Wall clock time and date at job start Tue Mar 31 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46805 * 2 1 4 4 C 1.35983 * 116.99815 * 180.02562 * 3 2 1 5 5 C 1.38544 * 120.08087 * 359.97438 * 4 3 2 6 6 C 1.38253 * 120.01451 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.17699 * 359.97438 * 6 5 4 8 8 C 1.38202 * 120.16221 * 0.02562 * 7 6 5 9 9 C 1.38707 * 119.98441 * 359.97438 * 8 7 6 10 10 N 1.40176 * 120.08943 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99835 * 24.76859 * 10 9 8 12 12 O 1.21591 * 120.00277 * 5.63912 * 11 10 9 13 13 N 1.34777 * 119.99684 * 185.64072 * 11 10 9 14 14 C 1.46502 * 119.99906 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47191 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47485 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99801 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00315 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99765 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46892 * 90.00283 * 20 18 16 22 22 H 1.48490 * 109.47233 * 210.00205 * 20 18 16 23 23 H 1.48498 * 109.47221 * 330.00691 * 20 18 16 24 24 H 1.08996 * 109.47301 * 299.99937 * 1 2 3 25 25 H 1.09003 * 109.47474 * 59.99707 * 1 2 3 26 26 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46941 * 240.00165 * 2 1 3 28 28 H 1.09000 * 109.47047 * 120.00007 * 2 1 3 29 29 H 1.08007 * 119.99654 * 0.04359 * 5 4 3 30 30 H 1.08003 * 119.91309 * 180.27596 * 6 5 4 31 31 H 1.08001 * 119.92387 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.01439 * 180.02562 * 8 7 6 33 33 H 0.96996 * 119.99802 * 204.77227 * 10 9 8 34 34 H 0.96994 * 120.00389 * 359.97438 * 13 11 10 35 35 H 1.09003 * 109.47024 * 299.99532 * 14 13 11 36 36 H 1.08996 * 109.47476 * 59.99533 * 14 13 11 37 37 H 1.09008 * 109.47196 * 299.99845 * 15 14 13 38 38 H 1.09004 * 109.47167 * 59.99727 * 15 14 13 39 39 H 0.97006 * 119.99718 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1999 0.4280 -0.0005 6 6 5.5703 0.6108 -0.0005 7 6 6.1012 1.8874 -0.0011 8 6 5.2645 2.9874 -0.0011 9 6 3.8886 2.8118 -0.0011 10 7 3.0379 3.9260 -0.0017 11 6 3.4714 5.1044 -0.4912 12 8 4.5613 5.1770 -1.0252 13 7 2.6967 6.2025 -0.3887 14 6 3.1676 7.4835 -0.9214 15 6 2.1062 8.5582 -0.6780 16 6 2.5908 9.8760 -1.2253 17 1 3.5589 9.9405 -1.6997 18 6 1.7979 10.9992 -1.1213 19 7 0.6188 10.9205 -0.5441 20 14 2.3990 12.6328 -1.7991 21 1 1.9737 12.7676 -3.2155 22 1 1.8201 13.7430 -1.0008 23 1 3.8809 12.6864 -1.7200 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7884 -0.5706 -0.0008 30 1 6.2279 -0.2460 -0.0050 31 1 7.1723 2.0255 -0.0007 32 1 5.6818 3.9835 -0.0020 33 1 2.1374 3.8487 0.3503 34 1 1.8271 6.1446 0.0369 35 1 4.0935 7.7668 -0.4207 36 1 3.3482 7.3876 -1.9920 37 1 1.1805 8.2747 -1.1789 38 1 1.9252 8.6543 0.3926 39 1 0.0611 11.7108 -0.4706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273214558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:38 Heat of formation + Delta-G solvation = -70.710302 kcal Electronic energy + Delta-G solvation = -20730.729925 eV Core-core repulsion = 17444.619444 eV Total energy + Delta-G solvation = -3286.110481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88863 -40.57913 -38.41830 -36.72821 -35.76796 -34.83964 -32.69445 -31.83171 -30.83679 -29.70225 -26.72755 -25.13938 -23.70923 -22.88312 -22.66796 -21.77090 -19.77212 -19.12414 -18.46950 -18.15020 -17.13809 -16.86138 -16.53752 -16.41153 -16.18789 -15.63407 -15.25426 -15.17525 -14.90829 -14.31321 -14.28859 -14.19084 -13.36640 -13.22880 -13.10678 -12.96057 -12.86765 -12.55289 -12.51031 -12.26928 -12.05180 -11.66710 -11.61967 -11.57007 -11.43456 -11.02489 -10.60621 -10.10586 -9.53114 -8.72188 -8.24088 -6.34463 0.33978 0.45534 1.41975 1.42915 1.53090 1.58685 2.01974 2.21866 2.41319 2.88173 3.10918 3.20647 3.87509 4.01807 4.10489 4.24803 4.25390 4.40437 4.43566 4.50048 4.51651 4.57910 4.73284 4.85178 4.96456 4.97443 5.11752 5.24054 5.26916 5.35088 5.47863 5.52621 5.58110 5.64714 5.77663 5.88654 5.95205 6.16067 6.46376 6.78569 6.95231 7.34795 7.43272 8.87934 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.003105 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.661549 B = 9014.400958 C = 9995.285137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.335 6.335 4 C 0.090 3.910 5 C -0.185 4.185 6 C -0.099 4.099 7 C -0.140 4.140 8 C -0.122 4.122 9 C 0.117 3.883 10 N -0.668 5.668 11 C 0.698 3.302 12 O -0.614 6.614 13 N -0.726 5.726 14 C 0.160 3.840 15 C 0.023 3.977 16 C -0.546 4.546 17 H 0.060 0.940 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.419 0.581 34 H 0.408 0.592 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -26.112 3.623 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.249 6.249 4 C 0.042 3.958 5 C -0.204 4.204 6 C -0.117 4.117 7 C -0.158 4.158 8 C -0.142 4.142 9 C 0.021 3.979 10 N -0.315 5.315 11 C 0.399 3.601 12 O -0.495 6.495 13 N -0.381 5.381 14 C 0.036 3.964 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.190 1.190 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.256 0.744 34 H 0.243 0.757 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.327 -25.706 3.198 26.117 hybrid contribution -0.761 1.041 0.036 1.290 sum 2.566 -24.664 3.234 25.007 Atomic orbital electron populations 1.21815 0.91899 1.04146 1.02962 1.23063 0.96511 0.80508 1.02537 1.86006 1.18053 1.31726 1.89161 1.18693 0.83563 0.92099 1.01443 1.21382 0.94165 0.97974 1.06904 1.21293 0.94658 0.97600 0.98175 1.21240 1.00561 0.91938 1.02107 1.21341 0.91243 1.01162 1.00489 1.17204 0.90209 0.83816 1.06635 1.42311 1.17705 1.07226 1.64294 1.16081 0.84114 0.80797 0.79148 1.90829 1.22745 1.85287 1.50640 1.45261 1.21724 1.07825 1.63250 1.21153 0.97677 0.80462 0.97096 1.19137 0.93575 0.92278 0.96428 1.21459 1.03691 0.94560 1.38754 0.92164 1.25875 0.94942 1.03044 0.95333 1.70062 1.11148 1.30986 1.44449 0.85432 0.78825 0.78326 0.78395 1.19774 1.20516 1.18999 0.91902 0.92452 0.88028 0.91046 0.90457 0.82253 0.82382 0.83978 0.85509 0.74371 0.75668 0.93304 0.93515 0.97311 0.97227 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.62 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.16 9.55 -93.36 -0.89 -8.05 16 4 C 0.09 2.13 6.70 22.59 0.15 2.28 16 5 C -0.19 -3.34 9.04 22.35 0.20 -3.14 16 6 C -0.10 -1.72 10.04 22.28 0.22 -1.50 16 7 C -0.14 -3.16 10.04 22.27 0.22 -2.93 16 8 C -0.12 -3.67 8.72 22.37 0.20 -3.47 16 9 C 0.12 3.45 6.45 38.17 0.25 3.70 16 10 N -0.67 -20.20 5.30 -316.80 -1.68 -21.88 16 11 C 0.70 26.00 8.37 179.06 1.50 27.50 16 12 O -0.61 -26.99 13.51 -4.00 -0.05 -27.05 16 13 N -0.73 -26.71 5.56 -478.54 -2.66 -29.37 16 14 C 0.16 7.06 5.61 86.38 0.48 7.55 16 15 C 0.02 1.19 5.09 29.85 0.15 1.35 16 16 C -0.55 -30.77 9.11 25.60 0.23 -30.53 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.01 0.38 5.46 84.65 0.46 0.85 16 19 N -0.93 -54.68 13.29 21.44 0.28 -54.40 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 28 H 0.08 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.16 1.79 6.30 -2.91 -0.02 1.77 16 30 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.13 4.53 5.79 -2.91 -0.02 4.51 16 33 H 0.42 10.52 8.36 -92.71 -0.78 9.74 16 34 H 0.41 12.86 8.49 -92.71 -0.79 12.07 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -70.49 331.85 1.74 -68.74 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.49 Total: 24.29 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.21 Total: 1.79 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.05 Total: -105.65 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.95 Total: -35.10 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.49 1.74 -68.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273214558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.967 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds