Wall clock time and date at job start Tue Mar 31 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47552 * 2 1 4 4 C 1.36779 * 119.99471 * 263.73837 * 3 2 1 5 5 H 1.08003 * 119.99768 * 143.85992 * 4 3 2 6 6 C 1.39112 * 120.00472 * 323.85373 * 4 3 2 7 7 N 1.31321 * 120.00121 * 160.92564 * 6 4 3 8 8 Si 1.86798 * 119.99640 * 340.92519 * 6 4 3 9 9 H 1.48503 * 109.47130 * 89.98021 * 8 6 4 10 10 H 1.48503 * 109.47006 * 209.97270 * 8 6 4 11 11 H 1.48494 * 109.47684 * 329.98011 * 8 6 4 12 12 C 1.34774 * 120.00207 * 83.73442 * 3 2 1 13 13 O 1.21548 * 120.00053 * 185.23974 * 12 3 2 14 14 C 1.48165 * 119.99772 * 5.24617 * 12 3 2 15 15 N 1.31427 * 127.14318 * 355.41830 * 14 12 3 16 16 O 1.21240 * 111.46705 * 179.97438 * 15 14 12 17 17 C 1.33663 * 111.65505 * 359.61779 * 16 15 14 18 18 C 1.34946 * 106.62235 * 0.68359 * 17 16 15 19 19 C 1.50083 * 126.60977 * 179.23172 * 18 17 16 20 20 C 1.53334 * 109.03452 * 27.93037 * 19 18 17 21 21 C 1.52545 * 109.60039 * 271.60956 * 20 19 18 22 22 C 1.52629 * 110.97926 * 61.28043 * 21 20 19 23 23 C 1.50616 * 127.98063 * 181.61581 * 17 16 15 24 24 H 1.09001 * 109.47213 * 300.00763 * 1 2 3 25 25 H 1.09005 * 109.46803 * 59.99888 * 1 2 3 26 26 H 1.08995 * 109.47664 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47213 * 239.99237 * 2 1 3 28 28 H 1.09005 * 109.46803 * 120.00112 * 2 1 3 29 29 H 0.96997 * 120.00144 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.56240 * 147.82274 * 19 18 17 31 31 H 1.08994 * 109.55717 * 268.04302 * 19 18 17 32 32 H 1.09000 * 109.46255 * 31.54568 * 20 19 18 33 33 H 1.09003 * 109.45924 * 151.49797 * 20 19 18 34 34 H 1.08998 * 109.11265 * 300.92053 * 21 20 19 35 35 H 1.08997 * 109.20289 * 181.69426 * 21 20 19 36 36 H 1.08998 * 109.39969 * 273.57697 * 22 21 20 37 37 H 1.09000 * 109.33443 * 153.79337 * 22 21 20 38 38 H 1.09010 * 109.53357 * 345.80095 * 23 17 16 39 39 H 1.08995 * 109.54007 * 105.95450 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3682 1.9828 -1.1775 5 1 2.1686 3.0336 -1.3272 6 6 2.9812 1.2412 -2.1824 7 7 2.9811 1.6844 -3.4185 8 14 3.8043 -0.3849 -1.7731 9 1 2.8169 -1.4864 -1.9046 10 1 4.9331 -0.6178 -2.7095 11 1 4.3170 -0.3436 -0.3801 12 6 2.1230 2.0590 1.1602 13 8 2.4367 3.2333 1.1518 14 6 1.8558 1.3726 2.4458 15 7 1.4296 0.1408 2.6142 16 8 1.3081 -0.1298 3.7897 17 6 1.6503 0.8994 4.5708 18 6 2.0055 1.9077 3.7472 19 6 2.4530 3.2810 4.1549 20 6 3.1099 3.2028 5.5381 21 6 2.0469 3.3688 6.6196 22 6 1.0065 2.2550 6.5388 23 6 1.6705 0.9542 6.0758 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.4082 1.1672 -4.1192 30 1 3.1731 3.6604 3.4299 31 1 1.5919 3.9478 4.1971 32 1 3.5961 2.2342 5.6551 33 1 3.8524 3.9952 5.6329 34 1 1.5523 4.3313 6.4889 35 1 2.5246 3.3424 7.5989 36 1 0.2287 2.5370 5.8292 37 1 0.5619 2.1045 7.5225 38 1 1.1232 0.1021 6.4790 39 1 2.7016 0.9246 6.4278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275440387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:30 Heat of formation + Delta-G solvation = 37.672402 kcal Electronic energy + Delta-G solvation = -22702.814204 eV Core-core repulsion = 19421.403550 eV Total energy + Delta-G solvation = -3281.410655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.63284 -38.75751 -38.12608 -35.28855 -33.66888 -32.34179 -31.78717 -30.97055 -29.72911 -26.29403 -25.69663 -24.75253 -23.12181 -22.69990 -20.69710 -19.76654 -19.02962 -17.45296 -17.03145 -16.74375 -16.14632 -15.64771 -15.24578 -14.85122 -14.15193 -13.78412 -13.68424 -13.43896 -13.23296 -13.20356 -12.65399 -12.43783 -12.38393 -12.07224 -11.92912 -11.57630 -11.50536 -11.18984 -11.01076 -10.93906 -10.75187 -10.59834 -10.36290 -10.01625 -9.87773 -9.55605 -9.19681 -8.81564 -8.73653 -7.84758 -6.48872 -4.03057 1.60831 2.14500 3.01285 3.18684 3.23490 3.24259 4.05358 4.06766 4.17747 4.50056 4.66299 4.72014 4.79811 4.94415 4.96879 5.04617 5.26040 5.29703 5.32129 5.62457 5.65197 5.70094 5.79151 5.82130 5.88694 5.95027 6.01371 6.03273 6.10510 6.13364 6.23966 6.29900 6.44219 6.52632 6.60678 6.85925 7.45490 8.17293 8.36424 8.55019 8.84054 9.21045 9.66516 10.61911 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.005643 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.336247 B = 4960.540419 C = 5374.450759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 N -0.437 5.437 4 C -0.313 4.313 5 H 0.112 0.888 6 C 0.063 3.937 7 N -0.854 5.854 8 Si 0.881 3.119 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.524 3.476 13 O -0.553 6.553 14 C 0.008 3.992 15 N -0.345 5.345 16 O 0.100 5.900 17 C -0.052 4.052 18 C -0.151 4.151 19 C -0.044 4.044 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.033 4.033 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.277 0.723 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -3.162 19.132 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.052 4.052 3 N -0.157 5.157 4 C -0.441 4.441 5 H 0.129 0.871 6 C -0.145 4.145 7 N -0.490 5.490 8 Si 0.709 3.291 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.189 1.189 12 C 0.312 3.688 13 O -0.434 6.434 14 C -0.151 4.151 15 N -0.053 5.053 16 O 0.033 5.967 17 C -0.116 4.116 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.071 4.071 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.800 -3.554 18.036 18.594 hybrid contribution 0.607 -0.397 0.171 0.745 sum -2.193 -3.952 18.207 18.759 Atomic orbital electron populations 1.21945 0.95825 1.00980 1.01941 1.22209 0.95338 0.85122 1.02574 1.43641 1.54552 1.11834 1.05680 1.19131 1.38441 0.98064 0.88462 0.87056 1.25375 0.95881 0.98498 0.94701 1.69671 1.40188 1.39494 0.99653 0.86964 0.79433 0.83248 0.79429 1.19712 1.21236 1.18886 1.16887 0.83960 0.87168 0.80816 1.90629 1.52277 1.14962 1.85566 1.23797 1.02829 0.91029 0.97441 1.74589 1.18736 1.16623 0.95342 1.84744 1.63204 1.36744 1.12000 1.23943 1.03829 0.87807 0.95978 1.20624 1.05571 0.98885 0.90473 1.19934 1.01229 0.90497 0.96506 1.21731 0.97948 1.02485 0.94045 1.21523 0.96735 0.98786 0.98812 1.21571 0.98587 0.93625 1.01616 1.20161 1.03027 0.99549 0.84405 0.93239 0.92033 0.92596 0.90881 0.89616 0.91246 0.88901 0.90370 0.91425 0.91268 0.91595 0.91965 0.91234 0.90810 0.89767 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.82 37.16 0.36 -2.59 16 2 C 0.07 1.61 4.24 -4.04 -0.02 1.59 16 3 N -0.44 -11.41 2.23 -115.78 -0.26 -11.67 16 4 C -0.31 -9.10 9.45 -15.02 -0.14 -9.24 16 5 H 0.11 3.57 7.83 -52.48 -0.41 3.16 16 6 C 0.06 1.76 5.34 -17.45 -0.09 1.67 16 7 N -0.85 -24.71 13.95 55.50 0.77 -23.93 16 8 Si 0.88 21.30 24.96 -169.99 -4.24 17.05 16 9 H -0.27 -6.09 6.46 56.52 0.37 -5.72 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.51 7.11 56.52 0.40 -6.10 16 12 C 0.52 13.35 7.59 -12.18 -0.09 13.25 16 13 O -0.55 -15.30 15.38 5.32 0.08 -15.22 16 14 C 0.01 0.16 6.72 -82.72 -0.56 -0.39 16 15 N -0.34 -6.70 7.75 33.31 0.26 -6.44 16 16 O 0.10 1.63 11.18 18.07 0.20 1.83 16 17 C -0.05 -0.74 6.64 -35.52 -0.24 -0.98 16 18 C -0.15 -2.59 5.73 -104.85 -0.60 -3.19 16 19 C -0.04 -0.66 5.34 -28.01 -0.15 -0.81 16 20 C -0.12 -1.34 5.55 -26.79 -0.15 -1.49 16 21 C -0.12 -1.02 5.63 -27.15 -0.15 -1.17 16 22 C -0.12 -0.98 5.63 -26.81 -0.15 -1.13 16 23 C -0.03 -0.31 5.55 -27.82 -0.15 -0.46 16 24 H 0.05 0.98 7.30 -51.93 -0.38 0.60 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.71 3.00 -51.93 -0.16 1.56 16 28 H 0.09 1.88 5.25 -51.93 -0.27 1.60 16 29 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.09 1.64 7.16 -51.93 -0.37 1.27 16 31 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 32 H 0.07 0.72 5.69 -51.93 -0.30 0.43 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.10 0.78 6.38 -51.93 -0.33 0.44 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -31.93 302.84 -5.90 -37.83 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.16 Total: 0.92 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.13 Total: -4.95 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.77 Total: -42.04 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.28 Total: -13.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.24 Total: 17.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.93 -5.90 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275440387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.507 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds