Wall clock time and date at job start Tue Mar 31 2020 00:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47412 * 2 1 4 4 C 1.36799 * 119.99856 * 92.82024 * 3 2 1 5 5 H 1.07998 * 119.99475 * 221.04808 * 4 3 2 6 6 C 1.39098 * 120.00057 * 41.04366 * 4 3 2 7 7 N 1.31326 * 120.00022 * 28.05234 * 6 4 3 8 8 Si 1.86798 * 120.00038 * 208.04217 * 6 4 3 9 9 H 1.48507 * 109.47002 * 90.00372 * 8 6 4 10 10 H 1.48499 * 109.47645 * 210.00330 * 8 6 4 11 11 H 1.48497 * 109.47358 * 330.00704 * 8 6 4 12 12 C 1.34778 * 119.99953 * 272.81608 * 3 2 1 13 13 O 1.21554 * 119.99656 * 188.02604 * 12 3 2 14 14 C 1.47999 * 120.00008 * 8.02590 * 12 3 2 15 15 C 1.40060 * 120.90180 * 7.73269 * 14 12 3 16 16 C 1.37935 * 119.12610 * 179.77276 * 15 14 12 17 17 N 1.31925 * 120.98374 * 0.51245 * 16 15 14 18 18 C 1.32198 * 121.99166 * 359.74092 * 17 16 15 19 19 O 1.35685 * 119.61965 * 179.97438 * 18 17 16 20 20 C 1.42903 * 117.00301 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.47182 * 149.99907 * 20 19 18 22 22 C 1.53001 * 109.46869 * 269.99963 * 20 19 18 23 23 C 1.38850 * 120.76266 * 359.97438 * 18 17 16 24 24 H 1.09007 * 109.46726 * 309.05898 * 1 2 3 25 25 H 1.09004 * 109.46885 * 69.04973 * 1 2 3 26 26 H 1.08998 * 109.47011 * 189.05679 * 1 2 3 27 27 H 1.09003 * 109.47294 * 120.00021 * 2 1 3 28 28 H 1.09003 * 109.46922 * 239.99794 * 2 1 3 29 29 H 0.97004 * 119.99647 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.43647 * 359.97438 * 15 14 12 31 31 H 1.08006 * 119.50628 * 180.25247 * 16 15 14 32 32 H 1.08997 * 109.47026 * 29.99896 * 20 19 18 33 33 H 1.08997 * 109.47149 * 60.00065 * 21 20 19 34 34 H 1.08996 * 109.46643 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46845 * 299.99892 * 21 20 19 36 36 H 1.08997 * 109.47241 * 299.99800 * 22 20 19 37 37 H 1.08995 * 109.47018 * 59.99648 * 22 20 19 38 38 H 1.08998 * 109.46809 * 180.02562 * 22 20 19 39 39 H 1.07988 * 120.53558 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3014 2.0066 1.1833 5 1 2.0220 3.0397 1.3283 6 6 2.9488 1.3119 2.1997 7 7 3.7576 0.3200 1.9052 8 14 2.6682 1.7901 3.9835 9 1 1.5204 1.0206 4.5275 10 1 3.8873 1.4865 4.7751 11 1 2.3735 3.2431 4.0660 12 6 2.1890 2.0357 -1.1658 13 8 2.7294 3.1244 -1.1781 14 6 1.7183 1.4287 -2.4309 15 6 0.9531 0.2556 -2.4249 16 6 0.5298 -0.2759 -3.6252 17 7 0.8437 0.2984 -4.7707 18 6 1.5677 1.4031 -4.8251 19 8 1.8628 1.9529 -6.0299 20 6 1.3587 1.2855 -7.1886 21 6 1.1066 2.3091 -8.2976 22 6 2.3822 0.2547 -7.6691 23 6 2.0297 2.0073 -3.6634 24 1 -0.3633 0.6476 0.7980 25 1 -0.3633 0.3675 -0.9598 26 1 -0.3633 -1.0148 0.1618 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 4.2094 -0.1641 2.6140 30 1 0.6952 -0.2246 -1.4926 31 1 -0.0641 -1.1781 -3.6276 32 1 0.4247 0.7816 -6.9401 33 1 2.0406 2.8130 -8.5461 34 1 0.7217 1.8000 -9.1811 35 1 0.3775 3.0434 -7.9552 36 1 3.3162 0.7586 -7.9176 37 1 2.5618 -0.4744 -6.8790 38 1 1.9979 -0.2541 -8.5531 39 1 2.6212 2.9095 -3.7121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268434042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:18 Heat of formation + Delta-G solvation = 22.029109 kcal Electronic energy + Delta-G solvation = -21883.712299 eV Core-core repulsion = 18601.623301 eV Total energy + Delta-G solvation = -3282.088999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.58770 -39.06201 -37.41810 -35.50439 -33.34699 -32.91057 -31.52137 -30.47736 -29.06435 -27.32005 -25.78414 -23.78694 -22.89220 -22.53112 -21.35380 -19.61498 -17.93915 -17.04800 -16.67638 -16.22932 -15.50022 -15.15882 -15.12421 -14.43867 -14.08274 -13.94518 -13.75158 -13.61549 -13.19604 -12.91171 -12.56011 -12.37099 -12.31734 -12.00476 -11.94869 -11.71894 -11.25534 -11.18765 -10.99797 -10.81351 -10.60705 -10.46147 -10.39094 -10.21317 -9.35818 -9.24559 -8.98267 -8.51613 -8.07051 -7.62000 -6.52720 -4.08930 1.31433 1.55714 3.09870 3.16702 3.20246 3.24881 3.77114 4.03040 4.42805 4.53385 4.69675 4.84611 4.87730 4.95679 5.20068 5.22304 5.35216 5.44620 5.46863 5.56397 5.65875 5.71199 5.77607 5.86675 5.96374 6.03711 6.05562 6.12350 6.15563 6.19213 6.35497 6.62510 6.70678 6.77362 6.95065 7.43535 7.55592 8.13944 8.15597 8.36029 9.05138 9.19786 9.87272 10.51333 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.004151 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.212891 B = 6743.475886 C = 7077.933288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.081 3.919 3 N -0.416 5.416 4 C -0.318 4.318 5 H 0.094 0.906 6 C 0.047 3.953 7 N -0.845 5.845 8 Si 0.915 3.085 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.483 3.517 13 O -0.570 6.570 14 C -0.025 4.025 15 C -0.261 4.261 16 C 0.121 3.879 17 N -0.544 5.544 18 C 0.308 3.692 19 O -0.304 6.304 20 C 0.082 3.918 21 C -0.150 4.150 22 C -0.167 4.167 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.272 0.728 30 H 0.214 0.786 31 H 0.156 0.844 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -4.909 -11.743 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.042 4.042 3 N -0.134 5.134 4 C -0.446 4.446 5 H 0.112 0.888 6 C -0.161 4.161 7 N -0.479 5.479 8 Si 0.741 3.259 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.272 3.728 13 O -0.453 6.453 14 C -0.036 4.036 15 C -0.280 4.280 16 C -0.034 4.034 17 N -0.269 5.269 18 C 0.130 3.870 19 O -0.212 6.212 20 C 0.025 3.975 21 C -0.207 4.207 22 C -0.225 4.225 23 C -0.170 4.170 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.173 0.827 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.950 -4.636 -12.471 15.011 hybrid contribution 0.214 0.203 1.449 1.479 sum -6.737 -4.433 -11.022 13.657 Atomic orbital electron populations 1.22767 0.97646 1.02164 1.03204 1.22074 0.91992 0.86250 1.03918 1.43350 1.54239 1.11378 1.04392 1.19431 1.37778 0.98956 0.88411 0.88807 1.25487 0.93032 0.96636 1.00946 1.70066 1.21705 1.21997 1.34150 0.86119 0.78029 0.79718 0.82081 1.19997 1.20871 1.19027 1.18174 0.83946 0.87972 0.82675 1.90617 1.46247 1.22604 1.85857 1.20627 0.94189 0.94155 0.94630 1.25010 1.00730 0.98333 1.03904 1.22308 0.96426 0.98055 0.86568 1.66983 1.17026 1.11012 1.31846 1.19552 0.92152 0.89621 0.85661 1.86295 1.72176 1.50902 1.11840 1.22249 0.98286 0.93478 0.83477 1.21898 1.02651 0.99165 0.97004 1.22204 0.99543 0.99113 1.01634 1.21099 1.04047 1.02833 0.89039 0.91095 0.90596 0.91966 0.88566 0.90561 0.91840 0.77095 0.82700 0.89438 0.91735 0.90803 0.91907 0.92143 0.91936 0.91462 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 8.98 37.16 0.33 -2.86 16 2 C 0.08 1.64 5.20 -4.04 -0.02 1.62 16 3 N -0.42 -10.33 2.49 -126.73 -0.32 -10.64 16 4 C -0.32 -8.56 8.73 -15.02 -0.13 -8.69 16 5 H 0.09 2.64 7.96 -52.49 -0.42 2.22 16 6 C 0.05 1.21 4.70 -17.45 -0.08 1.13 16 7 N -0.84 -22.19 12.23 55.50 0.68 -21.51 16 8 Si 0.91 19.57 29.64 -169.99 -5.04 14.53 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 12 C 0.48 12.27 7.57 -12.26 -0.09 12.18 16 13 O -0.57 -16.54 16.44 5.32 0.09 -16.45 16 14 C -0.02 -0.52 5.80 -104.68 -0.61 -1.13 16 15 C -0.26 -4.45 6.25 -39.01 -0.24 -4.70 16 16 C 0.12 1.82 11.16 -17.62 -0.20 1.62 16 17 N -0.54 -8.93 8.61 -13.39 -0.12 -9.05 16 18 C 0.31 5.51 7.45 -17.17 -0.13 5.39 16 19 O -0.30 -4.96 9.76 -18.76 -0.18 -5.14 16 20 C 0.08 1.03 3.11 -26.73 -0.08 0.95 16 21 C -0.15 -1.47 9.56 37.16 0.36 -1.12 16 22 C -0.17 -1.89 9.53 37.16 0.35 -1.53 16 23 C -0.15 -2.97 9.61 -38.82 -0.37 -3.35 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.15 5.16 -51.93 -0.27 0.88 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.10 6.09 -51.93 -0.32 1.79 16 28 H 0.08 1.44 5.22 -51.93 -0.27 1.17 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.21 3.34 1.52 -99.83 -0.15 3.19 16 31 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.09 1.14 6.98 -51.93 -0.36 0.78 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.14 2.98 7.76 -52.49 -0.41 2.58 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -31.35 320.32 -6.11 -37.45 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.13 Total: 6.47 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.92 Total: -0.49 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.25 Total: -41.20 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.10 Total: -21.60 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.04 Total: 14.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.35 -6.11 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268434042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.484 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds