Wall clock time and date at job start Tue Mar 31 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47237 * 2 1 4 4 C 1.46500 * 120.00229 * 271.37966 * 3 2 1 5 5 C 1.50697 * 109.47476 * 270.00548 * 4 3 2 6 6 H 1.08004 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99879 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00030 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47405 * 90.00359 * 9 7 5 11 11 H 1.48505 * 109.47285 * 210.00053 * 9 7 5 12 12 H 1.48496 * 109.47059 * 330.00065 * 9 7 5 13 13 C 1.34779 * 120.00212 * 91.38630 * 3 2 1 14 14 O 1.21591 * 119.99876 * 175.24112 * 13 3 2 15 15 C 1.47521 * 119.99866 * 355.23468 * 13 3 2 16 16 C 1.39994 * 120.59567 * 85.86227 * 15 13 3 17 17 C 1.50693 * 120.82355 * 359.97438 * 16 15 13 18 18 C 1.38340 * 118.34650 * 180.25193 * 16 15 13 19 19 C 1.38356 * 119.46010 * 359.46003 * 18 16 15 20 20 C 1.50696 * 119.40866 * 180.27771 * 19 18 16 21 21 N 1.31885 * 121.18405 * 0.55585 * 19 18 16 22 22 C 1.32235 * 121.80082 * 359.71827 * 21 19 18 23 23 O 1.35425 * 119.80059 * 180.02562 * 22 21 19 24 24 H 1.08996 * 109.47043 * 173.83731 * 1 2 3 25 25 H 1.08993 * 109.47008 * 293.84107 * 1 2 3 26 26 H 1.09001 * 109.46713 * 53.83835 * 1 2 3 27 27 H 1.09003 * 109.47225 * 239.99966 * 2 1 3 28 28 H 1.09001 * 109.47212 * 120.00126 * 2 1 3 29 29 H 1.09007 * 109.46570 * 30.00100 * 4 3 2 30 30 H 1.08999 * 109.47476 * 149.99764 * 4 3 2 31 31 H 0.96996 * 119.99889 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47374 * 84.72397 * 17 16 15 33 33 H 1.08999 * 109.47368 * 324.72814 * 17 16 15 34 34 H 1.09000 * 109.47184 * 204.72400 * 17 16 15 35 35 H 1.07998 * 120.26926 * 179.72907 * 18 16 15 36 36 H 1.09002 * 109.47227 * 270.27927 * 20 19 18 37 37 H 1.08999 * 109.47299 * 30.27194 * 20 19 18 38 38 H 1.08998 * 109.47072 * 150.27645 * 20 19 18 39 39 H 0.96695 * 114.00312 * 270.63320 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2337 2.0820 -1.2683 5 6 3.6467 1.8488 -1.7376 6 1 4.3174 1.2397 -1.1496 7 6 4.0832 2.4129 -2.9175 8 7 5.3165 2.2097 -3.3268 9 14 2.9230 3.4656 -3.9348 10 1 3.0351 4.8827 -3.5052 11 1 3.2838 3.3539 -5.3710 12 1 1.5278 2.9973 -3.7371 13 6 2.2696 2.0071 1.1669 14 8 2.7563 3.1214 1.1665 15 6 1.9541 1.3404 2.4444 16 6 2.8734 0.4680 3.0390 17 6 4.2043 0.1890 2.3896 18 6 2.5273 -0.1360 4.2344 19 6 1.3002 0.1448 4.8085 20 6 0.9269 -0.5090 6.1139 21 7 0.4489 0.9702 4.2309 22 6 0.7276 1.5696 3.0856 23 8 -0.1764 2.4101 2.5285 24 1 -0.3633 -1.0217 -0.1103 25 1 -0.3633 0.4154 0.9399 26 1 -0.3633 0.6064 -0.8297 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5357 1.7039 -2.0154 30 1 2.0699 3.1501 -1.1257 31 1 5.6235 2.6062 -4.1570 32 1 4.9165 0.9640 2.6730 33 1 4.0859 0.1831 1.3061 34 1 4.5734 -0.7819 2.7201 35 1 3.2112 -0.8178 4.7179 36 1 0.4216 -1.4542 5.9155 37 1 1.8282 -0.6947 6.6981 38 1 0.2610 0.1488 6.6723 39 1 -0.8024 1.9760 1.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271101176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:54 Heat of formation + Delta-G solvation = -42.630376 kcal Electronic energy + Delta-G solvation = -22458.467158 eV Core-core repulsion = 19173.574314 eV Total energy + Delta-G solvation = -3284.892844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91862 -38.73471 -37.33876 -35.45409 -34.16185 -32.69792 -31.79301 -30.43998 -28.84254 -27.69565 -27.10671 -23.65320 -23.09439 -22.39517 -21.26104 -18.97282 -18.41285 -17.21222 -16.95955 -16.76062 -16.08857 -15.34649 -14.60195 -14.39160 -14.30230 -13.85898 -13.56016 -13.25467 -13.20567 -13.02897 -13.00613 -12.48991 -12.44455 -12.25324 -12.02843 -11.89002 -11.78592 -11.59128 -11.54803 -11.02250 -10.82821 -10.55376 -10.20022 -9.82778 -9.57385 -9.48111 -9.10382 -8.71390 -8.61089 -7.82124 -6.11623 -4.10529 0.83039 1.10351 3.13832 3.27119 3.30943 3.33596 3.36053 3.62331 3.71599 4.37249 4.44281 4.54773 4.79655 4.98031 5.09371 5.20539 5.22546 5.27045 5.35077 5.40024 5.43492 5.52019 5.61283 5.71804 5.76823 5.85791 5.90897 6.03434 6.11879 6.23254 6.26463 6.46945 6.65142 6.88813 7.25399 7.45383 7.56931 7.83866 8.12563 8.42133 8.83064 8.91596 9.48484 11.01603 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.005376 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.681743 B = 5207.502773 C = 5563.229381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.585 5.585 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.565 3.435 14 O -0.520 6.520 15 C -0.181 4.181 16 C 0.008 3.992 17 C -0.128 4.128 18 C -0.186 4.186 19 C 0.157 3.843 20 C -0.103 4.103 21 N -0.508 5.508 22 C 0.347 3.653 23 O -0.472 6.472 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.546 -9.890 13.539 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.317 5.317 4 C 0.096 3.904 5 C -0.567 4.567 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.349 3.651 14 O -0.395 6.395 15 C -0.188 4.188 16 C 0.000 4.000 17 C -0.184 4.184 18 C -0.206 4.206 19 C 0.019 3.981 20 C -0.161 4.161 21 N -0.228 5.228 22 C 0.168 3.832 23 O -0.279 6.279 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.680 -8.604 14.001 19.072 hybrid contribution -0.006 0.146 -1.317 1.325 sum -9.687 -8.458 12.684 18.062 Atomic orbital electron populations 1.22236 0.96918 1.02054 1.01315 1.21466 0.93421 0.83901 1.03153 1.47930 1.63800 1.13282 1.06641 1.19703 0.97715 0.93181 0.79770 1.21282 0.95738 1.32694 1.06948 0.90692 1.24838 0.95026 0.95763 0.97264 1.69889 1.16038 1.44795 1.22755 0.86871 0.81588 0.81739 0.79619 1.19870 1.21055 1.19067 1.17678 0.78966 0.85620 0.82812 1.90805 1.42588 1.19442 1.86673 1.21092 0.96944 1.01518 0.99198 1.20355 0.95375 0.91111 0.93187 1.21004 0.92447 1.02695 1.02297 1.21758 0.98282 1.03832 0.96765 1.21076 0.89503 0.91689 0.95862 1.20747 1.02723 1.00509 0.92073 1.66988 1.35884 1.09411 1.10550 1.18919 0.87500 0.88253 0.88529 1.84786 1.46397 1.33089 1.63675 0.91642 0.94229 0.91621 0.89285 0.91556 0.94979 0.94566 0.92536 0.89576 0.89541 0.90507 0.84036 0.90152 0.90407 0.90345 0.74395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.10 1.62 5.81 -4.04 -0.02 1.59 16 3 N -0.59 -11.84 2.42 -176.30 -0.43 -12.27 16 4 C 0.22 5.18 4.20 -5.19 -0.02 5.16 16 5 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 6 H 0.07 2.28 8.06 -52.48 -0.42 1.85 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 9 Si 0.87 21.31 27.47 -169.99 -4.67 16.65 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.56 12.03 5.37 -12.48 -0.07 11.96 16 14 O -0.52 -13.62 16.73 5.29 0.09 -13.53 16 15 C -0.18 -3.15 4.17 -104.69 -0.44 -3.59 16 16 C 0.01 0.11 5.11 -103.93 -0.53 -0.42 16 17 C -0.13 -1.81 9.49 36.00 0.34 -1.46 16 18 C -0.19 -2.18 9.39 -39.50 -0.37 -2.56 16 19 C 0.16 1.90 6.78 -82.53 -0.56 1.34 16 20 C -0.10 -0.82 10.16 36.00 0.37 -0.46 16 21 N -0.51 -7.60 10.28 -9.21 -0.09 -7.70 16 22 C 0.35 5.72 6.98 -16.61 -0.12 5.60 16 23 O -0.47 -7.58 13.01 -17.97 -0.23 -7.81 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.45 5.48 -51.93 -0.28 0.17 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 28 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 29 H 0.03 0.72 7.13 -51.92 -0.37 0.35 16 30 H 0.04 0.94 6.92 -51.93 -0.36 0.58 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.45 7.03 -51.93 -0.36 1.09 16 34 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.40 4.59 7.31 45.56 0.33 4.92 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -35.59 326.90 -5.85 -41.45 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.74 Total: 2.32 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.48 Total: 2.39 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.25 Total: -46.38 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.15 Total: -21.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.59 -5.85 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271101176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.183 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds