Wall clock time and date at job start Tue Mar 31 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38265 * 119.94309 * 269.72306 * 4 3 2 6 6 C 1.38150 * 120.05175 * 179.72628 * 5 4 3 7 7 C 1.38735 * 119.94309 * 0.57751 * 6 5 4 8 8 O 1.35897 * 120.05289 * 179.68086 * 7 6 5 9 9 C 1.38733 * 119.88979 * 359.69494 * 7 6 5 10 10 C 1.38148 * 119.94359 * 0.02562 * 9 7 6 11 11 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 12 12 O 1.21593 * 120.00167 * 179.97438 * 11 2 1 13 13 N 1.34780 * 120.00532 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00367 * 179.97438 * 13 11 2 15 15 C 1.52993 * 109.47399 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47458 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00195 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99793 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46968 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46802 * 120.00386 * 20 18 16 23 23 H 1.48504 * 109.46869 * 240.00100 * 20 18 16 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 1.07992 * 119.97344 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.02752 * 180.24938 * 6 5 4 31 31 H 0.96697 * 114.00131 * 270.01220 * 8 7 6 32 32 H 1.08003 * 120.02962 * 179.97438 * 9 7 6 33 33 H 1.07999 * 119.97074 * 179.97438 * 10 9 7 34 34 H 0.97000 * 119.99501 * 0.02562 * 13 11 2 35 35 H 1.09004 * 109.47298 * 300.00557 * 14 13 11 36 36 H 1.09000 * 109.47160 * 60.00094 * 14 13 11 37 37 H 1.09004 * 109.47275 * 300.00478 * 15 14 13 38 38 H 1.09000 * 109.47397 * 60.00196 * 15 14 13 39 39 H 0.97006 * 120.00061 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5289 2.5066 2.0696 6 6 1.7542 2.9020 3.3740 7 6 2.9102 2.5026 4.0289 8 8 3.1371 2.8956 5.3099 9 6 3.8342 1.7015 3.3738 10 6 3.6015 1.3041 2.0713 11 6 2.1388 -1.1672 -0.0005 12 8 3.3548 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6032 -0.0017 15 6 1.2032 -4.7660 -0.0021 16 6 1.9566 -6.0712 -0.0026 17 1 3.0366 -6.0713 -0.0022 18 6 1.2672 -7.2652 -0.0025 19 7 -0.0479 -7.2652 -0.0024 20 14 2.2012 -8.8830 -0.0039 21 1 3.6611 -8.6117 -0.0043 22 1 1.8433 -9.6621 1.2086 23 1 1.8414 -9.6612 -1.2164 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 0.6318 2.8217 1.5576 30 1 1.0335 3.5259 3.8818 31 1 3.6189 3.7305 5.3856 32 1 4.7351 1.3896 3.8813 33 1 4.3208 0.6809 1.5608 34 1 0.4949 -2.3344 -0.0005 35 1 2.8235 -3.6605 -0.8921 36 1 2.8247 -3.6613 0.8878 37 1 0.5768 -4.7089 0.8882 38 1 0.5762 -4.7078 -0.8918 39 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273336134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:18 Heat of formation + Delta-G solvation = -73.653003 kcal Electronic energy + Delta-G solvation = -20889.665423 eV Core-core repulsion = 17603.427336 eV Total energy + Delta-G solvation = -3286.238086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35407 -40.47075 -38.05789 -36.66674 -36.27012 -34.81518 -32.24364 -31.94430 -30.97592 -27.97606 -27.22584 -25.76638 -23.73509 -23.08417 -22.46891 -20.97433 -19.36688 -19.02935 -18.48845 -17.47108 -17.24732 -16.64893 -16.49097 -16.43038 -16.12231 -15.43293 -15.22022 -14.90837 -14.56855 -14.38333 -14.27846 -13.95091 -13.50845 -13.32224 -13.12005 -13.01935 -12.94777 -12.65677 -12.50766 -12.36398 -12.24199 -11.66178 -11.47307 -11.38631 -11.14070 -10.61094 -10.13842 -9.94448 -9.59384 -9.44162 -8.24478 -6.34698 0.17824 0.39907 1.40944 1.41716 1.55078 1.76759 2.17285 2.40661 2.70661 3.10264 3.15031 3.29773 3.86446 3.90978 4.06660 4.22940 4.33230 4.44030 4.46798 4.50743 4.64653 4.68829 4.78518 4.85396 4.91888 4.94792 5.07364 5.30240 5.32816 5.44770 5.50346 5.54192 5.58260 5.66412 5.78757 5.90803 5.95725 6.16852 6.78301 6.84748 7.01208 7.34611 7.59205 8.87725 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.003207 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.117379 B = 8728.431809 C = 9181.847903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.625 5.625 3 C 0.173 3.827 4 C -0.124 4.124 5 C -0.081 4.081 6 C -0.153 4.153 7 C 0.099 3.901 8 O -0.512 6.512 9 C -0.166 4.166 10 C -0.096 4.096 11 C 0.695 3.305 12 O -0.633 6.633 13 N -0.736 5.736 14 C 0.161 3.839 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.275 1.275 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.410 0.590 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.404 0.596 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.006 0.994 38 H 0.010 0.990 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 24.885 3.307 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C 0.050 3.950 4 C -0.125 4.125 5 C -0.099 4.099 6 C -0.171 4.171 7 C 0.055 3.945 8 O -0.325 6.325 9 C -0.185 4.185 10 C -0.115 4.115 11 C 0.396 3.604 12 O -0.514 6.514 13 N -0.392 5.392 14 C 0.037 3.963 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.201 1.201 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.177 0.823 30 H 0.168 0.832 31 H 0.269 0.731 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.241 0.759 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.036 24.256 3.426 24.497 hybrid contribution 0.387 -0.864 0.126 0.955 sum 0.423 23.393 3.551 23.665 Atomic orbital electron populations 1.22014 0.77446 1.04828 1.02713 1.47117 1.07704 1.03672 1.77680 1.20360 0.98362 0.83983 0.92273 1.20455 0.94988 0.99010 0.98050 1.21233 0.98888 0.95842 0.93934 1.21665 0.97958 1.02303 0.95204 1.18648 0.94402 0.97370 0.84087 1.84774 1.79602 1.45987 1.22151 1.21556 1.00667 1.01198 0.95055 1.21129 0.97957 0.97921 0.94509 1.16193 0.85103 0.81359 0.77740 1.90828 1.13458 1.87013 1.60148 1.45398 1.10405 1.04571 1.78811 1.21041 0.94617 0.81297 0.99368 1.19114 0.94194 0.91687 0.96244 1.21484 0.93566 0.91904 1.51484 0.92394 1.25871 0.95821 1.03078 0.94384 1.70064 1.07505 1.27946 1.51044 0.85385 0.78939 0.78717 0.77939 1.19037 1.20216 1.20069 0.92224 0.87075 0.91419 0.90967 0.85481 0.82292 0.83243 0.73067 0.85590 0.87271 0.75855 0.93803 0.94302 0.97550 0.97210 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.25 127.77 1.31 2.50 16 2 N -0.63 -15.67 2.86 -869.28 -2.48 -18.15 16 3 C 0.17 3.56 5.57 85.63 0.48 4.04 16 4 C -0.12 -2.70 5.46 -19.85 -0.11 -2.81 16 5 C -0.08 -1.33 9.69 22.26 0.22 -1.11 16 6 C -0.15 -2.67 9.99 22.37 0.22 -2.45 16 7 C 0.10 2.11 6.70 22.51 0.15 2.26 16 8 O -0.51 -9.35 13.50 -92.39 -1.25 -10.60 16 9 C -0.17 -4.08 9.99 22.37 0.22 -3.85 16 10 C -0.10 -2.58 9.69 22.25 0.22 -2.37 16 11 C 0.69 25.02 8.28 179.06 1.48 26.50 16 12 O -0.63 -27.55 15.44 -4.01 -0.06 -27.61 16 13 N -0.74 -27.33 5.42 -478.54 -2.59 -29.92 16 14 C 0.16 7.30 5.61 86.38 0.48 7.78 16 15 C 0.03 1.30 5.09 29.85 0.15 1.45 16 16 C -0.55 -31.12 9.11 25.60 0.23 -30.88 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 20 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.11 1.00 7.89 -2.38 -0.02 0.98 16 26 H 0.07 1.19 6.36 -2.39 -0.02 1.17 16 27 H 0.07 1.81 7.36 -2.39 -0.02 1.79 16 28 H 0.13 1.48 7.83 -2.39 -0.02 1.47 16 29 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 31 H 0.41 3.06 9.06 -74.06 -0.67 2.38 16 32 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.11 3.42 7.57 -2.91 -0.02 3.40 16 34 H 0.40 12.97 6.20 -92.71 -0.58 12.40 16 35 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.01 0.33 8.14 -2.38 -0.02 0.32 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -75.46 335.49 1.27 -74.20 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.18 Total: 18.36 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.52 Total: 1.93 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -4.79 Total: -102.47 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.31 Total: -38.21 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.46 1.27 -74.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273336134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.543 kcal (2) G-P(sol) polarization free energy of solvation -75.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds