Wall clock time and date at job start Tue Mar 31 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47061 * 2 1 4 4 C 1.35427 * 117.00268 * 179.97438 * 3 2 1 5 5 N 1.32235 * 119.79579 * 359.97438 * 4 3 2 6 6 C 1.31885 * 121.80018 * 180.02562 * 5 4 3 7 7 C 1.50705 * 119.40693 * 180.02562 * 6 5 4 8 8 C 1.38355 * 121.18620 * 359.97438 * 6 5 4 9 9 C 1.38344 * 119.45351 * 359.74351 * 8 6 5 10 10 C 1.39986 * 118.35070 * 0.50227 * 9 8 6 11 11 C 1.47528 * 120.59721 * 179.77954 * 10 9 8 12 12 O 1.21587 * 119.99964 * 179.71654 * 11 10 9 13 13 N 1.34780 * 119.99667 * 359.71986 * 11 10 9 14 14 C 1.46495 * 119.99388 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47981 * 34.99768 * 14 13 11 16 16 C 1.53002 * 109.46950 * 274.99377 * 14 13 11 17 17 C 1.50707 * 109.46964 * 155.00106 * 14 13 11 18 18 H 1.07997 * 120.00412 * 34.99750 * 17 14 13 19 19 C 1.37878 * 119.99902 * 215.00059 * 17 14 13 20 20 N 1.31508 * 120.00170 * 184.90962 * 19 17 14 21 21 Si 1.86807 * 119.99876 * 4.91088 * 19 17 14 22 22 H 1.48503 * 109.47044 * 84.83582 * 21 19 17 23 23 H 1.48503 * 109.47110 * 204.83208 * 21 19 17 24 24 H 1.48499 * 109.47347 * 324.83521 * 21 19 17 25 25 H 1.08998 * 109.46992 * 60.00007 * 1 2 3 26 26 H 1.08997 * 109.46750 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46783 * 299.99976 * 1 2 3 28 28 H 1.09001 * 109.47289 * 240.00579 * 2 1 3 29 29 H 1.08998 * 109.46992 * 119.99993 * 2 1 3 30 30 H 1.08995 * 109.46869 * 89.99908 * 7 6 5 31 31 H 1.09004 * 109.46746 * 209.99371 * 7 6 5 32 32 H 1.08994 * 109.47129 * 329.99331 * 7 6 5 33 33 H 1.07995 * 120.27450 * 180.02562 * 8 6 5 34 34 H 1.08004 * 120.82055 * 180.25262 * 9 8 6 35 35 H 0.97000 * 120.00441 * 359.97438 * 13 11 10 36 36 H 1.09006 * 109.47034 * 175.03948 * 16 14 13 37 37 H 1.08993 * 109.47019 * 55.04390 * 16 14 13 38 38 H 1.09001 * 109.47478 * 295.03781 * 16 14 13 39 39 H 0.96999 * 120.00090 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0015 6 6 5.4635 0.6003 0.0026 7 6 6.3265 -0.6351 0.0031 8 6 6.0626 1.8475 0.0022 9 6 5.2713 2.9822 -0.0048 10 6 3.8806 2.8229 -0.0004 11 6 2.9900 3.9991 -0.0026 12 8 1.7835 3.8481 -0.0039 13 7 3.5138 5.2409 -0.0031 14 6 2.6294 6.4088 -0.0047 15 1 1.7385 6.1908 0.5841 16 6 2.2225 6.7384 -1.4423 17 6 3.3523 7.5871 0.5954 18 1 4.4129 7.7098 0.4331 19 6 2.6596 8.5086 1.3518 20 7 3.2685 9.5868 1.7946 21 14 0.8560 8.2253 1.7477 22 1 0.7429 7.3606 2.9497 23 1 0.1966 9.5293 2.0122 24 1 0.1948 7.5609 0.5959 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 6.5353 -0.9328 -1.0244 31 1 7.2638 -0.4233 0.5177 32 1 5.8046 -1.4426 0.5165 33 1 7.1390 1.9344 0.0026 34 1 5.7156 3.9666 -0.0094 35 1 4.4763 5.3614 -0.0017 36 1 1.4960 7.5510 -1.4371 37 1 1.7786 5.8572 -1.9054 38 1 3.1030 7.0420 -2.0086 39 1 2.7810 10.2352 2.3264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276658865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:53 Heat of formation + Delta-G solvation = -72.331845 kcal Electronic energy + Delta-G solvation = -21635.552295 eV Core-core repulsion = 18349.371498 eV Total energy + Delta-G solvation = -3286.180797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.96991 -40.17612 -39.19744 -36.69502 -34.65887 -34.06333 -33.25746 -31.89808 -31.41972 -28.72944 -27.33931 -25.01834 -24.34435 -23.31988 -22.65893 -21.28148 -19.78809 -19.21876 -18.13716 -17.80800 -17.40160 -16.84161 -16.14769 -15.83797 -15.44781 -15.32015 -15.11829 -15.03208 -14.59603 -14.31639 -14.07671 -13.94832 -13.51288 -13.32141 -13.27415 -13.07685 -12.98884 -12.81664 -12.79740 -12.47403 -12.43723 -11.88649 -11.68748 -11.25906 -11.09706 -10.94470 -10.86228 -10.56093 -9.87969 -9.41986 -8.40099 -6.45752 -0.34335 0.22772 1.27873 1.32618 1.43840 1.93579 1.99742 2.26164 2.35037 2.78610 3.00600 3.15727 3.71809 3.80616 3.91286 4.03228 4.12159 4.24800 4.32552 4.39494 4.48934 4.69465 4.73375 4.78773 4.81331 4.83713 4.88828 4.94564 5.01759 5.09497 5.16922 5.18155 5.35048 5.44222 5.51015 5.71816 6.11455 6.26401 6.58186 6.71701 6.88996 7.20280 7.43279 8.74638 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.005017 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.844943 B = 5579.689627 C = 6596.172793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.300 6.300 4 C 0.356 3.644 5 N -0.557 5.557 6 C 0.182 3.818 7 C -0.103 4.103 8 C -0.207 4.207 9 C -0.003 4.003 10 C -0.241 4.241 11 C 0.548 3.452 12 O -0.578 6.578 13 N -0.698 5.698 14 C 0.235 3.765 15 H 0.028 0.972 16 C -0.140 4.140 17 C -0.525 4.525 18 H 0.062 0.938 19 C 0.038 3.962 20 N -0.927 5.927 21 Si 0.922 3.078 22 H -0.277 1.277 23 H -0.274 1.274 24 H -0.259 1.259 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.404 0.596 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.060 0.940 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -21.668 -4.440 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.206 6.206 4 C 0.177 3.823 5 N -0.283 5.283 6 C 0.044 3.956 7 C -0.159 4.159 8 C -0.227 4.227 9 C -0.029 4.029 10 C -0.247 4.247 11 C 0.336 3.664 12 O -0.459 6.459 13 N -0.349 5.349 14 C 0.131 3.869 15 H 0.045 0.955 16 C -0.199 4.199 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.163 4.163 20 N -0.565 5.565 21 Si 0.747 3.253 22 H -0.203 1.203 23 H -0.199 1.199 24 H -0.183 1.183 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.203 0.797 34 H 0.183 0.817 35 H 0.240 0.760 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.795 -22.195 -4.338 23.118 hybrid contribution -0.305 1.201 0.418 1.307 sum 4.490 -20.995 -3.920 21.824 Atomic orbital electron populations 1.21814 0.91821 1.04112 1.02653 1.22867 0.96071 0.80234 1.02538 1.86540 1.16533 1.31663 1.85858 1.19950 0.84615 0.88990 0.88792 1.67359 1.07180 1.31584 1.22166 1.22009 0.88285 0.97442 0.87841 1.20943 0.98150 0.92068 1.04780 1.22175 1.03310 0.90883 1.06325 1.22000 0.89818 1.01931 0.89124 1.20124 0.95588 0.91468 1.17560 1.18359 0.87773 0.83680 0.76604 1.90728 1.16309 1.86621 1.52262 1.46244 1.10976 1.04780 1.72877 1.18907 0.90431 0.83240 0.94291 0.95456 1.22102 1.00787 0.99358 0.97621 1.21157 0.96748 1.06466 1.31910 0.92008 1.25526 1.01548 0.94573 0.94664 1.69956 1.38705 1.11129 1.36722 0.86126 0.81815 0.77748 0.79563 1.20302 1.19946 1.18308 0.92531 0.87219 0.92758 0.91091 0.91319 0.88280 0.87327 0.90428 0.79747 0.81737 0.76004 0.93208 0.94830 0.92074 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 10.28 71.98 0.74 -2.57 16 2 C 0.06 1.53 6.03 71.98 0.43 1.96 16 3 O -0.30 -11.07 8.22 -66.41 -0.55 -11.61 16 4 C 0.36 12.20 7.51 85.13 0.64 12.84 16 5 N -0.56 -15.34 9.11 -296.06 -2.70 -18.04 16 6 C 0.18 3.67 6.78 42.58 0.29 3.96 16 7 C -0.10 -1.09 10.16 71.24 0.72 -0.37 16 8 C -0.21 -3.78 9.71 22.32 0.22 -3.57 16 9 C 0.00 -0.08 9.64 22.72 0.22 0.14 16 10 C -0.24 -8.34 5.90 -19.91 -0.12 -8.46 16 11 C 0.55 23.61 7.74 86.69 0.67 24.28 16 12 O -0.58 -29.42 14.86 16.83 0.25 -29.17 16 13 N -0.70 -29.43 5.02 -449.28 -2.26 -31.69 16 14 C 0.23 11.53 2.22 44.25 0.10 11.63 16 15 H 0.03 1.48 4.73 -2.39 -0.01 1.47 16 16 C -0.14 -6.25 9.47 71.98 0.68 -5.57 16 17 C -0.52 -28.58 9.05 25.60 0.23 -28.35 16 18 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 19 C 0.04 2.14 5.47 84.66 0.46 2.60 16 20 N -0.93 -55.16 13.96 21.45 0.30 -54.86 16 21 Si 0.92 45.54 26.99 68.60 1.85 47.39 16 22 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.26 -12.64 6.82 99.48 0.68 -11.96 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 29 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.11 0.58 8.07 -2.38 -0.02 0.56 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.17 3.35 6.52 -2.91 -0.02 3.33 16 35 H 0.40 14.43 6.69 -92.71 -0.62 13.81 16 36 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -75.07 330.91 2.60 -72.47 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.41 Total: 16.98 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.29 Total: 8.54 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -4.66 Total: -104.59 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.30 Total: -40.79 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.85 Total: 47.39 kcal Total: -75.07 2.60 -72.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276658865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.142 kcal (2) G-P(sol) polarization free energy of solvation -75.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds