Wall clock time and date at job start Tue Mar 31 2020 00:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46737 * 2 1 4 4 C 1.46495 * 119.99741 * 274.90092 * 3 2 1 5 5 C 1.50699 * 109.47115 * 263.49933 * 4 3 2 6 6 H 1.07996 * 120.00450 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99804 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99873 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00190 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47047 * 89.99725 * 9 7 5 11 11 H 1.48499 * 109.47219 * 209.99568 * 9 7 5 12 12 H 1.48495 * 109.47172 * 329.99932 * 9 7 5 13 13 C 1.34779 * 119.99822 * 94.90296 * 3 2 1 14 14 O 1.21680 * 119.99926 * 4.28509 * 13 3 2 15 15 C 1.46720 * 119.99634 * 184.27999 * 13 3 2 16 16 O 1.35347 * 126.64599 * 353.78489 * 15 13 3 17 17 C 1.33660 * 107.68533 * 180.02562 * 16 15 13 18 18 C 1.50699 * 125.42263 * 180.02562 * 17 16 15 19 19 C 1.53000 * 117.50022 * 171.37147 * 18 17 16 20 20 C 1.53000 * 60.00086 * 107.49006 * 19 18 17 21 21 N 1.30611 * 109.15532 * 0.25695 * 17 16 15 22 22 C 1.33695 * 108.99868 * 359.57455 * 21 17 16 23 23 C 1.50696 * 126.27956 * 180.16584 * 22 21 17 24 24 H 1.08999 * 109.46635 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47406 * 300.00067 * 1 2 3 26 26 H 1.08997 * 109.47173 * 60.00106 * 1 2 3 27 27 H 1.09001 * 109.47406 * 239.99933 * 2 1 3 28 28 H 1.08997 * 109.47173 * 119.99894 * 2 1 3 29 29 H 1.09004 * 109.47572 * 23.49998 * 4 3 2 30 30 H 1.09005 * 109.47153 * 143.49998 * 4 3 2 31 31 H 0.96997 * 119.99958 * 180.02562 * 8 7 5 32 32 H 1.09003 * 115.56482 * 25.67980 * 18 17 16 33 33 H 1.09003 * 117.50109 * 214.97521 * 19 18 17 34 34 H 1.08999 * 117.49955 * 0.02562 * 19 18 17 35 35 H 1.09005 * 117.49815 * 252.51539 * 20 19 18 36 36 H 1.08996 * 117.50034 * 107.48946 * 20 19 18 37 37 H 1.09002 * 109.47249 * 270.30672 * 23 22 21 38 38 H 1.09003 * 109.46919 * 30.30495 * 23 22 21 39 39 H 1.08996 * 109.46989 * 150.30242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1602 2.1080 -1.2641 5 6 3.5878 2.0175 -1.7380 6 1 4.3167 1.4735 -1.1557 7 6 3.9635 2.6292 -2.9152 8 7 5.2096 2.5507 -3.3285 9 14 2.7031 3.5708 -3.9221 10 1 2.6781 4.9892 -3.4828 11 1 3.0684 3.5043 -5.3599 12 1 1.3607 2.9676 -3.7241 13 6 2.3369 1.9834 1.1630 14 8 2.2937 1.3560 2.2047 15 6 2.7359 3.3953 1.1728 16 8 2.9427 4.1839 0.0924 17 6 3.2922 5.3956 0.5351 18 6 3.6146 6.5837 -0.3342 19 6 3.7962 7.9364 0.3571 20 6 5.0110 7.1954 -0.2050 21 7 3.3146 5.3848 1.8410 22 6 2.9706 4.1669 2.2721 23 6 2.8675 3.7260 3.7094 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5005 1.6682 -2.0121 30 1 1.8928 3.1540 -1.1139 31 1 5.4740 2.9813 -4.1565 32 1 3.1557 6.5814 -1.3230 33 1 3.4568 8.8241 -0.1767 34 1 3.6829 7.9670 1.4408 35 1 5.6965 6.7385 0.5089 36 1 5.4708 7.5955 -1.1086 37 1 3.8314 3.3401 4.0412 38 1 2.5830 4.5754 4.3305 39 1 2.1135 2.9437 3.7962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273628247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:12 Heat of formation + Delta-G solvation = -4.180215 kcal Electronic energy + Delta-G solvation = -22593.527378 eV Core-core repulsion = 19310.301858 eV Total energy + Delta-G solvation = -3283.225520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -44.45485 -40.75614 -38.25200 -37.41606 -36.02870 -34.75095 -32.86133 -31.84924 -29.80504 -28.70640 -26.18515 -24.69414 -24.25324 -23.36435 -22.38975 -21.72067 -20.74091 -19.20895 -18.41771 -17.88777 -17.66775 -17.38075 -16.32071 -16.10476 -15.76003 -15.66358 -15.03778 -14.76757 -14.41929 -14.32318 -14.20721 -13.91516 -13.55323 -13.32107 -13.25958 -13.03513 -12.66581 -12.55867 -12.44646 -12.34028 -12.16001 -11.93941 -11.85577 -11.74408 -11.61458 -11.55303 -11.14390 -10.79444 -9.90193 -9.46464 -8.32050 -6.38623 -0.21260 1.25929 1.32924 1.33540 1.42813 1.46132 2.00976 2.13177 2.30884 2.75997 2.89087 3.01826 3.48532 3.66265 3.75722 3.95078 3.97362 4.15712 4.29578 4.34347 4.44846 4.55574 4.62711 4.68497 4.72262 4.74797 4.83375 4.87144 4.89174 4.96814 5.03417 5.04248 5.21909 5.26251 5.32831 5.39132 5.56320 6.06833 6.33518 6.54825 6.62751 6.97117 7.25426 8.84848 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.010030 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.504101 B = 2790.955879 C = 4626.045375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 N -0.587 5.587 4 C 0.216 3.784 5 C -0.532 4.532 6 H 0.021 0.979 7 C 0.027 3.973 8 N -0.940 5.940 9 Si 0.932 3.068 10 H -0.254 1.254 11 H -0.280 1.280 12 H -0.244 1.244 13 C 0.601 3.399 14 O -0.554 6.554 15 C -0.132 4.132 16 O -0.164 6.164 17 C 0.234 3.766 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.149 4.149 21 N -0.498 5.498 22 C 0.064 3.936 23 C -0.066 4.066 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.269 0.731 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 7.804 5.549 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 N -0.315 5.315 4 C 0.095 3.905 5 C -0.570 4.570 6 H 0.039 0.961 7 C -0.172 4.172 8 N -0.579 5.579 9 Si 0.754 3.246 10 H -0.178 1.178 11 H -0.206 1.206 12 H -0.168 1.168 13 C 0.389 3.611 14 O -0.437 6.437 15 C -0.187 4.187 16 O -0.049 6.049 17 C 0.029 3.971 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.187 4.187 21 N -0.228 5.228 22 C -0.061 4.061 23 C -0.123 4.123 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.811 7.978 6.193 12.767 hybrid contribution 0.110 -0.665 -1.291 1.457 sum -7.701 7.313 4.902 11.696 Atomic orbital electron populations 1.22049 0.93527 1.03704 1.01793 1.21639 0.95895 0.80878 1.03344 1.47979 1.62046 1.15028 1.06496 1.19788 0.96196 0.92717 0.81811 1.21285 0.94140 1.34231 1.07380 0.96082 1.25658 0.97112 0.96324 0.98071 1.70047 1.18953 1.45409 1.23523 0.85950 0.80238 0.80493 0.77923 1.17844 1.20577 1.16775 1.16555 0.77158 0.83140 0.84223 1.90712 1.57140 1.63758 1.32109 1.22982 1.15588 0.94486 0.85679 1.84904 1.64398 1.20607 1.35029 1.26144 0.94822 0.86183 0.89908 1.20453 1.05777 0.88401 0.99047 1.23211 0.98646 0.91509 1.01660 1.23192 0.89418 1.01648 1.04461 1.70196 1.21633 1.22018 1.09001 1.22483 0.97168 0.88217 0.98264 1.20321 1.03945 1.02320 0.85673 0.88690 0.93247 0.92402 0.90048 0.90286 0.92973 0.94058 0.92206 0.84538 0.84132 0.87606 0.89463 0.85334 0.89816 0.88504 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 10.24 71.98 0.74 -3.45 16 2 C 0.10 3.66 6.18 86.38 0.53 4.20 16 3 N -0.59 -25.38 2.48 -830.81 -2.06 -27.43 16 4 C 0.22 10.04 3.86 85.63 0.33 10.37 16 5 C -0.53 -29.79 9.06 25.60 0.23 -29.56 16 6 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 7 C 0.03 1.52 5.47 84.65 0.46 1.98 16 8 N -0.94 -56.54 13.96 21.45 0.30 -56.24 16 9 Si 0.93 40.56 27.47 68.60 1.88 42.44 16 10 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 13 C 0.60 26.92 7.58 86.46 0.66 27.58 16 14 O -0.55 -24.70 14.36 -4.28 -0.06 -24.76 16 15 C -0.13 -5.86 6.77 24.05 0.16 -5.70 16 16 O -0.16 -7.43 6.86 -7.08 -0.05 -7.48 16 17 C 0.23 9.08 7.86 88.29 0.69 9.78 16 18 C -0.12 -3.53 6.33 -11.54 -0.07 -3.61 16 19 C -0.11 -2.38 10.13 30.59 0.31 -2.07 16 20 C -0.15 -3.74 10.23 30.59 0.31 -3.42 16 21 N -0.50 -18.84 10.79 -291.07 -3.14 -21.98 16 22 C 0.06 2.49 7.16 41.83 0.30 2.79 16 23 C -0.07 -2.02 9.81 71.23 0.70 -1.32 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 28 H 0.08 2.80 7.23 -2.39 -0.02 2.78 16 29 H 0.05 2.26 7.08 -2.38 -0.02 2.25 16 30 H 0.04 1.94 4.81 -2.38 -0.01 1.93 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 33 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 2.36 7.87 -2.39 -0.02 2.34 16 35 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.13 2.63 8.14 -2.39 -0.02 2.62 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.09 2.72 6.62 -2.39 -0.02 2.71 16 Total: -1.00 -70.03 328.72 3.23 -66.80 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 1.00 Total: 21.09 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.36 Total: 7.56 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.90 Total: -105.65 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.11 Total: -32.24 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.88 Total: 42.44 kcal Total: -70.03 3.23 -66.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273628247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.620 kcal (2) G-P(sol) polarization free energy of solvation -70.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds