Wall clock time and date at job start Tue Mar 31 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47662 * 2 1 4 4 C 1.35420 * 117.00385 * 180.02562 * 3 2 1 5 5 N 1.32239 * 119.79890 * 0.02562 * 4 3 2 6 6 C 1.31883 * 121.80031 * 179.97438 * 5 4 3 7 7 C 1.50694 * 119.40743 * 179.97438 * 6 5 4 8 8 C 1.38361 * 121.18489 * 0.27364 * 6 5 4 9 9 C 1.38335 * 119.45813 * 359.45299 * 8 6 5 10 10 C 1.39992 * 118.34861 * 0.52987 * 9 8 6 11 11 C 1.47524 * 120.59860 * 179.71039 * 10 9 8 12 12 O 1.21594 * 120.00050 * 146.27660 * 11 10 9 13 13 N 1.34781 * 119.99608 * 326.27432 * 11 10 9 14 14 C 1.46490 * 120.00425 * 5.38905 * 13 11 10 15 15 C 1.46497 * 119.99436 * 185.39100 * 13 11 10 16 16 C 1.50702 * 109.47447 * 90.00056 * 15 13 11 17 17 H 1.08003 * 119.99583 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00610 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00343 * 180.02562 * 18 16 15 20 20 Si 1.86810 * 119.99565 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47227 * 89.99977 * 20 18 16 22 22 H 1.48505 * 109.46540 * 210.00087 * 20 18 16 23 23 H 1.48495 * 109.47038 * 329.99478 * 20 18 16 24 24 H 1.08999 * 109.46829 * 300.00092 * 1 2 3 25 25 H 1.08996 * 109.47291 * 59.99562 * 1 2 3 26 26 H 1.09002 * 109.47711 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46829 * 239.99908 * 2 1 3 28 28 H 1.08996 * 109.47291 * 120.00438 * 2 1 3 29 29 H 1.09007 * 109.46868 * 90.00350 * 7 6 5 30 30 H 1.09002 * 109.47417 * 330.00111 * 7 6 5 31 31 H 1.09002 * 109.47336 * 210.00215 * 7 6 5 32 32 H 1.07998 * 120.26728 * 179.72223 * 8 6 5 33 33 H 1.08001 * 120.82830 * 180.26445 * 9 8 6 34 34 H 1.09005 * 109.47042 * 95.84156 * 14 13 11 35 35 H 1.09000 * 109.47595 * 215.84672 * 14 13 11 36 36 H 1.08999 * 109.47288 * 335.84571 * 14 13 11 37 37 H 1.09005 * 109.47144 * 210.00020 * 15 13 11 38 38 H 1.08997 * 109.47780 * 330.00232 * 15 13 11 39 39 H 0.96999 * 119.99819 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5246 -0.0005 5 7 4.1508 0.4730 -0.0015 6 6 5.4635 0.6000 -0.0026 7 6 6.3264 -0.6354 -0.0031 8 6 6.0626 1.8472 0.0029 9 6 5.2715 2.9820 -0.0018 10 6 3.8807 2.8227 -0.0007 11 6 2.9902 3.9989 0.0009 12 8 1.9244 3.9553 -0.5829 13 7 3.3580 5.1217 0.6494 14 6 4.6898 5.2166 1.2521 15 6 2.4258 6.2471 0.7516 16 6 1.5950 6.0996 2.0003 17 1 1.7466 5.2523 2.6527 18 6 0.6421 7.0466 2.3104 19 7 -0.0825 6.9180 3.4003 20 14 0.3804 8.5124 1.1823 21 1 -0.6447 8.1752 0.1623 22 1 -0.0805 9.6760 1.9816 23 1 1.6585 8.8512 0.5064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 6.5336 -0.9334 -1.0310 30 1 5.8052 -1.4429 0.5112 31 1 7.2645 -0.4236 0.5100 32 1 7.1391 1.9339 0.0065 33 1 5.7158 3.9664 -0.0019 34 1 5.3659 5.7208 0.5615 35 1 4.6289 5.7843 2.1805 36 1 5.0656 4.2154 1.4625 37 1 2.9867 7.1807 0.7967 38 1 1.7720 6.2579 -0.1204 39 1 -0.7526 7.5845 3.6186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276882101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:23 Heat of formation + Delta-G solvation = -19.236575 kcal Electronic energy + Delta-G solvation = -21917.538677 eV Core-core repulsion = 18633.660264 eV Total energy + Delta-G solvation = -3283.878413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.86200 -38.66520 -38.02530 -34.97734 -33.36816 -32.41321 -32.07902 -30.84294 -28.76239 -27.71032 -26.01379 -23.95712 -23.19109 -22.19659 -21.79806 -19.24556 -18.07278 -16.95392 -16.77133 -16.53550 -16.17951 -15.24189 -14.82889 -14.54338 -14.29905 -13.97509 -13.91708 -13.67400 -13.03284 -13.02867 -12.53910 -12.47912 -12.38234 -12.32950 -12.14798 -11.90452 -11.72093 -11.37222 -11.27928 -10.93425 -10.56805 -10.49921 -10.15669 -9.82798 -9.69109 -9.49523 -8.96495 -8.56313 -8.32515 -7.67106 -6.05982 -4.04765 0.86974 1.29354 3.12002 3.31434 3.32562 3.37311 3.39438 3.70068 4.03951 4.14930 4.42096 4.62463 4.91517 5.00522 5.08968 5.13615 5.22770 5.26135 5.34570 5.37868 5.38967 5.47750 5.56624 5.73790 5.76788 5.80871 5.90398 5.98614 6.03095 6.16307 6.24359 6.42285 6.70969 6.97423 7.33967 7.42410 7.62977 7.83854 8.24101 8.49765 8.95289 9.01149 9.54063 11.07468 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.005360 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.507722 B = 5223.072620 C = 6212.250169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.273 6.273 4 C 0.375 3.625 5 N -0.548 5.548 6 C 0.179 3.821 7 C -0.105 4.105 8 C -0.225 4.225 9 C -0.021 4.021 10 C -0.201 4.201 11 C 0.560 3.440 12 O -0.520 6.520 13 N -0.592 5.592 14 C 0.067 3.933 15 C 0.217 3.783 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.020 -12.985 -6.735 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.177 6.177 4 C 0.195 3.805 5 N -0.274 5.274 6 C 0.042 3.958 7 C -0.162 4.162 8 C -0.246 4.246 9 C -0.046 4.046 10 C -0.207 4.207 11 C 0.346 3.654 12 O -0.396 6.396 13 N -0.324 5.324 14 C -0.077 4.077 15 C 0.096 3.904 16 C -0.568 4.568 17 H 0.092 0.908 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.190 1.190 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.644 -13.521 -6.931 19.767 hybrid contribution 0.207 1.412 -0.280 1.454 sum 12.852 -12.109 -7.211 19.073 Atomic orbital electron populations 1.21800 0.92858 1.02312 1.04121 1.22634 0.95232 0.81258 1.01917 1.86512 1.15675 1.29858 1.85668 1.19698 0.84431 0.88298 0.88027 1.67234 1.05944 1.32607 1.21598 1.21078 0.88845 0.95206 0.90707 1.20766 0.97917 0.94294 1.03215 1.21682 1.01227 0.92302 1.09352 1.22140 0.91374 1.00478 0.90654 1.20178 0.94548 0.93080 1.12883 1.17660 0.85669 0.82022 0.80089 1.90771 1.23065 1.82010 1.43786 1.47683 1.15370 1.16096 1.53275 1.22233 0.84465 1.02068 0.98938 1.19685 0.88771 0.83371 0.98551 1.21337 1.18622 1.10191 1.06601 0.90771 1.24848 0.95131 0.97908 0.95060 1.69900 1.23031 1.35766 1.24916 0.86847 0.79280 0.82428 0.81120 1.19850 1.21078 1.19041 0.91247 0.91388 0.90618 0.91868 0.91837 0.90141 0.90409 0.90325 0.84246 0.82472 0.93140 0.90627 0.90868 0.95070 0.94247 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 37.15 0.38 -1.64 16 2 C 0.07 0.96 6.03 37.15 0.22 1.19 16 3 O -0.27 -5.36 8.74 -35.95 -0.31 -5.68 16 4 C 0.38 6.89 7.48 -16.61 -0.12 6.77 16 5 N -0.55 -8.43 9.11 -9.21 -0.08 -8.51 16 6 C 0.18 2.18 6.78 -82.53 -0.56 1.62 16 7 C -0.10 -0.82 10.16 36.00 0.37 -0.46 16 8 C -0.23 -2.49 9.71 -39.50 -0.38 -2.88 16 9 C -0.02 -0.29 7.53 -38.89 -0.29 -0.58 16 10 C -0.20 -3.68 5.47 -104.69 -0.57 -4.25 16 11 C 0.56 12.64 7.30 -12.47 -0.09 12.55 16 12 O -0.52 -13.85 15.47 -12.72 -0.20 -14.05 16 13 N -0.59 -12.87 2.86 -184.20 -0.53 -13.40 16 14 C 0.07 1.05 8.86 59.84 0.53 1.58 16 15 C 0.22 5.46 4.30 -5.19 -0.02 5.44 16 16 C -0.53 -15.59 9.94 -34.44 -0.34 -15.93 16 17 H 0.07 2.41 8.06 -52.48 -0.42 1.99 16 18 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 20 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 28 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.74 5.10 -52.49 -0.27 1.47 16 34 H 0.05 0.63 7.57 -51.93 -0.39 0.24 16 35 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.07 1.02 4.61 -51.93 -0.24 0.78 16 37 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 38 H 0.04 1.06 6.78 -51.93 -0.35 0.71 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -36.74 326.36 -6.51 -43.25 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.43 Total: -1.88 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.98 Total: 5.46 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.16 Total: -49.22 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.51 Total: -19.73 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.74 -6.51 -43.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276882101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.016 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds