Wall clock time and date at job start Tue Mar 31 2020 00:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.46956 * 2 1 4 4 C 1.34391 * 116.99769 * 180.02562 * 3 2 1 5 5 C 1.36325 * 119.99867 * 179.97438 * 4 3 2 6 6 C 1.43198 * 119.99960 * 0.02562 * 5 4 3 7 7 N 4.90265 * 99.07174 * 359.97438 * 2 1 3 8 8 C 1.47007 * 119.99893 * 180.27747 * 5 4 3 9 9 O 1.21665 * 120.00082 * 352.36991 * 8 5 4 10 10 N 1.34782 * 120.00192 * 172.36893 * 8 5 4 11 11 C 1.46495 * 119.99740 * 1.45905 * 10 8 5 12 12 C 1.50699 * 109.47424 * 81.86195 * 11 10 8 13 13 H 1.07998 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99662 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99415 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46983 * 60.00691 * 16 14 12 18 18 H 1.48501 * 109.46782 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47424 * 300.00438 * 16 14 12 20 20 C 1.46497 * 119.99933 * 181.45508 * 10 8 5 21 21 C 1.53002 * 109.47217 * 85.14468 * 20 10 8 22 22 C 1.53004 * 117.49628 * 246.55048 * 21 20 10 23 23 C 1.52999 * 117.49909 * 177.92855 * 21 20 10 24 24 H 1.08995 * 109.47199 * 59.99520 * 1 2 3 25 25 H 1.08997 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46647 * 299.99834 * 1 2 3 27 27 H 1.09003 * 109.46647 * 240.00166 * 2 1 3 28 28 H 1.08990 * 109.47178 * 119.99991 * 2 1 3 29 29 H 1.07994 * 120.00064 * 0.02562 * 4 3 2 30 30 H 1.09002 * 109.47362 * 201.86816 * 11 10 8 31 31 H 1.09005 * 109.47308 * 321.86272 * 11 10 8 32 32 H 0.97001 * 119.99982 * 179.97438 * 15 14 12 33 33 H 1.09006 * 109.46853 * 205.13824 * 20 10 8 34 34 H 1.08996 * 109.47339 * 325.13689 * 20 10 8 35 35 H 1.08993 * 115.54986 * 32.25081 * 21 20 10 36 36 H 1.09006 * 117.49887 * 359.97438 * 22 21 20 37 37 H 1.09000 * 117.50028 * 145.01698 * 22 21 20 38 38 H 1.08993 * 117.49524 * 214.97423 * 23 21 20 39 39 H 1.08999 * 117.50002 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3463 1.5450 -0.0005 5 6 3.8674 2.8048 -0.0011 6 6 2.9951 3.9404 -0.0006 7 7 2.3031 4.8413 -0.0022 8 6 5.3248 2.9974 -0.0078 9 8 6.0653 2.0415 0.1270 10 7 5.8406 4.2328 -0.1634 11 6 4.9488 5.3878 -0.2937 12 6 4.4988 5.8319 1.0742 13 1 4.8430 5.3067 1.9528 14 6 3.6485 6.9095 1.2040 15 7 3.2298 7.5494 0.1341 16 14 3.0901 7.4596 2.8996 17 1 4.2743 7.8371 3.7124 18 1 2.1863 8.6304 2.7674 19 1 2.3656 6.3483 3.5669 20 6 7.2929 4.4207 -0.2021 21 6 7.7989 4.1927 -1.6279 22 6 8.7003 2.9808 -1.8724 23 6 9.2937 4.3910 -1.8873 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.0042 0.6886 -0.0014 30 1 5.4800 6.2035 -0.7842 31 1 4.0795 5.1102 -0.8898 32 1 2.6312 8.3072 0.2254 33 1 7.5365 5.4357 0.1119 34 1 7.7696 3.7080 0.4709 35 1 7.1084 4.4751 -2.4226 36 1 8.9332 2.3461 -1.0173 37 1 8.6028 2.4656 -2.8280 38 1 9.5865 4.8035 -2.8527 39 1 9.9165 4.6842 -1.0422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269463003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:43 Heat of formation + Delta-G solvation = -0.674067 kcal Electronic energy + Delta-G solvation = -21817.090048 eV Core-core repulsion = 18534.016566 eV Total energy + Delta-G solvation = -3283.073482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11721 -40.01923 -38.14864 -37.70894 -35.78095 -34.36563 -33.58883 -31.67409 -29.60497 -27.83434 -25.07434 -24.33677 -23.85833 -23.11697 -21.95678 -20.96241 -19.44230 -18.55136 -17.68200 -17.32964 -16.97618 -16.92259 -16.38407 -16.02257 -15.77044 -14.87865 -14.79846 -14.50446 -14.30223 -14.07775 -13.89802 -13.63542 -13.48667 -13.35097 -13.04504 -12.90237 -12.72197 -12.56127 -12.30364 -12.27619 -12.21047 -11.85183 -11.74246 -11.66576 -11.25761 -10.79326 -10.62718 -10.48754 -9.68919 -9.25199 -8.14919 -6.24694 0.20222 1.30813 1.34476 1.39594 1.82855 2.05429 2.33103 2.47956 2.61007 3.04988 3.05765 3.24033 3.44072 3.91731 3.94430 4.04827 4.14096 4.14725 4.23417 4.26968 4.44714 4.47625 4.74355 4.82745 4.85324 4.87762 4.92769 4.97966 5.00687 5.08664 5.22281 5.28081 5.34183 5.35433 5.65642 5.87571 6.08973 6.17118 6.56749 6.84104 7.24136 7.38695 7.48455 8.90627 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.008331 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.472115 B = 3359.976045 C = 5805.749315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.041 3.959 3 O -0.332 6.332 4 C 0.230 3.770 5 C -0.223 4.223 6 C 0.258 3.742 7 N -0.430 5.430 8 C 0.588 3.412 9 O -0.578 6.578 10 N -0.594 5.594 11 C 0.240 3.760 12 C -0.551 4.551 13 H 0.044 0.956 14 C 0.047 3.953 15 N -0.894 5.894 16 Si 0.937 3.063 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.154 3.846 21 C -0.186 4.186 22 C -0.161 4.161 23 C -0.159 4.159 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.196 0.804 30 H 0.012 0.988 31 H 0.037 0.963 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -16.809 -2.892 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.156 3.844 5 C -0.231 4.231 6 C -0.055 4.055 7 N -0.109 5.109 8 C 0.379 3.621 9 O -0.463 6.463 10 N -0.323 5.323 11 C 0.118 3.882 12 C -0.589 4.589 13 H 0.063 0.937 14 C -0.156 4.156 15 N -0.531 5.531 16 Si 0.763 3.237 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.208 1.208 20 C 0.031 3.969 21 C -0.205 4.205 22 C -0.198 4.198 23 C -0.197 4.197 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.213 0.787 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.745 -15.598 -2.896 15.961 hybrid contribution -0.225 0.675 0.877 1.129 sum 1.520 -14.924 -2.019 15.136 Atomic orbital electron populations 1.21861 0.92324 1.04433 1.02755 1.23899 0.96769 0.77729 1.04811 1.86251 1.20143 1.34203 1.83482 1.23603 0.83921 0.96184 0.80648 1.17243 0.90830 0.88394 1.26680 1.24976 0.93844 0.92623 0.94046 1.81252 1.13442 1.06994 1.09184 1.17283 0.86316 0.82728 0.75809 1.90663 1.60837 1.40159 1.54626 1.47961 1.07309 1.07206 1.69822 1.19602 0.89175 0.83006 0.96426 1.21366 1.30043 1.14911 0.92613 0.93735 1.25305 0.95273 0.95969 0.99021 1.69964 1.32893 1.20514 1.29724 0.85947 0.78471 0.77614 0.81669 1.19119 1.20748 1.20825 1.20931 0.79395 1.01386 0.95191 1.22587 0.94423 1.06043 0.97483 1.22971 1.02706 0.90835 1.03273 1.23021 0.93450 0.99335 1.03867 0.92460 0.87072 0.92726 0.88263 0.88597 0.78743 0.96983 0.94524 0.93056 0.90995 0.90579 0.89526 0.88794 0.88277 0.87497 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.04 0.57 6.84 71.98 0.49 1.06 16 3 O -0.33 -8.69 9.50 -76.59 -0.73 -9.42 16 4 C 0.23 6.37 9.99 67.37 0.67 7.04 16 5 C -0.22 -8.77 5.82 -20.18 -0.12 -8.89 16 6 C 0.26 12.49 9.56 88.33 0.84 13.33 16 7 N -0.43 -23.56 14.52 19.00 0.28 -23.28 16 8 C 0.59 24.51 7.51 86.54 0.65 25.16 16 9 O -0.58 -23.19 15.94 -4.24 -0.07 -23.26 16 10 N -0.59 -26.37 2.49 -830.49 -2.07 -28.44 16 11 C 0.24 12.59 4.69 85.63 0.40 12.99 16 12 C -0.55 -31.31 6.84 25.60 0.18 -31.13 16 13 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 14 C 0.05 2.74 4.11 84.66 0.35 3.09 16 15 N -0.89 -54.09 12.73 21.45 0.27 -53.82 16 16 Si 0.94 46.75 29.54 68.60 2.03 48.78 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 20 C 0.15 5.78 5.61 86.38 0.48 6.26 16 21 C -0.19 -5.94 5.98 -10.79 -0.06 -6.01 16 22 C -0.16 -4.22 10.18 30.60 0.31 -3.91 16 23 C -0.16 -3.86 10.25 30.59 0.31 -3.54 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.20 3.75 7.52 -2.91 -0.02 3.73 16 30 H 0.01 0.68 8.01 -2.39 -0.02 0.66 16 31 H 0.04 2.08 4.39 -2.38 -0.01 2.07 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.07 2.76 8.03 -2.38 -0.02 2.74 16 34 H 0.08 2.77 7.30 -2.39 -0.02 2.75 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.09 2.51 8.04 -2.38 -0.02 2.49 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.27 336.40 6.01 -68.26 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.05 Total: 7.11 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.25 Total: 14.07 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -1.52 Total: -105.54 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.80 Total: -32.67 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.27 6.01 -68.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269463003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.585 kcal (2) G-P(sol) polarization free energy of solvation -74.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds