Wall clock time and date at job start Tue Mar 31 2020 00:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.46956 * 2 1 4 4 C 1.34391 * 116.99769 * 180.02562 * 3 2 1 5 5 C 1.36325 * 119.99867 * 179.97438 * 4 3 2 6 6 C 1.43198 * 119.99960 * 0.02562 * 5 4 3 7 7 N 4.90265 * 99.07174 * 359.97438 * 2 1 3 8 8 C 1.47007 * 119.99893 * 180.27747 * 5 4 3 9 9 O 1.21665 * 120.00082 * 352.36991 * 8 5 4 10 10 N 1.34782 * 120.00192 * 172.36893 * 8 5 4 11 11 C 1.46495 * 119.99740 * 1.45905 * 10 8 5 12 12 C 1.50699 * 109.47424 * 81.86195 * 11 10 8 13 13 H 1.07998 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99662 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99415 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46983 * 60.00691 * 16 14 12 18 18 H 1.48501 * 109.46782 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47424 * 300.00438 * 16 14 12 20 20 C 1.46497 * 119.99933 * 181.45508 * 10 8 5 21 21 C 1.53002 * 109.47217 * 85.14468 * 20 10 8 22 22 C 1.53004 * 117.49628 * 246.55048 * 21 20 10 23 23 C 1.52999 * 117.49909 * 177.92855 * 21 20 10 24 24 H 1.08995 * 109.47199 * 59.99520 * 1 2 3 25 25 H 1.08997 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46647 * 299.99834 * 1 2 3 27 27 H 1.09003 * 109.46647 * 240.00166 * 2 1 3 28 28 H 1.08990 * 109.47178 * 119.99991 * 2 1 3 29 29 H 1.07994 * 120.00064 * 0.02562 * 4 3 2 30 30 H 1.09002 * 109.47362 * 201.86816 * 11 10 8 31 31 H 1.09005 * 109.47308 * 321.86272 * 11 10 8 32 32 H 0.97001 * 119.99982 * 179.97438 * 15 14 12 33 33 H 1.09006 * 109.46853 * 205.13824 * 20 10 8 34 34 H 1.08996 * 109.47339 * 325.13689 * 20 10 8 35 35 H 1.08993 * 115.54986 * 32.25081 * 21 20 10 36 36 H 1.09006 * 117.49887 * 359.97438 * 22 21 20 37 37 H 1.09000 * 117.50028 * 145.01698 * 22 21 20 38 38 H 1.08993 * 117.49524 * 214.97423 * 23 21 20 39 39 H 1.08999 * 117.50002 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3463 1.5450 -0.0005 5 6 3.8674 2.8048 -0.0011 6 6 2.9951 3.9404 -0.0006 7 7 2.3031 4.8413 -0.0022 8 6 5.3248 2.9974 -0.0078 9 8 6.0653 2.0415 0.1270 10 7 5.8406 4.2328 -0.1634 11 6 4.9488 5.3878 -0.2937 12 6 4.4988 5.8319 1.0742 13 1 4.8430 5.3067 1.9528 14 6 3.6485 6.9095 1.2040 15 7 3.2298 7.5494 0.1341 16 14 3.0901 7.4596 2.8996 17 1 4.2743 7.8371 3.7124 18 1 2.1863 8.6304 2.7674 19 1 2.3656 6.3483 3.5669 20 6 7.2929 4.4207 -0.2021 21 6 7.7989 4.1927 -1.6279 22 6 8.7003 2.9808 -1.8724 23 6 9.2937 4.3910 -1.8873 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.0042 0.6886 -0.0014 30 1 5.4800 6.2035 -0.7842 31 1 4.0795 5.1102 -0.8898 32 1 2.6312 8.3072 0.2254 33 1 7.5365 5.4357 0.1119 34 1 7.7696 3.7080 0.4709 35 1 7.1084 4.4751 -2.4226 36 1 8.9332 2.3461 -1.0173 37 1 8.6028 2.4656 -2.8280 38 1 9.5865 4.8035 -2.8527 39 1 9.9165 4.6842 -1.0422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269463003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:44 Heat of formation + Delta-G solvation = 19.656218 kcal Electronic energy + Delta-G solvation = -21816.208461 eV Core-core repulsion = 18534.016566 eV Total energy + Delta-G solvation = -3282.191895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.60992 -38.75596 -36.90139 -35.92178 -34.13246 -32.55344 -32.21983 -30.53505 -27.78624 -26.21071 -23.50456 -22.99603 -22.59720 -22.03721 -20.57442 -19.49452 -17.95875 -16.48416 -16.40622 -16.01989 -15.71530 -15.61698 -14.54898 -14.46696 -14.26403 -13.59445 -13.23721 -13.05861 -12.98131 -12.73764 -12.31551 -12.11996 -11.99412 -11.90746 -11.73040 -11.30279 -11.23638 -11.14773 -11.05254 -10.85859 -10.72360 -10.22940 -10.15375 -9.82186 -9.62426 -9.50792 -8.95061 -8.36876 -8.17922 -7.59084 -5.99869 -4.04184 1.55269 2.97196 3.34459 3.39099 3.41632 3.69785 3.95744 4.16019 4.28148 4.53026 4.66350 4.75006 4.81757 4.90682 5.05999 5.11757 5.26225 5.32685 5.36868 5.39922 5.50145 5.64945 5.74920 5.84888 5.88158 5.95639 6.17345 6.17709 6.24618 6.38684 6.40040 6.61283 6.83139 7.27397 7.29273 7.58326 7.92167 8.19768 8.34015 8.86376 8.99457 9.11116 9.61494 11.07457 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.008331 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.472115 B = 3359.976045 C = 5805.749315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.052 3.948 3 O -0.310 6.310 4 C 0.159 3.841 5 C -0.151 4.151 6 C 0.237 3.763 7 N -0.360 5.360 8 C 0.584 3.416 9 O -0.576 6.576 10 N -0.583 5.583 11 C 0.219 3.781 12 C -0.552 4.552 13 H 0.056 0.944 14 C 0.087 3.913 15 N -0.868 5.868 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.153 3.847 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.182 4.182 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 -14.000 -3.113 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.086 3.914 5 C -0.159 4.159 6 C -0.077 4.077 7 N -0.037 5.037 8 C 0.373 3.627 9 O -0.460 6.460 10 N -0.311 5.311 11 C 0.099 3.901 12 C -0.591 4.591 13 H 0.075 0.925 14 C -0.119 4.119 15 N -0.504 5.504 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.203 1.203 20 C 0.029 3.971 21 C -0.180 4.180 22 C -0.208 4.208 23 C -0.220 4.220 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.171 0.829 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.006 -12.759 -3.121 13.174 hybrid contribution 0.109 0.076 0.967 0.976 sum 1.115 -12.683 -2.154 12.913 Atomic orbital electron populations 1.21780 0.92745 1.02699 1.03998 1.23369 0.96367 0.80477 1.02004 1.86244 1.20390 1.29873 1.85513 1.23190 0.83180 0.96878 0.88109 1.17224 0.91698 0.87787 1.19146 1.24333 0.94544 0.92704 0.96152 1.81265 1.11366 1.05365 1.05736 1.17222 0.85818 0.83176 0.76470 1.90690 1.60629 1.40617 1.54050 1.48020 1.06510 1.07765 1.68845 1.20122 0.89464 0.82486 0.98064 1.21257 1.30402 1.15266 0.92129 0.92532 1.24701 0.95143 0.95730 0.96324 1.69865 1.32246 1.20117 1.28162 0.86700 0.78522 0.78169 0.84893 1.20423 1.21223 1.20277 1.20862 0.80909 1.01908 0.93371 1.22781 0.92747 1.02848 0.99599 1.22931 1.04271 0.90810 1.02756 1.22903 0.96140 1.00343 1.02591 0.91321 0.90345 0.91299 0.91268 0.91245 0.82909 0.94740 0.93015 0.92765 0.89965 0.90849 0.87935 0.88619 0.89583 0.89247 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.05 0.48 6.84 37.16 0.25 0.73 16 3 O -0.31 -4.47 9.50 -15.00 -0.14 -4.61 16 4 C 0.16 2.42 9.99 30.04 0.30 2.72 16 5 C -0.15 -3.00 5.82 -105.11 -0.61 -3.61 16 6 C 0.24 5.58 9.56 -22.47 -0.21 5.37 16 7 N -0.36 -9.47 14.52 41.84 0.61 -8.86 16 8 C 0.58 12.26 7.51 -12.70 -0.10 12.16 16 9 O -0.58 -12.02 15.94 5.22 0.08 -11.94 16 10 N -0.58 -12.65 2.49 -176.48 -0.44 -13.09 16 11 C 0.22 5.51 4.69 -5.20 -0.02 5.48 16 12 C -0.55 -15.21 6.84 -34.44 -0.24 -15.45 16 13 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 14 C 0.09 2.45 4.11 -17.82 -0.07 2.37 16 15 N -0.87 -25.40 12.73 55.43 0.71 -24.69 16 16 Si 0.89 22.44 29.54 -169.99 -5.02 17.41 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.15 2.84 5.61 -4.04 -0.02 2.82 16 21 C -0.16 -2.59 5.98 -90.62 -0.54 -3.13 16 22 C -0.17 -2.40 10.18 -26.73 -0.27 -2.68 16 23 C -0.18 -2.39 10.25 -26.73 -0.27 -2.66 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.15 1.86 7.52 -52.49 -0.39 1.47 16 30 H 0.03 0.91 8.01 -51.93 -0.42 0.50 16 31 H 0.05 1.39 4.39 -51.93 -0.23 1.16 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 34 H 0.07 1.34 7.30 -51.93 -0.38 0.96 16 35 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.10 1.38 8.04 -51.93 -0.42 0.96 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -32.80 336.40 -6.17 -38.97 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.60 Total: -1.49 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.43 Total: 3.24 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.87 Total: -46.64 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.06 Total: -16.55 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.80 -6.17 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269463003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.623 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds