Wall clock time and date at job start Tue Mar 31 2020 00:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46805 * 2 1 4 4 C 1.35983 * 116.99815 * 180.02562 * 3 2 1 5 5 C 1.38544 * 120.08087 * 359.97438 * 4 3 2 6 6 C 1.38253 * 120.01451 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.17699 * 359.97438 * 6 5 4 8 8 C 1.38202 * 120.16221 * 0.02562 * 7 6 5 9 9 C 1.38707 * 119.98441 * 359.97438 * 8 7 6 10 10 N 1.40176 * 120.08943 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99835 * 24.76859 * 10 9 8 12 12 O 1.21591 * 120.00277 * 5.63912 * 11 10 9 13 13 N 1.34777 * 119.99684 * 185.64072 * 11 10 9 14 14 C 1.46502 * 119.99906 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47191 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47485 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99801 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00315 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99765 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46892 * 90.00283 * 20 18 16 22 22 H 1.48490 * 109.47233 * 210.00205 * 20 18 16 23 23 H 1.48498 * 109.47221 * 330.00691 * 20 18 16 24 24 H 1.08996 * 109.47301 * 299.99937 * 1 2 3 25 25 H 1.09003 * 109.47474 * 59.99707 * 1 2 3 26 26 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46941 * 240.00165 * 2 1 3 28 28 H 1.09000 * 109.47047 * 120.00007 * 2 1 3 29 29 H 1.08007 * 119.99654 * 0.04359 * 5 4 3 30 30 H 1.08003 * 119.91309 * 180.27596 * 6 5 4 31 31 H 1.08001 * 119.92387 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.01439 * 180.02562 * 8 7 6 33 33 H 0.96996 * 119.99802 * 204.77227 * 10 9 8 34 34 H 0.96994 * 120.00389 * 359.97438 * 13 11 10 35 35 H 1.09003 * 109.47024 * 299.99532 * 14 13 11 36 36 H 1.08996 * 109.47476 * 59.99533 * 14 13 11 37 37 H 1.09008 * 109.47196 * 299.99845 * 15 14 13 38 38 H 1.09004 * 109.47167 * 59.99727 * 15 14 13 39 39 H 0.97006 * 119.99718 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1999 0.4280 -0.0005 6 6 5.5703 0.6108 -0.0005 7 6 6.1012 1.8874 -0.0011 8 6 5.2645 2.9874 -0.0011 9 6 3.8886 2.8118 -0.0011 10 7 3.0379 3.9260 -0.0017 11 6 3.4714 5.1044 -0.4912 12 8 4.5613 5.1770 -1.0252 13 7 2.6967 6.2025 -0.3887 14 6 3.1676 7.4835 -0.9214 15 6 2.1062 8.5582 -0.6780 16 6 2.5908 9.8760 -1.2253 17 1 3.5589 9.9405 -1.6997 18 6 1.7979 10.9992 -1.1213 19 7 0.6188 10.9205 -0.5441 20 14 2.3990 12.6328 -1.7991 21 1 1.9737 12.7676 -3.2155 22 1 1.8201 13.7430 -1.0008 23 1 3.8809 12.6864 -1.7200 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7884 -0.5706 -0.0008 30 1 6.2279 -0.2460 -0.0050 31 1 7.1723 2.0255 -0.0007 32 1 5.6818 3.9835 -0.0020 33 1 2.1374 3.8487 0.3503 34 1 1.8271 6.1446 0.0369 35 1 4.0935 7.7668 -0.4207 36 1 3.3482 7.3876 -1.9920 37 1 1.1805 8.2747 -1.1789 38 1 1.9252 8.6543 0.3926 39 1 0.0611 11.7108 -0.4706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273214558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:39 Heat of formation + Delta-G solvation = -49.349881 kcal Electronic energy + Delta-G solvation = -20729.803668 eV Core-core repulsion = 17444.619444 eV Total energy + Delta-G solvation = -3285.184224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76543 -39.43049 -37.48232 -35.12298 -34.43877 -32.86105 -32.04460 -30.35315 -29.67129 -28.51021 -24.84855 -24.32829 -22.48360 -21.99440 -20.94622 -20.47333 -18.66110 -17.94021 -17.15845 -16.35200 -16.33979 -15.76247 -15.14424 -15.04918 -14.53385 -14.48106 -14.00798 -13.75912 -13.70420 -13.33521 -13.09006 -12.87096 -12.29272 -12.23821 -12.09234 -11.67344 -11.28356 -11.19789 -11.05349 -10.96570 -10.63489 -10.51426 -10.25800 -9.82597 -9.55842 -9.26349 -8.64899 -8.53592 -8.37181 -7.68775 -6.09206 -4.11979 1.31372 1.38279 2.83845 3.03024 3.30138 3.36308 3.37640 3.40809 3.88448 4.37912 4.55091 4.61919 4.62895 4.79698 4.91459 4.94045 5.12172 5.28046 5.28119 5.41368 5.48948 5.55709 5.73681 5.84845 6.05366 6.21635 6.29421 6.36776 6.48671 6.59760 6.75091 6.83574 6.93716 7.16983 7.33071 7.55148 7.62074 7.89577 8.21544 8.33474 8.83630 8.94425 9.52863 11.02461 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.003105 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.661549 B = 9014.400958 C = 9995.285137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.319 6.319 4 C 0.089 3.911 5 C -0.189 4.189 6 C -0.111 4.111 7 C -0.133 4.133 8 C -0.099 4.099 9 C 0.154 3.846 10 N -0.682 5.682 11 C 0.698 3.302 12 O -0.581 6.581 13 N -0.731 5.731 14 C 0.139 3.861 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.157 0.843 33 H 0.409 0.591 34 H 0.395 0.605 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -23.997 3.651 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.233 6.233 4 C 0.042 3.958 5 C -0.208 4.208 6 C -0.130 4.130 7 C -0.152 4.152 8 C -0.120 4.120 9 C 0.057 3.943 10 N -0.328 5.328 11 C 0.398 3.602 12 O -0.460 6.460 13 N -0.384 5.384 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.174 0.826 33 H 0.244 0.756 34 H 0.229 0.771 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.039 -23.535 3.203 23.945 hybrid contribution -0.647 0.556 -0.004 0.853 sum 2.392 -22.979 3.199 23.323 Atomic orbital electron populations 1.21781 0.92752 1.02780 1.03701 1.22734 0.95776 0.81982 1.01218 1.86011 1.18681 1.29283 1.89359 1.18604 0.82615 0.92494 1.02078 1.20958 0.94191 0.97171 1.08511 1.20859 0.94135 0.97312 1.00707 1.20994 0.99879 0.91913 1.02388 1.21444 0.90508 1.01421 0.98592 1.16943 0.90116 0.83164 1.04076 1.42564 1.17185 1.08081 1.65015 1.16041 0.84692 0.80153 0.79302 1.90847 1.21343 1.84625 1.49146 1.45582 1.21089 1.08735 1.63016 1.21666 0.99200 0.79791 0.97710 1.19336 0.93403 0.91967 0.97802 1.21042 1.03437 0.93070 1.38424 0.92179 1.24995 0.94857 0.99277 0.95170 1.69958 1.10069 1.29775 1.43516 0.86503 0.79115 0.82974 0.78915 1.20560 1.21182 1.19696 0.91455 0.91408 0.90466 0.92156 0.92177 0.85508 0.86040 0.85696 0.82597 0.75581 0.77111 0.92481 0.92540 0.95913 0.95884 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.45 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.65 9.55 -19.69 -0.19 -3.84 16 4 C 0.09 1.13 6.70 -39.08 -0.26 0.87 16 5 C -0.19 -2.00 9.04 -39.46 -0.36 -2.36 16 6 C -0.11 -1.15 10.04 -39.57 -0.40 -1.55 16 7 C -0.13 -1.58 10.04 -39.58 -0.40 -1.98 16 8 C -0.10 -1.46 8.72 -39.42 -0.34 -1.80 16 9 C 0.15 2.26 6.45 -83.48 -0.54 1.72 16 10 N -0.68 -10.08 5.30 -14.10 -0.07 -10.16 16 11 C 0.70 12.57 8.37 -86.92 -0.73 11.84 16 12 O -0.58 -12.24 13.51 5.29 0.07 -12.17 16 13 N -0.73 -13.06 5.56 -65.23 -0.36 -13.42 16 14 C 0.14 2.97 5.61 -4.04 -0.02 2.95 16 15 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 20 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.13 1.01 6.30 -52.48 -0.33 0.68 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.16 2.61 5.79 -52.49 -0.30 2.30 16 33 H 0.41 5.07 8.36 -40.82 -0.34 4.72 16 34 H 0.40 6.09 8.49 -40.82 -0.35 5.74 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -32.23 331.85 -8.32 -40.54 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.46 Total: 6.36 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.01 Total: -3.30 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.30 Total: -48.98 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.12 Total: -16.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.23 -8.32 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273214558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.808 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds