Wall clock time and date at job start Tue Mar 31 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00116 * 2 1 4 4 C 1.50700 * 109.47033 * 269.99493 * 3 2 1 5 5 C 1.38158 * 120.02768 * 259.99936 * 4 3 2 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 3 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 79.95997 * 4 3 2 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 3 11 11 C 1.34772 * 119.99875 * 179.97438 * 2 1 3 12 12 O 1.21590 * 120.00141 * 180.02562 * 11 2 1 13 13 N 1.34780 * 120.00153 * 0.02562 * 11 2 1 14 14 C 1.46500 * 119.99909 * 179.97438 * 13 11 2 15 15 C 1.53008 * 109.46841 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46770 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99891 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99758 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00407 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99994 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47596 * 89.99599 * 20 18 16 22 22 H 1.48505 * 109.46965 * 210.00106 * 20 18 16 23 23 H 1.48508 * 109.46917 * 329.99264 * 20 18 16 24 24 H 1.09000 * 109.46586 * 89.99717 * 1 2 3 25 25 H 1.08996 * 109.47395 * 209.99874 * 1 2 3 26 26 H 1.09005 * 109.46851 * 330.00804 * 1 2 3 27 27 H 1.09000 * 109.46904 * 149.99752 * 3 2 1 28 28 H 1.09002 * 109.47269 * 29.99719 * 3 2 1 29 29 H 1.08004 * 119.97750 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 33 33 H 0.96701 * 113.99785 * 269.95941 * 10 9 4 34 34 H 0.96990 * 119.99589 * 359.97438 * 13 11 2 35 35 H 1.09007 * 109.47047 * 299.99333 * 14 13 11 36 36 H 1.09003 * 109.47412 * 59.99584 * 14 13 11 37 37 H 1.08993 * 109.46821 * 299.99830 * 15 14 13 38 38 H 1.08997 * 109.46684 * 59.99938 * 15 14 13 39 39 H 0.96996 * 120.00283 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6822 1.4838 -2.0033 6 6 3.9135 1.8831 -3.3065 7 6 2.9114 2.5028 -4.0304 8 6 1.6763 2.7239 -3.4530 9 6 1.4417 2.3244 -2.1451 10 8 0.2277 2.5418 -1.5743 11 6 2.1388 -1.1672 0.0005 12 8 3.3547 -1.1672 0.0010 13 7 1.4649 -2.3344 0.0005 14 6 2.1975 -3.6031 0.0005 15 6 1.2032 -4.7661 0.0012 16 6 1.9567 -6.0712 0.0005 17 1 3.0367 -6.0711 -0.0007 18 6 1.2673 -7.2652 0.0015 19 7 1.9248 -8.4042 0.0014 20 14 -0.6007 -7.2652 0.0028 21 1 -1.0968 -7.2656 -1.3967 22 1 -1.0952 -8.4774 0.7038 23 1 -1.0952 -6.0524 0.7030 24 1 -0.3632 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 3.1499 1.1384 0.5139 28 1 1.6085 2.0285 0.5138 29 1 4.4666 1.0004 -1.4399 30 1 4.8784 1.7107 -3.7599 31 1 3.0944 2.8134 -5.0485 32 1 0.8954 3.2119 -4.0173 33 1 -0.4009 1.8176 -1.6991 34 1 0.4950 -2.3343 0.0005 35 1 2.8241 -3.6609 -0.8896 36 1 2.8242 -3.6609 0.8905 37 1 0.5769 -4.7081 0.8914 38 1 0.5762 -4.7084 -0.8886 39 1 1.4398 -9.2442 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273322552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:14 Heat of formation + Delta-G solvation = -68.650684 kcal Electronic energy + Delta-G solvation = -21322.234363 eV Core-core repulsion = 18036.213194 eV Total energy + Delta-G solvation = -3286.021170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49764 -40.45396 -37.57247 -36.96639 -36.38965 -34.82576 -32.97437 -31.65072 -30.77451 -28.13721 -27.48114 -25.84880 -23.54293 -22.88453 -22.46963 -20.97808 -19.38433 -19.00768 -18.85759 -17.51690 -17.34416 -16.67418 -16.56863 -16.26579 -16.03202 -15.50935 -15.28289 -14.97221 -14.80797 -14.57643 -14.23584 -13.89498 -13.55475 -13.32685 -13.13327 -13.07266 -13.00455 -12.78225 -12.25878 -12.16279 -12.14549 -11.75334 -11.52492 -11.42887 -11.22760 -10.78332 -10.18755 -9.87220 -9.64973 -9.45069 -8.29366 -6.36948 0.22734 0.35237 1.39473 1.42590 1.53762 1.72213 2.14544 2.37637 2.68574 3.05613 3.08704 3.32524 3.82169 3.86918 4.12902 4.23295 4.28850 4.35062 4.44185 4.48962 4.53768 4.65499 4.72238 4.75066 4.82776 4.98607 5.03686 5.13203 5.39969 5.41142 5.44175 5.47358 5.52008 5.57648 5.67131 5.89795 5.92660 6.23441 6.70149 6.77153 7.00092 7.27575 7.57273 8.87559 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.003607 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.581814 B = 7760.410239 C = 8022.499022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.623 5.623 3 C 0.179 3.821 4 C -0.144 4.144 5 C -0.100 4.100 6 C -0.142 4.142 7 C -0.102 4.102 8 C -0.156 4.156 9 C 0.115 3.885 10 O -0.497 6.497 11 C 0.695 3.305 12 O -0.633 6.633 13 N -0.732 5.732 14 C 0.165 3.835 15 C -0.010 4.010 16 C -0.540 4.540 17 H 0.027 0.973 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.235 1.235 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.400 0.600 34 H 0.408 0.592 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.035 0.965 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 25.822 -5.176 27.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.360 5.360 3 C 0.056 3.944 4 C -0.146 4.146 5 C -0.119 4.119 6 C -0.160 4.160 7 C -0.120 4.120 8 C -0.174 4.174 9 C 0.070 3.930 10 O -0.311 6.311 11 C 0.396 3.604 12 O -0.515 6.515 13 N -0.389 5.389 14 C 0.040 3.960 15 C -0.047 4.047 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.158 1.158 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.260 0.740 34 H 0.246 0.754 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.395 26.154 -4.967 27.629 hybrid contribution -0.560 -1.276 -0.097 1.397 sum -7.955 24.877 -5.064 26.605 Atomic orbital electron populations 1.22138 0.77351 1.05107 1.02913 1.47071 1.07726 1.03380 1.77793 1.20133 0.98021 0.83905 0.92320 1.20664 0.94875 1.00667 0.98367 1.21181 0.96776 0.97978 0.95975 1.21439 1.00731 0.99594 0.94239 1.21381 0.92336 0.97403 1.00859 1.21689 0.99109 1.02393 0.94234 1.18329 0.86200 0.97326 0.91136 1.84759 1.21499 1.47350 1.77455 1.16177 0.85056 0.81355 0.77771 1.90856 1.13759 1.86975 1.59884 1.45272 1.10412 1.04177 1.79004 1.20860 0.94491 0.81063 0.99561 1.19625 0.95418 0.91703 0.97998 1.21246 0.93734 0.91217 1.51626 0.95419 1.26094 1.05047 0.94560 0.93613 1.70077 1.38604 0.98486 1.51956 0.85524 0.78015 0.78888 0.79348 1.18949 1.21262 1.15831 0.91425 0.90540 0.87642 0.91171 0.86922 0.87025 0.84562 0.83099 0.83429 0.74045 0.75427 0.94361 0.94184 0.94441 0.94696 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 8.87 127.77 1.13 2.01 16 2 N -0.62 -14.59 2.86 -869.29 -2.48 -17.07 16 3 C 0.18 4.02 5.25 85.63 0.45 4.47 16 4 C -0.14 -3.31 5.47 -19.77 -0.11 -3.42 16 5 C -0.10 -2.54 9.66 22.25 0.22 -2.32 16 6 C -0.14 -2.96 10.04 22.28 0.22 -2.73 16 7 C -0.10 -1.74 10.04 22.25 0.22 -1.52 16 8 C -0.16 -2.67 9.99 22.37 0.22 -2.45 16 9 C 0.12 2.21 6.68 22.51 0.15 2.36 16 10 O -0.50 -7.25 12.16 -92.44 -1.12 -8.37 16 11 C 0.70 23.41 8.28 179.05 1.48 24.90 16 12 O -0.63 -27.05 15.92 -4.00 -0.06 -27.12 16 13 N -0.73 -23.91 5.42 -478.51 -2.59 -26.51 16 14 C 0.16 6.93 5.61 86.38 0.48 7.41 16 15 C -0.01 -0.43 4.16 29.85 0.12 -0.30 16 16 C -0.54 -31.01 9.66 25.60 0.25 -30.76 16 17 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 18 C 0.00 0.22 5.47 84.65 0.46 0.69 16 19 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 20 Si 0.96 41.96 27.47 68.60 1.88 43.84 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 24 H 0.07 0.65 6.88 -2.39 -0.02 0.64 16 25 H 0.08 0.96 6.36 -2.39 -0.02 0.95 16 26 H 0.11 0.87 7.89 -2.38 -0.02 0.85 16 27 H 0.07 1.88 7.28 -2.39 -0.02 1.87 16 28 H 0.11 1.94 7.61 -2.39 -0.02 1.92 16 29 H 0.11 3.19 8.04 -2.91 -0.02 3.17 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.40 3.07 6.87 -74.06 -0.51 2.56 16 34 H 0.41 10.36 6.20 -92.72 -0.58 9.78 16 35 H 0.04 1.75 8.14 -2.38 -0.02 1.74 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 38 H 0.03 1.44 7.57 -2.39 -0.02 1.43 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.10 326.39 1.16 -75.94 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.07 Total: 20.10 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 5.31 Total: -1.67 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.78 Total: -102.72 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.19 Total: -35.49 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Total: -77.10 1.16 -75.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273322552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.287 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds