Wall clock time and date at job start Tue Mar 31 2020 01:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00116 * 2 1 4 4 C 1.50700 * 109.47033 * 269.99493 * 3 2 1 5 5 C 1.38158 * 120.02768 * 259.99936 * 4 3 2 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 3 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 79.95997 * 4 3 2 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 3 11 11 C 1.34772 * 119.99875 * 179.97438 * 2 1 3 12 12 O 1.21590 * 120.00141 * 180.02562 * 11 2 1 13 13 N 1.34780 * 120.00153 * 0.02562 * 11 2 1 14 14 C 1.46500 * 119.99909 * 179.97438 * 13 11 2 15 15 C 1.53008 * 109.46841 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46770 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99891 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99758 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00407 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99994 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47596 * 89.99599 * 20 18 16 22 22 H 1.48505 * 109.46965 * 210.00106 * 20 18 16 23 23 H 1.48508 * 109.46917 * 329.99264 * 20 18 16 24 24 H 1.09000 * 109.46586 * 89.99717 * 1 2 3 25 25 H 1.08996 * 109.47395 * 209.99874 * 1 2 3 26 26 H 1.09005 * 109.46851 * 330.00804 * 1 2 3 27 27 H 1.09000 * 109.46904 * 149.99752 * 3 2 1 28 28 H 1.09002 * 109.47269 * 29.99719 * 3 2 1 29 29 H 1.08004 * 119.97750 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 33 33 H 0.96701 * 113.99785 * 269.95941 * 10 9 4 34 34 H 0.96990 * 119.99589 * 359.97438 * 13 11 2 35 35 H 1.09007 * 109.47047 * 299.99333 * 14 13 11 36 36 H 1.09003 * 109.47412 * 59.99584 * 14 13 11 37 37 H 1.08993 * 109.46821 * 299.99830 * 15 14 13 38 38 H 1.08997 * 109.46684 * 59.99938 * 15 14 13 39 39 H 0.96996 * 120.00283 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6822 1.4838 -2.0033 6 6 3.9135 1.8831 -3.3065 7 6 2.9114 2.5028 -4.0304 8 6 1.6763 2.7239 -3.4530 9 6 1.4417 2.3244 -2.1451 10 8 0.2277 2.5418 -1.5743 11 6 2.1388 -1.1672 0.0005 12 8 3.3547 -1.1672 0.0010 13 7 1.4649 -2.3344 0.0005 14 6 2.1975 -3.6031 0.0005 15 6 1.2032 -4.7661 0.0012 16 6 1.9567 -6.0712 0.0005 17 1 3.0367 -6.0711 -0.0007 18 6 1.2673 -7.2652 0.0015 19 7 1.9248 -8.4042 0.0014 20 14 -0.6007 -7.2652 0.0028 21 1 -1.0968 -7.2656 -1.3967 22 1 -1.0952 -8.4774 0.7038 23 1 -1.0952 -6.0524 0.7030 24 1 -0.3632 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 3.1499 1.1384 0.5139 28 1 1.6085 2.0285 0.5138 29 1 4.4666 1.0004 -1.4399 30 1 4.8784 1.7107 -3.7599 31 1 3.0944 2.8134 -5.0485 32 1 0.8954 3.2119 -4.0173 33 1 -0.4009 1.8176 -1.6991 34 1 0.4950 -2.3343 0.0005 35 1 2.8241 -3.6609 -0.8896 36 1 2.8242 -3.6609 0.8905 37 1 0.5769 -4.7081 0.8914 38 1 0.5762 -4.7084 -0.8886 39 1 1.4398 -9.2442 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273322552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:15 Heat of formation + Delta-G solvation = -44.158206 kcal Electronic energy + Delta-G solvation = -21321.172290 eV Core-core repulsion = 18036.213194 eV Total energy + Delta-G solvation = -3284.959096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47103 -39.40763 -36.84309 -35.70758 -34.90816 -32.90586 -31.87435 -30.13732 -29.81621 -27.33571 -26.12524 -24.30837 -22.74631 -21.78515 -20.81663 -19.70951 -18.57230 -17.77915 -16.92834 -16.64983 -16.11881 -15.82301 -15.51195 -15.08170 -14.34225 -14.21371 -13.91884 -13.84057 -13.68668 -13.23679 -12.92089 -12.80991 -12.59710 -12.32524 -12.23263 -12.03226 -11.49428 -11.39994 -11.21259 -10.67547 -10.39398 -10.24963 -9.98163 -9.78849 -9.33357 -9.03394 -8.89752 -8.71676 -8.62384 -8.34301 -6.11241 -4.11247 1.02760 1.17105 2.85151 3.24323 3.31758 3.33061 3.46370 3.50499 4.03894 4.23782 4.37119 4.64424 4.70546 4.86507 4.92801 5.09958 5.17548 5.21627 5.25391 5.42171 5.47920 5.56532 5.75464 5.83984 6.04171 6.17536 6.24604 6.31226 6.39001 6.45284 6.58035 6.65236 6.81054 6.99028 7.23129 7.25066 7.39113 7.67157 8.20877 8.45062 8.87004 8.93770 9.48858 11.01861 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.003607 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.581814 B = 7760.410239 C = 8022.499022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.634 5.634 3 C 0.177 3.823 4 C -0.128 4.128 5 C -0.076 4.076 6 C -0.131 4.131 7 C -0.104 4.104 8 C -0.152 4.152 9 C 0.114 3.886 10 O -0.498 6.498 11 C 0.701 3.299 12 O -0.589 6.589 13 N -0.741 5.741 14 C 0.147 3.853 15 C -0.021 4.021 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.267 1.267 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.385 0.615 34 H 0.391 0.609 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 23.629 -4.407 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.372 5.372 3 C 0.054 3.946 4 C -0.130 4.130 5 C -0.095 4.095 6 C -0.150 4.150 7 C -0.122 4.122 8 C -0.171 4.171 9 C 0.069 3.931 10 O -0.309 6.309 11 C 0.403 3.597 12 O -0.467 6.467 13 N -0.396 5.396 14 C 0.025 3.975 15 C -0.059 4.059 16 C -0.560 4.560 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.242 0.758 34 H 0.225 0.775 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.576 23.902 -4.199 24.530 hybrid contribution -1.820 -0.648 -0.318 1.958 sum -5.396 23.254 -4.518 24.296 Atomic orbital electron populations 1.21777 0.80365 1.03421 1.00998 1.47065 1.05934 1.04778 1.79436 1.20083 0.98521 0.83981 0.91997 1.20640 0.94546 0.99584 0.98238 1.21170 0.96584 0.96750 0.94991 1.21226 0.99567 0.99438 0.94723 1.21044 0.92846 0.98521 0.99791 1.21368 0.98472 1.02864 0.94381 1.18301 0.85915 0.97915 0.90940 1.84793 1.21993 1.46561 1.77592 1.15979 0.85474 0.80349 0.77943 1.90880 1.11520 1.86185 1.58078 1.45672 1.09796 1.05462 1.78703 1.21382 0.95069 0.79587 1.01486 1.19789 0.95477 0.93918 0.96698 1.20916 0.95293 0.88243 1.51575 0.90578 1.24997 0.98454 0.95420 0.94399 1.69900 1.35858 0.97467 1.50460 0.86752 0.86117 0.77725 0.78467 1.20251 1.21264 1.19126 0.93530 0.91071 0.90377 0.88926 0.89401 0.84903 0.85728 0.85787 0.85648 0.75831 0.77467 0.92194 0.92123 0.96083 0.96563 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 8.87 59.85 0.53 1.19 16 2 N -0.63 -7.95 2.86 -188.73 -0.54 -8.49 16 3 C 0.18 2.07 5.25 -5.19 -0.03 2.04 16 4 C -0.13 -1.53 5.47 -104.48 -0.57 -2.10 16 5 C -0.08 -0.94 9.66 -39.61 -0.38 -1.32 16 6 C -0.13 -1.40 10.04 -39.56 -0.40 -1.80 16 7 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 8 C -0.15 -1.52 9.99 -39.43 -0.39 -1.92 16 9 C 0.11 1.24 6.68 -39.21 -0.26 0.97 16 10 O -0.50 -4.54 12.16 -19.43 -0.24 -4.78 16 11 C 0.70 11.91 8.28 -86.92 -0.72 11.19 16 12 O -0.59 -12.09 15.92 5.29 0.08 -12.00 16 13 N -0.74 -12.54 5.42 -65.22 -0.35 -12.90 16 14 C 0.15 3.06 5.61 -4.04 -0.02 3.04 16 15 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 16 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 17 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 20 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 24 H 0.05 0.33 6.88 -51.93 -0.36 -0.03 16 25 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 26 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 27 H 0.09 1.19 7.28 -51.93 -0.38 0.81 16 28 H 0.09 0.85 7.61 -51.93 -0.39 0.46 16 29 H 0.13 1.72 8.04 -52.48 -0.42 1.30 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.38 2.31 6.87 45.56 0.31 2.63 16 34 H 0.39 5.54 6.20 -40.82 -0.25 5.28 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 38 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -33.95 326.39 -7.91 -41.86 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.70 Total: 5.46 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.19 Total: -3.79 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.12 Total: -47.94 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.15 Total: -16.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.95 -7.91 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273322552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.296 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds