Wall clock time and date at job start Tue Mar 31 2020 00:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47061 * 2 1 4 4 C 1.35427 * 117.00268 * 179.97438 * 3 2 1 5 5 N 1.32235 * 119.79579 * 359.97438 * 4 3 2 6 6 C 1.31885 * 121.80018 * 180.02562 * 5 4 3 7 7 C 1.50705 * 119.40693 * 180.02562 * 6 5 4 8 8 C 1.38355 * 121.18620 * 359.97438 * 6 5 4 9 9 C 1.38344 * 119.45351 * 359.74351 * 8 6 5 10 10 C 1.39986 * 118.35070 * 0.50227 * 9 8 6 11 11 C 1.47528 * 120.59721 * 179.77954 * 10 9 8 12 12 O 1.21587 * 119.99964 * 179.71654 * 11 10 9 13 13 N 1.34780 * 119.99667 * 359.71986 * 11 10 9 14 14 C 1.46495 * 119.99388 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47981 * 34.99768 * 14 13 11 16 16 C 1.53002 * 109.46950 * 274.99377 * 14 13 11 17 17 C 1.50707 * 109.46964 * 155.00106 * 14 13 11 18 18 H 1.07997 * 120.00412 * 34.99750 * 17 14 13 19 19 C 1.37878 * 119.99902 * 215.00059 * 17 14 13 20 20 N 1.31508 * 120.00170 * 184.90962 * 19 17 14 21 21 Si 1.86807 * 119.99876 * 4.91088 * 19 17 14 22 22 H 1.48503 * 109.47044 * 84.83582 * 21 19 17 23 23 H 1.48503 * 109.47110 * 204.83208 * 21 19 17 24 24 H 1.48499 * 109.47347 * 324.83521 * 21 19 17 25 25 H 1.08998 * 109.46992 * 60.00007 * 1 2 3 26 26 H 1.08997 * 109.46750 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46783 * 299.99976 * 1 2 3 28 28 H 1.09001 * 109.47289 * 240.00579 * 2 1 3 29 29 H 1.08998 * 109.46992 * 119.99993 * 2 1 3 30 30 H 1.08995 * 109.46869 * 89.99908 * 7 6 5 31 31 H 1.09004 * 109.46746 * 209.99371 * 7 6 5 32 32 H 1.08994 * 109.47129 * 329.99331 * 7 6 5 33 33 H 1.07995 * 120.27450 * 180.02562 * 8 6 5 34 34 H 1.08004 * 120.82055 * 180.25262 * 9 8 6 35 35 H 0.97000 * 120.00441 * 359.97438 * 13 11 10 36 36 H 1.09006 * 109.47034 * 175.03948 * 16 14 13 37 37 H 1.08993 * 109.47019 * 55.04390 * 16 14 13 38 38 H 1.09001 * 109.47478 * 295.03781 * 16 14 13 39 39 H 0.96999 * 120.00090 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0015 6 6 5.4635 0.6003 0.0026 7 6 6.3265 -0.6351 0.0031 8 6 6.0626 1.8475 0.0022 9 6 5.2713 2.9822 -0.0048 10 6 3.8806 2.8229 -0.0004 11 6 2.9900 3.9991 -0.0026 12 8 1.7835 3.8481 -0.0039 13 7 3.5138 5.2409 -0.0031 14 6 2.6294 6.4088 -0.0047 15 1 1.7385 6.1908 0.5841 16 6 2.2225 6.7384 -1.4423 17 6 3.3523 7.5871 0.5954 18 1 4.4129 7.7098 0.4331 19 6 2.6596 8.5086 1.3518 20 7 3.2685 9.5868 1.7946 21 14 0.8560 8.2253 1.7477 22 1 0.7429 7.3606 2.9497 23 1 0.1966 9.5293 2.0122 24 1 0.1948 7.5609 0.5959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 6.5353 -0.9328 -1.0244 31 1 7.2638 -0.4233 0.5177 32 1 5.8046 -1.4426 0.5165 33 1 7.1390 1.9344 0.0026 34 1 5.7156 3.9666 -0.0094 35 1 4.4763 5.3614 -0.0017 36 1 1.4960 7.5510 -1.4371 37 1 1.7786 5.8572 -1.9054 38 1 3.1030 7.0420 -2.0086 39 1 2.7810 10.2352 2.3264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276658865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:55 Heat of formation + Delta-G solvation = -48.464586 kcal Electronic energy + Delta-G solvation = -21634.517333 eV Core-core repulsion = 18349.371498 eV Total energy + Delta-G solvation = -3285.145835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81543 -38.56941 -38.08925 -34.81811 -33.30003 -32.42602 -32.06713 -30.92338 -29.72041 -27.70685 -25.29158 -23.90873 -23.21107 -22.25855 -21.07019 -19.55400 -18.38464 -17.74754 -16.64904 -16.29722 -16.27463 -15.09858 -14.64658 -14.55413 -14.33345 -13.98947 -13.90514 -13.62079 -13.07527 -12.85919 -12.64030 -12.52087 -12.45318 -12.33457 -12.23552 -11.94847 -11.45648 -11.41817 -11.07792 -10.78862 -10.68742 -10.54564 -9.90458 -9.86488 -9.83323 -9.17932 -9.07284 -8.68354 -8.41687 -7.99720 -6.22422 -4.26034 0.77581 1.26623 3.06027 3.26602 3.29884 3.36220 3.44471 3.85790 4.07515 4.17102 4.34639 4.61287 4.89278 5.01163 5.01562 5.07827 5.15451 5.19524 5.34550 5.34951 5.36302 5.51842 5.65715 5.78291 5.85095 5.88317 6.04526 6.10910 6.35566 6.40271 6.56603 6.71240 6.97379 7.21595 7.34621 7.41181 7.58214 7.78118 8.16414 8.59165 8.78016 9.02990 9.40102 10.89238 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.005017 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.844943 B = 5579.689627 C = 6596.172793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.266 6.266 4 C 0.374 3.626 5 N -0.550 5.550 6 C 0.181 3.819 7 C -0.105 4.105 8 C -0.221 4.221 9 C -0.007 4.007 10 C -0.204 4.204 11 C 0.549 3.451 12 O -0.534 6.534 13 N -0.701 5.701 14 C 0.232 3.768 15 H 0.051 0.949 16 C -0.147 4.147 17 C -0.530 4.530 18 H 0.079 0.921 19 C 0.082 3.918 20 N -0.889 5.889 21 Si 0.874 3.126 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.260 1.260 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.390 0.610 36 H 0.052 0.948 37 H 0.029 0.971 38 H 0.046 0.954 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -19.535 -4.017 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.170 6.170 4 C 0.193 3.807 5 N -0.275 5.275 6 C 0.043 3.957 7 C -0.162 4.162 8 C -0.241 4.241 9 C -0.033 4.033 10 C -0.211 4.211 11 C 0.333 3.667 12 O -0.412 6.412 13 N -0.350 5.350 14 C 0.130 3.870 15 H 0.069 0.931 16 C -0.206 4.206 17 C -0.568 4.568 18 H 0.097 0.903 19 C -0.123 4.123 20 N -0.526 5.526 21 Si 0.700 3.300 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.184 1.184 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.224 0.776 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.033 -20.050 -3.907 20.651 hybrid contribution 0.071 0.694 0.311 0.764 sum 3.104 -19.356 -3.596 19.930 Atomic orbital electron populations 1.21780 0.92973 1.02256 1.03870 1.22641 0.95139 0.81653 1.01957 1.86580 1.15543 1.29279 1.85619 1.19779 0.84447 0.88416 0.88033 1.67238 1.05960 1.32688 1.21648 1.21092 0.88834 0.95221 0.90515 1.20775 0.97963 0.94223 1.03282 1.21697 1.01411 0.92252 1.08767 1.21726 0.91360 1.00010 0.90191 1.20358 0.94480 0.92988 1.13244 1.17847 0.87755 0.82979 0.78078 1.90769 1.14223 1.85951 1.50298 1.46545 1.10608 1.05373 1.72522 1.19131 0.91064 0.83041 0.93749 0.93130 1.22214 1.00279 0.99353 0.98763 1.21005 0.97397 1.05883 1.32506 0.90341 1.24928 0.98337 0.94631 0.94355 1.69877 1.37220 1.10148 1.35325 0.86900 0.85391 0.77606 0.80077 1.19832 1.21200 1.18399 0.91489 0.90675 0.91451 0.91905 0.91882 0.90062 0.90252 0.90419 0.84137 0.83436 0.77628 0.92897 0.95156 0.93444 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.82 6.03 37.16 0.22 1.04 16 3 O -0.27 -4.76 8.22 -39.74 -0.33 -5.09 16 4 C 0.37 6.40 7.51 -16.61 -0.12 6.28 16 5 N -0.55 -8.00 9.11 -9.21 -0.08 -8.08 16 6 C 0.18 2.13 6.78 -82.52 -0.56 1.57 16 7 C -0.11 -0.80 10.16 36.01 0.37 -0.43 16 8 C -0.22 -2.45 9.71 -39.50 -0.38 -2.83 16 9 C -0.01 -0.10 9.64 -38.89 -0.37 -0.47 16 10 C -0.20 -3.56 5.90 -104.69 -0.62 -4.17 16 11 C 0.55 11.60 7.74 -12.47 -0.10 11.50 16 12 O -0.53 -13.13 14.86 -16.48 -0.24 -13.37 16 13 N -0.70 -14.70 5.02 -55.98 -0.28 -14.98 16 14 C 0.23 5.66 2.22 -69.08 -0.15 5.51 16 15 H 0.05 1.35 4.73 -51.93 -0.25 1.10 16 16 C -0.15 -3.31 9.47 37.16 0.35 -2.96 16 17 C -0.53 -14.31 9.05 -34.44 -0.31 -14.63 16 18 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 20 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 21 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.42 6.82 56.52 0.39 -6.04 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 29 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 1.68 6.52 -52.48 -0.34 1.33 16 35 H 0.39 7.04 6.69 -40.82 -0.27 6.77 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -33.59 330.91 -6.66 -40.25 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.50 Total: 3.19 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.40 Total: 1.28 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.41 Total: -48.51 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.57 Total: -18.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.59 -6.66 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276658865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.216 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds