Wall clock time and date at job start Tue Mar 31 2020 01:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38265 * 119.94309 * 269.72306 * 4 3 2 6 6 C 1.38150 * 120.05175 * 179.72628 * 5 4 3 7 7 C 1.38735 * 119.94309 * 0.57751 * 6 5 4 8 8 O 1.35897 * 120.05289 * 179.68086 * 7 6 5 9 9 C 1.38733 * 119.88979 * 359.69494 * 7 6 5 10 10 C 1.38148 * 119.94359 * 0.02562 * 9 7 6 11 11 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 12 12 O 1.21593 * 120.00167 * 179.97438 * 11 2 1 13 13 N 1.34780 * 120.00532 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00367 * 179.97438 * 13 11 2 15 15 C 1.52993 * 109.47399 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47458 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00195 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46968 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46802 * 120.00386 * 20 18 16 23 23 H 1.48504 * 109.46869 * 240.00100 * 20 18 16 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 1.07992 * 119.97344 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.02752 * 180.24938 * 6 5 4 31 31 H 0.96697 * 114.00131 * 270.01220 * 8 7 6 32 32 H 1.08003 * 120.02962 * 179.97438 * 9 7 6 33 33 H 1.07999 * 119.97074 * 179.97438 * 10 9 7 34 34 H 0.97000 * 119.99501 * 0.02562 * 13 11 2 35 35 H 1.09004 * 109.47298 * 300.00557 * 14 13 11 36 36 H 1.09000 * 109.47160 * 60.00094 * 14 13 11 37 37 H 1.09004 * 109.47275 * 300.00478 * 15 14 13 38 38 H 1.09000 * 109.47397 * 60.00196 * 15 14 13 39 39 H 0.97006 * 120.00061 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5289 2.5066 2.0696 6 6 1.7542 2.9020 3.3740 7 6 2.9102 2.5026 4.0289 8 8 3.1371 2.8956 5.3099 9 6 3.8342 1.7015 3.3738 10 6 3.6015 1.3041 2.0713 11 6 2.1388 -1.1672 -0.0005 12 8 3.3548 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6032 -0.0017 15 6 1.2032 -4.7660 -0.0021 16 6 1.9566 -6.0712 -0.0026 17 1 3.0366 -6.0713 -0.0022 18 6 1.2672 -7.2652 -0.0025 19 7 -0.0479 -7.2652 -0.0024 20 14 2.2012 -8.8830 -0.0039 21 1 3.6611 -8.6117 -0.0043 22 1 1.8433 -9.6621 1.2086 23 1 1.8414 -9.6612 -1.2164 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 0.6318 2.8217 1.5576 30 1 1.0335 3.5259 3.8818 31 1 3.6189 3.7305 5.3856 32 1 4.7351 1.3896 3.8813 33 1 4.3208 0.6809 1.5608 34 1 0.4949 -2.3344 -0.0005 35 1 2.8235 -3.6605 -0.8921 36 1 2.8247 -3.6613 0.8878 37 1 0.5768 -4.7089 0.8882 38 1 0.5762 -4.7078 -0.8918 39 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273336134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:20 Heat of formation + Delta-G solvation = -49.532154 kcal Electronic energy + Delta-G solvation = -20888.619464 eV Core-core repulsion = 17603.427336 eV Total energy + Delta-G solvation = -3285.192128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.22833 -39.44429 -37.15995 -35.32029 -34.77674 -32.85047 -31.11648 -31.06820 -29.31163 -27.11264 -25.74486 -24.19424 -22.90016 -21.78928 -20.93443 -19.63166 -18.57937 -17.76159 -16.55831 -16.33803 -15.97754 -15.73073 -15.53583 -14.96223 -14.49478 -14.07019 -13.91309 -13.65340 -13.47027 -13.43031 -12.75490 -12.61194 -12.42467 -12.28318 -12.17924 -11.80292 -11.54604 -11.12851 -11.03341 -10.61011 -10.59069 -10.30832 -9.89297 -9.54625 -9.23703 -9.09866 -8.77634 -8.64199 -8.45340 -8.19128 -6.07853 -4.10232 1.02186 1.24603 2.92575 3.29735 3.37252 3.42714 3.55269 3.60284 4.03250 4.32082 4.47513 4.69309 4.76294 4.85071 5.04191 5.10945 5.25525 5.29409 5.39111 5.51266 5.62086 5.64305 5.73179 5.91948 6.15101 6.25406 6.29641 6.42092 6.49641 6.58353 6.69871 6.79479 7.02732 7.16112 7.44998 7.57560 7.65016 7.91502 8.26349 8.39006 8.94107 9.00079 9.54487 11.03906 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.003207 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.117379 B = 8728.431809 C = 9181.847903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.635 5.635 3 C 0.175 3.825 4 C -0.113 4.113 5 C -0.091 4.091 6 C -0.152 4.152 7 C 0.102 3.898 8 O -0.501 6.501 9 C -0.148 4.148 10 C -0.074 4.074 11 C 0.701 3.299 12 O -0.594 6.594 13 N -0.738 5.738 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.388 0.612 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 23.456 3.215 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.373 5.373 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.170 4.170 7 C 0.058 3.942 8 O -0.311 6.311 9 C -0.167 4.167 10 C -0.093 4.093 11 C 0.403 3.597 12 O -0.473 6.473 13 N -0.392 5.392 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.243 0.757 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.228 0.772 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.404 22.760 3.329 23.045 hybrid contribution -0.007 -0.533 0.101 0.543 sum 1.396 22.226 3.430 22.533 Atomic orbital electron populations 1.21721 0.80016 1.02934 1.01700 1.47050 1.06124 1.04687 1.79411 1.20144 0.98477 0.84185 0.92072 1.20389 0.94993 0.98240 0.97855 1.20907 0.98589 0.97419 0.94085 1.21345 0.98184 1.02521 0.94990 1.18524 0.94214 0.97699 0.83770 1.84838 1.79123 1.44286 1.22834 1.21479 0.99910 1.00213 0.95062 1.21194 0.97216 0.97046 0.93829 1.15992 0.85439 0.80417 0.77884 1.90852 1.11599 1.86288 1.58587 1.45687 1.09984 1.05333 1.78217 1.21588 0.95654 0.80476 1.00611 1.19325 0.94269 0.91137 0.97749 1.21092 0.93306 0.90337 1.51058 0.92164 1.25000 0.94895 0.99416 0.95034 1.69968 1.06089 1.26724 1.50586 0.86456 0.80194 0.83335 0.77585 1.19559 1.20953 1.20953 0.92868 0.91093 0.91092 0.88898 0.89943 0.85798 0.85642 0.75695 0.85488 0.84625 0.77217 0.92785 0.92818 0.96021 0.96019 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.25 59.85 0.61 1.40 16 2 N -0.63 -8.45 2.86 -188.73 -0.54 -8.99 16 3 C 0.17 1.96 5.57 -5.19 -0.03 1.93 16 4 C -0.11 -1.31 5.46 -104.60 -0.57 -1.89 16 5 C -0.09 -0.90 9.69 -39.60 -0.38 -1.29 16 6 C -0.15 -1.54 9.99 -39.43 -0.39 -1.94 16 7 C 0.10 1.15 6.70 -39.22 -0.26 0.89 16 8 O -0.50 -4.96 13.50 -19.42 -0.26 -5.23 16 9 C -0.15 -1.78 9.99 -39.43 -0.39 -2.17 16 10 C -0.07 -0.96 9.69 -39.60 -0.38 -1.34 16 11 C 0.70 12.55 8.28 -86.92 -0.72 11.83 16 12 O -0.59 -12.48 15.44 5.28 0.08 -12.40 16 13 N -0.74 -13.56 5.42 -65.23 -0.35 -13.91 16 14 C 0.14 3.06 5.61 -4.05 -0.02 3.04 16 15 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 17 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 26 H 0.07 0.70 6.36 -51.93 -0.33 0.37 16 27 H 0.09 1.16 7.36 -51.93 -0.38 0.77 16 28 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.39 1.78 9.06 45.56 0.41 2.20 16 32 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.14 1.93 7.57 -52.49 -0.40 1.53 16 34 H 0.39 6.35 6.20 -40.82 -0.25 6.09 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -34.28 335.49 -8.09 -42.38 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.69 Total: 4.83 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.10 Total: -2.70 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.16 Total: -48.47 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.18 Total: -17.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.28 -8.09 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273336134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.156 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds