Wall clock time and date at job start Tue Mar 31 2020 00:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47552 * 2 1 4 4 C 1.36779 * 119.99471 * 263.73837 * 3 2 1 5 5 H 1.08003 * 119.99768 * 143.85992 * 4 3 2 6 6 C 1.39112 * 120.00472 * 323.85373 * 4 3 2 7 7 N 1.31321 * 120.00121 * 160.92564 * 6 4 3 8 8 Si 1.86798 * 119.99640 * 340.92519 * 6 4 3 9 9 H 1.48503 * 109.47130 * 89.98021 * 8 6 4 10 10 H 1.48503 * 109.47006 * 209.97270 * 8 6 4 11 11 H 1.48494 * 109.47684 * 329.98011 * 8 6 4 12 12 C 1.34774 * 120.00207 * 83.73442 * 3 2 1 13 13 O 1.21548 * 120.00053 * 185.23974 * 12 3 2 14 14 C 1.48165 * 119.99772 * 5.24617 * 12 3 2 15 15 N 1.31427 * 127.14318 * 355.41830 * 14 12 3 16 16 O 1.21240 * 111.46705 * 179.97438 * 15 14 12 17 17 C 1.33663 * 111.65505 * 359.61779 * 16 15 14 18 18 C 1.34946 * 106.62235 * 0.68359 * 17 16 15 19 19 C 1.50083 * 126.60977 * 179.23172 * 18 17 16 20 20 C 1.53334 * 109.03452 * 27.93037 * 19 18 17 21 21 C 1.52545 * 109.60039 * 271.60956 * 20 19 18 22 22 C 1.52629 * 110.97926 * 61.28043 * 21 20 19 23 23 C 1.50616 * 127.98063 * 181.61581 * 17 16 15 24 24 H 1.09001 * 109.47213 * 300.00763 * 1 2 3 25 25 H 1.09005 * 109.46803 * 59.99888 * 1 2 3 26 26 H 1.08995 * 109.47664 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47213 * 239.99237 * 2 1 3 28 28 H 1.09005 * 109.46803 * 120.00112 * 2 1 3 29 29 H 0.96997 * 120.00144 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.56240 * 147.82274 * 19 18 17 31 31 H 1.08994 * 109.55717 * 268.04302 * 19 18 17 32 32 H 1.09000 * 109.46255 * 31.54568 * 20 19 18 33 33 H 1.09003 * 109.45924 * 151.49797 * 20 19 18 34 34 H 1.08998 * 109.11265 * 300.92053 * 21 20 19 35 35 H 1.08997 * 109.20289 * 181.69426 * 21 20 19 36 36 H 1.08998 * 109.39969 * 273.57697 * 22 21 20 37 37 H 1.09000 * 109.33443 * 153.79337 * 22 21 20 38 38 H 1.09010 * 109.53357 * 345.80095 * 23 17 16 39 39 H 1.08995 * 109.54007 * 105.95450 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3682 1.9828 -1.1775 5 1 2.1686 3.0336 -1.3272 6 6 2.9812 1.2412 -2.1824 7 7 2.9811 1.6844 -3.4185 8 14 3.8043 -0.3849 -1.7731 9 1 2.8169 -1.4864 -1.9046 10 1 4.9331 -0.6178 -2.7095 11 1 4.3170 -0.3436 -0.3801 12 6 2.1230 2.0590 1.1602 13 8 2.4367 3.2333 1.1518 14 6 1.8558 1.3726 2.4458 15 7 1.4296 0.1408 2.6142 16 8 1.3081 -0.1298 3.7897 17 6 1.6503 0.8994 4.5708 18 6 2.0055 1.9077 3.7472 19 6 2.4530 3.2810 4.1549 20 6 3.1099 3.2028 5.5381 21 6 2.0469 3.3688 6.6196 22 6 1.0065 2.2550 6.5388 23 6 1.6705 0.9542 6.0758 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.4082 1.1672 -4.1192 30 1 3.1731 3.6604 3.4299 31 1 1.5919 3.9478 4.1971 32 1 3.5961 2.2342 5.6551 33 1 3.8524 3.9952 5.6329 34 1 1.5523 4.3313 6.4889 35 1 2.5246 3.3424 7.5989 36 1 0.2287 2.5370 5.8292 37 1 0.5619 2.1045 7.5225 38 1 1.1232 0.1021 6.4790 39 1 2.7016 0.9246 6.4278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275440387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:29 Heat of formation + Delta-G solvation = 17.256575 kcal Electronic energy + Delta-G solvation = -22703.699501 eV Core-core repulsion = 19421.403550 eV Total energy + Delta-G solvation = -3282.295951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.09255 -40.72476 -39.07161 -37.28479 -35.16364 -34.33234 -32.86743 -32.13710 -31.55626 -27.98358 -27.04935 -25.72368 -24.90638 -24.43306 -22.04766 -20.77213 -20.49115 -19.07206 -18.87348 -18.29339 -17.80882 -17.48134 -16.33538 -16.10625 -15.78878 -15.66744 -15.21875 -14.63561 -14.59691 -14.40093 -14.30523 -14.17554 -13.97682 -13.33863 -13.25700 -12.98172 -12.83438 -12.74788 -12.63830 -12.10118 -12.03147 -11.76312 -11.71204 -11.43534 -11.29532 -11.18897 -11.13833 -10.72318 -10.05437 -9.91701 -8.65654 -6.27974 0.15166 0.72226 1.08889 1.22187 1.32238 2.01577 2.04276 2.16639 2.36114 2.78079 3.05738 3.57160 3.71467 3.90134 3.94851 4.00907 4.09701 4.17551 4.27114 4.31448 4.42397 4.46623 4.49273 4.77009 4.80785 4.84858 4.87636 4.91943 4.97055 5.09811 5.18542 5.24169 5.30772 5.38282 5.39718 5.45434 5.55772 5.87631 6.34499 6.69106 7.04678 7.13219 7.60824 8.50430 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.005643 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.336247 B = 4960.540419 C = 5374.450759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.068 3.932 3 N -0.451 5.451 4 C -0.339 4.339 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.894 5.894 8 Si 0.945 3.055 9 H -0.235 1.235 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.521 3.479 13 O -0.592 6.592 14 C -0.032 4.032 15 N -0.351 5.351 16 O 0.125 5.875 17 C -0.019 4.019 18 C -0.170 4.170 19 C -0.043 4.043 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.033 4.033 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.286 0.714 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -6.146 23.116 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 N -0.172 5.172 4 C -0.467 4.467 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.531 5.531 8 Si 0.769 3.231 9 H -0.160 1.160 10 H -0.200 1.200 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.475 6.475 14 C -0.188 4.188 15 N -0.054 5.054 16 O 0.052 5.948 17 C -0.084 4.084 18 C -0.176 4.176 19 C -0.081 4.081 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.071 4.071 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.051 -6.541 21.961 23.117 hybrid contribution 0.615 0.615 -0.923 1.268 sum -2.436 -5.926 21.038 21.992 Atomic orbital electron populations 1.21886 0.93833 1.03153 1.00962 1.22387 0.97065 0.83085 1.02810 1.43724 1.55370 1.13172 1.04909 1.18724 1.40870 0.96377 0.90725 0.92600 1.26069 0.95535 1.02514 0.93978 1.69756 1.41008 1.41635 1.00681 0.85956 0.79107 0.79418 0.78665 1.16030 1.20018 1.19726 1.17481 0.82420 0.86848 0.82259 1.90583 1.53441 1.16805 1.86675 1.23308 1.06336 0.92448 0.96694 1.74494 1.18334 1.15647 0.96968 1.84708 1.61812 1.37024 1.11226 1.24804 1.00277 0.85445 0.97835 1.20900 1.06759 1.00571 0.89344 1.19942 1.00378 0.89407 0.98369 1.21721 0.98696 1.03198 0.91864 1.21526 0.96101 0.98909 0.98988 1.21613 0.97937 0.92858 1.02836 1.20566 1.05147 1.01341 0.80031 0.93547 0.93690 0.88698 0.91357 0.88317 0.90385 0.92901 0.90739 0.90740 0.90570 0.91803 0.89038 0.93271 0.87384 0.86593 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 9.82 71.98 0.71 -4.78 16 2 C 0.07 3.10 4.24 86.38 0.37 3.47 16 3 N -0.45 -24.63 2.23 -638.49 -1.42 -26.05 16 4 C -0.34 -21.05 9.45 84.13 0.80 -20.26 16 5 H 0.06 3.97 7.83 -2.91 -0.02 3.95 16 6 C 0.02 1.37 5.34 84.98 0.45 1.82 16 7 N -0.89 -53.81 13.95 21.69 0.30 -53.51 16 8 Si 0.94 44.13 24.96 68.60 1.71 45.84 16 9 H -0.24 -9.67 6.46 99.48 0.64 -9.03 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.52 28.02 7.59 86.88 0.66 28.67 16 13 O -0.59 -35.42 15.38 -3.87 -0.06 -35.48 16 14 C -0.03 -1.35 6.72 42.65 0.29 -1.07 16 15 N -0.35 -13.12 7.75 -49.00 -0.38 -13.50 16 16 O 0.12 3.69 11.18 74.73 0.84 4.53 16 17 C -0.02 -0.49 6.64 24.90 0.17 -0.33 16 18 C -0.17 -5.76 5.73 -20.01 -0.11 -5.88 16 19 C -0.04 -1.32 5.34 29.77 0.16 -1.16 16 20 C -0.12 -2.27 5.55 30.55 0.17 -2.10 16 21 C -0.12 -1.52 5.63 30.32 0.17 -1.35 16 22 C -0.11 -1.39 5.63 30.54 0.17 -1.21 16 23 C -0.03 -0.44 5.55 29.89 0.17 -0.27 16 24 H 0.05 1.81 7.30 -2.39 -0.02 1.80 16 25 H 0.04 1.87 8.14 -2.38 -0.02 1.86 16 26 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 27 H 0.07 3.12 3.00 -2.39 -0.01 3.11 16 28 H 0.10 4.20 5.25 -2.38 -0.01 4.19 16 29 H 0.29 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.05 2.01 7.16 -2.39 -0.02 1.99 16 31 H 0.07 2.25 7.83 -2.39 -0.02 2.23 16 32 H 0.07 1.34 5.69 -2.39 -0.01 1.32 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.82 7.79 -2.39 -0.02 0.80 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.12 1.19 6.38 -2.39 -0.02 1.17 16 Total: -1.00 -76.96 302.84 6.15 -70.81 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.01 Total: 11.81 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 4.16 Total: -4.44 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -1.50 Total: -93.06 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: 0.78 Total: -30.96 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.71 Total: 45.84 kcal Total: -76.96 6.15 -70.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275440387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.064 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds