -76.54 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.45 Total: 16.21 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 6.57 Total: 14.88 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -3.85 Total: -109.95 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.65 Total: -45.27 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -80.09 3.54 -76.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192583260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.328 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds