Wall clock time and date at job start Tue Mar 31 2020 00:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46737 * 2 1 4 4 C 1.46495 * 119.99741 * 274.90092 * 3 2 1 5 5 C 1.50699 * 109.47115 * 263.49933 * 4 3 2 6 6 H 1.07996 * 120.00450 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99804 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99873 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00190 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47047 * 89.99725 * 9 7 5 11 11 H 1.48499 * 109.47219 * 209.99568 * 9 7 5 12 12 H 1.48495 * 109.47172 * 329.99932 * 9 7 5 13 13 C 1.34779 * 119.99822 * 94.90296 * 3 2 1 14 14 O 1.21680 * 119.99926 * 4.28509 * 13 3 2 15 15 C 1.46720 * 119.99634 * 184.27999 * 13 3 2 16 16 O 1.35347 * 126.64599 * 353.78489 * 15 13 3 17 17 C 1.33660 * 107.68533 * 180.02562 * 16 15 13 18 18 C 1.50699 * 125.42263 * 180.02562 * 17 16 15 19 19 C 1.53000 * 117.50022 * 171.37147 * 18 17 16 20 20 C 1.53000 * 60.00086 * 107.49006 * 19 18 17 21 21 N 1.30611 * 109.15532 * 0.25695 * 17 16 15 22 22 C 1.33695 * 108.99868 * 359.57455 * 21 17 16 23 23 C 1.50696 * 126.27956 * 180.16584 * 22 21 17 24 24 H 1.08999 * 109.46635 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47406 * 300.00067 * 1 2 3 26 26 H 1.08997 * 109.47173 * 60.00106 * 1 2 3 27 27 H 1.09001 * 109.47406 * 239.99933 * 2 1 3 28 28 H 1.08997 * 109.47173 * 119.99894 * 2 1 3 29 29 H 1.09004 * 109.47572 * 23.49998 * 4 3 2 30 30 H 1.09005 * 109.47153 * 143.49998 * 4 3 2 31 31 H 0.96997 * 119.99958 * 180.02562 * 8 7 5 32 32 H 1.09003 * 115.56482 * 25.67980 * 18 17 16 33 33 H 1.09003 * 117.50109 * 214.97521 * 19 18 17 34 34 H 1.08999 * 117.49955 * 0.02562 * 19 18 17 35 35 H 1.09005 * 117.49815 * 252.51539 * 20 19 18 36 36 H 1.08996 * 117.50034 * 107.48946 * 20 19 18 37 37 H 1.09002 * 109.47249 * 270.30672 * 23 22 21 38 38 H 1.09003 * 109.46919 * 30.30495 * 23 22 21 39 39 H 1.08996 * 109.46989 * 150.30242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1602 2.1080 -1.2641 5 6 3.5878 2.0175 -1.7380 6 1 4.3167 1.4735 -1.1557 7 6 3.9635 2.6292 -2.9152 8 7 5.2096 2.5507 -3.3285 9 14 2.7031 3.5708 -3.9221 10 1 2.6781 4.9892 -3.4828 11 1 3.0684 3.5043 -5.3599 12 1 1.3607 2.9676 -3.7241 13 6 2.3369 1.9834 1.1630 14 8 2.2937 1.3560 2.2047 15 6 2.7359 3.3953 1.1728 16 8 2.9427 4.1839 0.0924 17 6 3.2922 5.3956 0.5351 18 6 3.6146 6.5837 -0.3342 19 6 3.7962 7.9364 0.3571 20 6 5.0110 7.1954 -0.2050 21 7 3.3146 5.3848 1.8410 22 6 2.9706 4.1669 2.2721 23 6 2.8675 3.7260 3.7094 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5005 1.6682 -2.0121 30 1 1.8928 3.1540 -1.1139 31 1 5.4740 2.9813 -4.1565 32 1 3.1557 6.5814 -1.3230 33 1 3.4568 8.8241 -0.1767 34 1 3.6829 7.9670 1.4408 35 1 5.6965 6.7385 0.5089 36 1 5.4708 7.5955 -1.1086 37 1 3.8314 3.3401 4.0412 38 1 2.5830 4.5754 4.3305 39 1 2.1135 2.9437 3.7962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273628247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:14 Heat of formation + Delta-G solvation = 16.519340 kcal Electronic energy + Delta-G solvation = -22592.629778 eV Core-core repulsion = 19310.301858 eV Total energy + Delta-G solvation = -3282.327920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.91327 -39.10900 -37.11605 -35.75956 -34.47761 -32.74958 -31.34277 -30.39307 -27.98351 -27.22245 -24.79732 -23.00154 -22.60072 -22.34592 -20.91359 -20.35160 -19.11285 -17.17270 -16.75578 -16.36255 -16.22863 -15.75582 -14.69675 -14.55694 -14.40175 -14.14496 -13.51536 -13.17457 -12.95067 -12.84407 -12.56599 -12.36438 -12.26127 -11.83357 -11.76820 -11.60457 -11.48727 -11.04523 -11.00499 -10.80380 -10.61114 -10.55044 -10.31909 -10.31148 -10.17448 -9.68815 -9.48753 -8.71319 -8.31893 -7.82311 -6.20622 -4.20800 1.36122 2.74830 2.87962 3.13797 3.22591 3.23408 3.65186 3.69331 3.95113 4.23837 4.25841 4.82696 4.93268 5.01317 5.10139 5.16568 5.23083 5.48147 5.61801 5.65587 5.71274 5.71681 5.88601 5.92895 6.04763 6.09834 6.10522 6.18733 6.21222 6.27084 6.29626 6.41563 6.48094 6.67251 6.80161 7.20717 7.42367 7.89563 8.09589 8.35242 8.63787 8.83849 9.38247 10.92375 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.010030 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.504101 B = 2790.955879 C = 4626.045375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.579 5.579 4 C 0.204 3.796 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.607 3.393 14 O -0.545 6.545 15 C -0.089 4.089 16 O -0.137 6.137 17 C 0.234 3.766 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.150 4.150 21 N -0.494 5.494 22 C 0.056 3.944 23 C -0.069 4.069 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 5.964 5.744 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.308 5.308 4 C 0.083 3.917 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.123 4.123 8 N -0.528 5.528 9 Si 0.694 3.306 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.395 3.605 14 O -0.427 6.427 15 C -0.145 4.145 16 O -0.021 6.021 17 C 0.029 3.971 18 C -0.100 4.100 19 C -0.186 4.186 20 C -0.188 4.188 21 N -0.225 5.225 22 C -0.069 4.069 23 C -0.126 4.126 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.999 6.158 6.358 10.692 hybrid contribution -0.580 -0.088 -1.431 1.546 sum -6.579 6.070 4.927 10.218 Atomic orbital electron populations 1.22139 0.96450 1.01689 1.02021 1.21384 0.93523 0.82640 1.03490 1.47880 1.61849 1.13842 1.07258 1.20051 0.98754 0.92088 0.80820 1.21245 0.93050 1.34920 1.07720 0.90635 1.24780 0.95012 0.95522 0.96950 1.69889 1.16409 1.43881 1.22661 0.86983 0.82381 0.81162 0.80035 1.19763 1.20876 1.19027 1.16395 0.77264 0.82755 0.84102 1.90744 1.56562 1.63369 1.32045 1.22853 1.12645 0.94074 0.84944 1.84967 1.63408 1.19522 1.34237 1.25160 0.96632 0.86135 0.89170 1.20072 1.03498 0.87822 0.98565 1.23071 1.01247 0.92573 1.01740 1.23075 0.90115 1.01943 1.03643 1.70131 1.20989 1.22328 1.09063 1.21874 0.99377 0.88477 0.97174 1.20219 1.03627 1.01363 0.87429 0.91835 0.92722 0.92588 0.90019 0.89997 0.94442 0.94307 0.92444 0.84970 0.87787 0.87214 0.87955 0.87498 0.90566 0.91214 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.11 1.98 6.18 -4.04 -0.02 1.96 16 3 N -0.58 -12.36 2.48 -176.59 -0.44 -12.80 16 4 C 0.20 4.71 3.86 -5.20 -0.02 4.69 16 5 C -0.53 -14.40 9.06 -34.44 -0.31 -14.72 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 8 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 9 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -5.84 6.54 56.52 0.37 -5.48 16 13 C 0.61 13.31 7.58 -12.83 -0.10 13.21 16 14 O -0.55 -11.96 14.36 5.21 0.07 -11.89 16 15 C -0.09 -1.94 6.77 -36.84 -0.25 -2.18 16 16 O -0.14 -3.07 6.86 4.42 0.03 -3.04 16 17 C 0.23 4.57 7.86 -12.80 -0.10 4.47 16 18 C -0.08 -1.27 6.33 -91.77 -0.58 -1.85 16 19 C -0.15 -1.80 10.13 -26.73 -0.27 -2.07 16 20 C -0.15 -2.01 10.23 -26.73 -0.27 -2.29 16 21 N -0.49 -9.48 10.79 -7.07 -0.08 -9.56 16 22 C 0.06 1.10 7.16 -82.46 -0.59 0.50 16 23 C -0.07 -1.10 9.81 36.00 0.35 -0.75 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 28 H 0.08 1.44 7.23 -51.93 -0.38 1.06 16 29 H 0.04 0.84 7.08 -51.93 -0.37 0.47 16 30 H 0.04 0.92 4.81 -51.93 -0.25 0.67 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.13 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.38 7.87 -51.93 -0.41 0.97 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.44 6.62 -51.93 -0.34 1.10 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -31.12 328.72 -6.79 -37.92 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.56 Total: 3.26 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.88 Total: 1.08 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.26 Total: -47.65 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.11 Total: -14.92 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.12 -6.79 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273628247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.436 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds