Wall clock time and date at job start Tue Mar 31 2020 00:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47412 * 2 1 4 4 C 1.36799 * 119.99856 * 92.82024 * 3 2 1 5 5 H 1.07998 * 119.99475 * 221.04808 * 4 3 2 6 6 C 1.39098 * 120.00057 * 41.04366 * 4 3 2 7 7 N 1.31326 * 120.00022 * 28.05234 * 6 4 3 8 8 Si 1.86798 * 120.00038 * 208.04217 * 6 4 3 9 9 H 1.48507 * 109.47002 * 90.00372 * 8 6 4 10 10 H 1.48499 * 109.47645 * 210.00330 * 8 6 4 11 11 H 1.48497 * 109.47358 * 330.00704 * 8 6 4 12 12 C 1.34778 * 119.99953 * 272.81608 * 3 2 1 13 13 O 1.21554 * 119.99656 * 188.02604 * 12 3 2 14 14 C 1.47999 * 120.00008 * 8.02590 * 12 3 2 15 15 C 1.40060 * 120.90180 * 7.73269 * 14 12 3 16 16 C 1.37935 * 119.12610 * 179.77276 * 15 14 12 17 17 N 1.31925 * 120.98374 * 0.51245 * 16 15 14 18 18 C 1.32198 * 121.99166 * 359.74092 * 17 16 15 19 19 O 1.35685 * 119.61965 * 179.97438 * 18 17 16 20 20 C 1.42903 * 117.00301 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.47182 * 149.99907 * 20 19 18 22 22 C 1.53001 * 109.46869 * 269.99963 * 20 19 18 23 23 C 1.38850 * 120.76266 * 359.97438 * 18 17 16 24 24 H 1.09007 * 109.46726 * 309.05898 * 1 2 3 25 25 H 1.09004 * 109.46885 * 69.04973 * 1 2 3 26 26 H 1.08998 * 109.47011 * 189.05679 * 1 2 3 27 27 H 1.09003 * 109.47294 * 120.00021 * 2 1 3 28 28 H 1.09003 * 109.46922 * 239.99794 * 2 1 3 29 29 H 0.97004 * 119.99647 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.43647 * 359.97438 * 15 14 12 31 31 H 1.08006 * 119.50628 * 180.25247 * 16 15 14 32 32 H 1.08997 * 109.47026 * 29.99896 * 20 19 18 33 33 H 1.08997 * 109.47149 * 60.00065 * 21 20 19 34 34 H 1.08996 * 109.46643 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46845 * 299.99892 * 21 20 19 36 36 H 1.08997 * 109.47241 * 299.99800 * 22 20 19 37 37 H 1.08995 * 109.47018 * 59.99648 * 22 20 19 38 38 H 1.08998 * 109.46809 * 180.02562 * 22 20 19 39 39 H 1.07988 * 120.53558 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3014 2.0066 1.1833 5 1 2.0220 3.0397 1.3283 6 6 2.9488 1.3119 2.1997 7 7 3.7576 0.3200 1.9052 8 14 2.6682 1.7901 3.9835 9 1 1.5204 1.0206 4.5275 10 1 3.8873 1.4865 4.7751 11 1 2.3735 3.2431 4.0660 12 6 2.1890 2.0357 -1.1658 13 8 2.7294 3.1244 -1.1781 14 6 1.7183 1.4287 -2.4309 15 6 0.9531 0.2556 -2.4249 16 6 0.5298 -0.2759 -3.6252 17 7 0.8437 0.2984 -4.7707 18 6 1.5677 1.4031 -4.8251 19 8 1.8628 1.9529 -6.0299 20 6 1.3587 1.2855 -7.1886 21 6 1.1066 2.3091 -8.2976 22 6 2.3822 0.2547 -7.6691 23 6 2.0297 2.0073 -3.6634 24 1 -0.3633 0.6476 0.7980 25 1 -0.3633 0.3675 -0.9598 26 1 -0.3633 -1.0148 0.1618 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 4.2094 -0.1641 2.6140 30 1 0.6952 -0.2246 -1.4926 31 1 -0.0641 -1.1781 -3.6276 32 1 0.4247 0.7816 -6.9401 33 1 2.0406 2.8130 -8.5461 34 1 0.7217 1.8000 -9.1811 35 1 0.3775 3.0434 -7.9552 36 1 3.3162 0.7586 -7.9176 37 1 2.5618 -0.4744 -6.8790 38 1 1.9979 -0.2541 -8.5531 39 1 2.6212 2.9095 -3.7121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268434042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:17 Heat of formation + Delta-G solvation = 0.720291 kcal Electronic energy + Delta-G solvation = -21884.636319 eV Core-core repulsion = 18601.623301 eV Total energy + Delta-G solvation = -3283.013018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.04500 -40.61113 -38.86141 -37.36857 -34.90782 -34.15176 -33.14446 -32.14969 -30.46230 -28.15593 -27.64250 -25.34266 -24.28686 -24.06646 -22.63108 -21.09402 -19.44117 -18.86190 -18.14845 -17.71741 -17.03313 -16.71581 -16.64797 -15.99927 -15.67143 -15.29822 -15.26145 -14.96002 -14.69313 -14.20814 -13.93992 -13.71495 -13.55538 -13.26128 -13.17131 -12.92191 -12.85214 -12.78276 -12.43568 -12.15813 -12.08655 -11.97377 -11.67099 -11.64433 -11.07028 -10.80604 -10.75727 -10.30063 -9.56646 -9.40990 -8.48472 -6.15356 -0.21949 0.17971 1.38983 1.42437 1.54629 1.94322 2.08645 2.27139 2.76019 2.91866 3.01648 3.33816 3.70205 3.93049 3.97608 4.05457 4.06826 4.11865 4.30473 4.32238 4.45544 4.68110 4.70812 4.72518 4.78058 4.85526 4.86750 4.91361 4.97605 5.16923 5.21556 5.26475 5.27904 5.40045 5.45023 5.50092 6.12809 6.29557 6.43883 6.79933 7.07065 7.26876 7.92838 8.55559 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.004151 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.212891 B = 6743.475886 C = 7077.933288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 N -0.423 5.423 4 C -0.357 4.357 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.871 5.871 8 Si 0.984 3.016 9 H -0.253 1.253 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.464 3.536 13 O -0.628 6.628 14 C -0.045 4.045 15 C -0.254 4.254 16 C 0.142 3.858 17 N -0.533 5.533 18 C 0.314 3.686 19 O -0.318 6.318 20 C 0.071 3.929 21 C -0.146 4.146 22 C -0.163 4.163 23 C -0.174 4.174 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.279 0.721 30 H 0.228 0.772 31 H 0.212 0.788 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 -7.639 -12.701 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.045 4.045 3 N -0.139 5.139 4 C -0.485 4.485 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.505 5.505 8 Si 0.806 3.194 9 H -0.177 1.177 10 H -0.202 1.202 11 H -0.199 1.199 12 C 0.255 3.745 13 O -0.516 6.516 14 C -0.056 4.056 15 C -0.273 4.273 16 C -0.013 4.013 17 N -0.258 5.258 18 C 0.136 3.864 19 O -0.226 6.226 20 C 0.015 3.985 21 C -0.203 4.203 22 C -0.220 4.220 23 C -0.196 4.196 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.244 0.756 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.010 -7.404 -13.448 17.800 hybrid contribution 0.865 1.009 1.611 2.088 sum -8.145 -6.396 -11.837 15.728 Atomic orbital electron populations 1.22671 0.93932 1.04765 1.03333 1.22332 0.95010 0.83446 1.03711 1.43650 1.53727 1.12880 1.03645 1.19401 1.40121 0.98711 0.90230 0.91651 1.26272 0.91840 0.96263 1.04547 1.70107 1.21916 1.22761 1.35739 0.85108 0.78632 0.79035 0.76619 1.17683 1.20245 1.19860 1.18955 0.83492 0.87634 0.84416 1.90547 1.48910 1.25134 1.87046 1.20324 0.96533 0.96143 0.92581 1.25147 0.99756 0.96687 1.05687 1.23172 0.94656 0.98529 0.84957 1.67192 1.16223 1.10052 1.32347 1.19450 0.91672 0.89659 0.85619 1.86294 1.72361 1.51683 1.12297 1.22660 0.98488 0.94587 0.82746 1.21925 1.02694 0.98690 0.96943 1.22187 0.99296 0.98383 1.02165 1.20986 1.05437 1.02980 0.90190 0.92569 0.89430 0.87394 0.90314 0.89166 0.91080 0.75637 0.77168 0.89476 0.91781 0.87774 0.92338 0.92285 0.93660 0.88488 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.60 8.98 71.98 0.65 -4.95 16 2 C 0.08 3.08 5.20 86.38 0.45 3.53 16 3 N -0.42 -21.81 2.49 -673.14 -1.67 -23.48 16 4 C -0.36 -20.14 8.73 84.13 0.73 -19.41 16 5 H 0.07 3.96 7.96 -2.91 -0.02 3.93 16 6 C 0.02 0.90 4.70 84.97 0.40 1.30 16 7 N -0.87 -46.32 12.23 21.69 0.27 -46.05 16 8 Si 0.98 40.51 29.64 68.60 2.03 42.54 16 9 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 10 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 C 0.46 24.98 7.57 86.83 0.66 25.63 16 13 O -0.63 -39.52 16.44 -3.89 -0.06 -39.58 16 14 C -0.04 -1.94 5.80 -19.90 -0.12 -2.05 16 15 C -0.25 -8.17 6.25 22.64 0.14 -8.03 16 16 C 0.14 3.71 11.16 84.61 0.94 4.65 16 17 N -0.53 -16.09 8.61 -309.16 -2.66 -18.75 16 18 C 0.31 11.10 7.45 84.78 0.63 11.73 16 19 O -0.32 -10.29 9.76 -90.04 -0.88 -11.17 16 20 C 0.07 1.65 3.11 30.60 0.10 1.74 16 21 C -0.15 -2.53 9.56 71.98 0.69 -1.84 16 22 C -0.16 -3.30 9.53 71.98 0.69 -2.62 16 23 C -0.17 -7.28 9.61 22.76 0.22 -7.06 16 24 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.09 2.40 5.16 -2.38 -0.01 2.39 16 26 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.08 3.42 6.09 -2.39 -0.01 3.41 16 28 H 0.09 3.30 5.22 -2.39 -0.01 3.29 16 29 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.23 6.51 1.52 -47.38 -0.07 6.44 16 31 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 32 H 0.09 2.04 6.98 -2.39 -0.02 2.03 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 5.50 7.76 -2.92 -0.02 5.48 16 Total: -1.00 -74.08 320.32 4.19 -69.89 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 1.00 Total: 23.96 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.18 Total: 2.64 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -4.07 Total: -88.29 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.94 Total: -50.75 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -74.08 4.19 -69.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268434042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.608 kcal (2) G-P(sol) polarization free energy of solvation -74.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds