Wall clock time and date at job start Tue Mar 31 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47237 * 2 1 4 4 C 1.46500 * 120.00229 * 271.37966 * 3 2 1 5 5 C 1.50697 * 109.47476 * 270.00548 * 4 3 2 6 6 H 1.08004 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99879 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00030 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47405 * 90.00359 * 9 7 5 11 11 H 1.48505 * 109.47285 * 210.00053 * 9 7 5 12 12 H 1.48496 * 109.47059 * 330.00065 * 9 7 5 13 13 C 1.34779 * 120.00212 * 91.38630 * 3 2 1 14 14 O 1.21591 * 119.99876 * 175.24112 * 13 3 2 15 15 C 1.47521 * 119.99866 * 355.23468 * 13 3 2 16 16 C 1.39994 * 120.59567 * 85.86227 * 15 13 3 17 17 C 1.50693 * 120.82355 * 359.97438 * 16 15 13 18 18 C 1.38340 * 118.34650 * 180.25193 * 16 15 13 19 19 C 1.38356 * 119.46010 * 359.46003 * 18 16 15 20 20 C 1.50696 * 119.40866 * 180.27771 * 19 18 16 21 21 N 1.31885 * 121.18405 * 0.55585 * 19 18 16 22 22 C 1.32235 * 121.80082 * 359.71827 * 21 19 18 23 23 O 1.35425 * 119.80059 * 180.02562 * 22 21 19 24 24 H 1.08996 * 109.47043 * 173.83731 * 1 2 3 25 25 H 1.08993 * 109.47008 * 293.84107 * 1 2 3 26 26 H 1.09001 * 109.46713 * 53.83835 * 1 2 3 27 27 H 1.09003 * 109.47225 * 239.99966 * 2 1 3 28 28 H 1.09001 * 109.47212 * 120.00126 * 2 1 3 29 29 H 1.09007 * 109.46570 * 30.00100 * 4 3 2 30 30 H 1.08999 * 109.47476 * 149.99764 * 4 3 2 31 31 H 0.96996 * 119.99889 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47374 * 84.72397 * 17 16 15 33 33 H 1.08999 * 109.47368 * 324.72814 * 17 16 15 34 34 H 1.09000 * 109.47184 * 204.72400 * 17 16 15 35 35 H 1.07998 * 120.26926 * 179.72907 * 18 16 15 36 36 H 1.09002 * 109.47227 * 270.27927 * 20 19 18 37 37 H 1.08999 * 109.47299 * 30.27194 * 20 19 18 38 38 H 1.08998 * 109.47072 * 150.27645 * 20 19 18 39 39 H 0.96695 * 114.00312 * 270.63320 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2337 2.0820 -1.2683 5 6 3.6467 1.8488 -1.7376 6 1 4.3174 1.2397 -1.1496 7 6 4.0832 2.4129 -2.9175 8 7 5.3165 2.2097 -3.3268 9 14 2.9230 3.4656 -3.9348 10 1 3.0351 4.8827 -3.5052 11 1 3.2838 3.3539 -5.3710 12 1 1.5278 2.9973 -3.7371 13 6 2.2696 2.0071 1.1669 14 8 2.7563 3.1214 1.1665 15 6 1.9541 1.3404 2.4444 16 6 2.8734 0.4680 3.0390 17 6 4.2043 0.1890 2.3896 18 6 2.5273 -0.1360 4.2344 19 6 1.3002 0.1448 4.8085 20 6 0.9269 -0.5090 6.1139 21 7 0.4489 0.9702 4.2309 22 6 0.7276 1.5696 3.0856 23 8 -0.1764 2.4101 2.5285 24 1 -0.3633 -1.0217 -0.1103 25 1 -0.3633 0.4154 0.9399 26 1 -0.3633 0.6064 -0.8297 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5357 1.7039 -2.0154 30 1 2.0699 3.1501 -1.1257 31 1 5.6235 2.6062 -4.1570 32 1 4.9165 0.9640 2.6730 33 1 4.0859 0.1831 1.3061 34 1 4.5734 -0.7819 2.7201 35 1 3.2112 -0.8178 4.7179 36 1 0.4216 -1.4542 5.9155 37 1 1.8282 -0.6947 6.6981 38 1 0.2610 0.1488 6.6723 39 1 -0.8024 1.9760 1.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271101176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:54 Heat of formation + Delta-G solvation = -71.142518 kcal Electronic energy + Delta-G solvation = -22459.703537 eV Core-core repulsion = 19173.574314 eV Total energy + Delta-G solvation = -3286.129224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.13911 -40.25167 -38.49084 -37.11497 -35.37318 -34.72934 -32.80588 -31.95168 -30.25303 -29.00844 -28.31411 -25.10189 -24.49121 -23.83721 -22.43210 -20.47123 -19.57198 -19.14891 -18.35932 -18.19327 -17.61219 -16.69689 -16.31414 -15.82749 -15.38805 -15.13720 -14.81696 -14.76353 -14.44249 -14.28813 -14.15261 -13.94416 -13.76581 -13.49489 -13.24739 -13.22585 -12.97510 -12.82149 -12.65496 -12.59460 -12.48999 -12.09693 -12.02535 -11.74849 -11.22483 -10.83811 -10.61521 -10.47232 -9.82815 -9.54517 -8.34432 -6.39157 -0.27061 0.00848 1.31463 1.36225 1.43558 1.53936 2.09969 2.30085 2.35514 2.52643 2.99802 3.35008 3.54086 3.58356 3.96658 4.00432 4.16296 4.26333 4.29176 4.44265 4.52226 4.55777 4.60871 4.71485 4.81433 4.85884 4.86622 4.90073 4.96116 5.03014 5.16013 5.19063 5.23691 5.43278 5.53867 5.55549 6.21288 6.40220 6.52670 6.61594 6.78361 7.14704 7.28546 8.82196 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.005376 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.681743 B = 5207.502773 C = 5563.229381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.585 5.585 4 C 0.225 3.775 5 C -0.533 4.533 6 H 0.033 0.967 7 C 0.015 3.985 8 N -0.943 5.943 9 Si 0.942 3.058 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.566 3.434 14 O -0.586 6.586 15 C -0.208 4.208 16 C 0.000 4.000 17 C -0.124 4.124 18 C -0.169 4.169 19 C 0.161 3.839 20 C -0.101 4.101 21 N -0.520 5.520 22 C 0.341 3.659 23 O -0.489 6.489 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.187 0.813 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 -12.003 15.267 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 N -0.315 5.315 4 C 0.103 3.897 5 C -0.572 4.572 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.583 5.583 9 Si 0.765 3.235 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.160 1.160 13 C 0.353 3.647 14 O -0.467 6.467 15 C -0.214 4.214 16 C -0.008 4.008 17 C -0.181 4.181 18 C -0.188 4.188 19 C 0.023 3.977 20 C -0.158 4.158 21 N -0.241 5.241 22 C 0.162 3.838 23 O -0.300 6.300 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.204 0.796 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -11.788 -10.785 15.732 22.423 hybrid contribution 0.704 0.685 -1.714 1.975 sum -11.084 -10.099 14.019 20.527 Atomic orbital electron populations 1.22164 0.93842 1.04042 1.01571 1.21750 0.95880 0.81148 1.03569 1.47979 1.63270 1.14900 1.05333 1.19395 0.95628 0.92668 0.82016 1.21489 0.97257 1.31854 1.06575 0.94890 1.25779 0.96783 0.97112 0.98686 1.70035 1.18249 1.46357 1.23628 0.85794 0.80717 0.79013 0.77935 1.20545 1.19871 1.15950 1.18286 0.77334 0.84845 0.84265 1.90746 1.45659 1.22442 1.87828 1.20820 0.98823 1.03815 0.97985 1.20511 0.94827 0.91074 0.94428 1.20974 0.92479 1.04572 1.00042 1.22167 0.98600 1.03036 0.94975 1.21940 0.89004 0.90063 0.96730 1.20922 1.04326 1.00794 0.89747 1.67133 1.36840 1.10262 1.09872 1.18938 0.87184 0.88578 0.89073 1.84737 1.46861 1.34111 1.64257 0.88494 0.93462 0.92110 0.89885 0.90153 0.92605 0.96674 0.92270 0.90943 0.93171 0.86312 0.79600 0.87952 0.87509 0.90621 0.72658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.83 16 2 C 0.10 3.01 5.81 86.38 0.50 3.52 16 3 N -0.59 -24.38 2.42 -829.93 -2.01 -26.39 16 4 C 0.22 11.03 4.20 85.63 0.36 11.39 16 5 C -0.53 -31.25 9.94 25.60 0.25 -30.99 16 6 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 7 C 0.01 0.86 5.47 84.65 0.46 1.33 16 8 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 9 Si 0.94 44.45 27.47 68.60 1.88 46.33 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 13 C 0.57 25.14 5.37 86.69 0.47 25.61 16 14 O -0.59 -32.73 16.73 -4.00 -0.07 -32.79 16 15 C -0.21 -7.26 4.17 -19.91 -0.08 -7.35 16 16 C 0.00 -0.01 5.11 -19.42 -0.10 -0.11 16 17 C -0.12 -3.49 9.49 71.23 0.68 -2.82 16 18 C -0.17 -3.30 9.39 22.32 0.21 -3.09 16 19 C 0.16 3.31 6.78 42.58 0.29 3.60 16 20 C -0.10 -1.11 10.16 71.23 0.72 -0.39 16 21 N -0.52 -14.45 10.28 -296.06 -3.04 -17.49 16 22 C 0.34 11.00 6.98 85.13 0.59 11.60 16 23 O -0.49 -15.72 13.01 -87.21 -1.13 -16.85 16 24 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 0.99 5.48 -2.39 -0.01 0.98 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 2.61 8.08 -2.39 -0.02 2.59 16 28 H 0.08 2.22 5.94 -2.39 -0.01 2.21 16 29 H 0.06 2.47 7.13 -2.38 -0.02 2.45 16 30 H 0.02 0.81 6.92 -2.39 -0.02 0.79 16 31 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.05 1.77 7.03 -2.39 -0.02 1.76 16 34 H 0.12 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.62 8.07 -2.39 -0.02 0.60 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.41 9.35 7.31 -74.06 -0.54 8.81 16 Total: -1.00 -83.62 326.90 1.50 -82.13 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.47 Total: 14.62 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.09 Total: 9.46 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -4.75 Total: -102.89 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -1.20 Total: -49.65 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -83.62 1.50 -82.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271101176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.984 kcal (2) G-P(sol) polarization free energy of solvation -83.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds