Wall clock time and date at job start Tue Mar 31 2020 00:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47662 * 2 1 4 4 C 1.35420 * 117.00385 * 180.02562 * 3 2 1 5 5 N 1.32239 * 119.79890 * 0.02562 * 4 3 2 6 6 C 1.31883 * 121.80031 * 179.97438 * 5 4 3 7 7 C 1.50694 * 119.40743 * 179.97438 * 6 5 4 8 8 C 1.38361 * 121.18489 * 0.27364 * 6 5 4 9 9 C 1.38335 * 119.45813 * 359.45299 * 8 6 5 10 10 C 1.39992 * 118.34861 * 0.52987 * 9 8 6 11 11 C 1.47524 * 120.59860 * 179.71039 * 10 9 8 12 12 O 1.21594 * 120.00050 * 146.27660 * 11 10 9 13 13 N 1.34781 * 119.99608 * 326.27432 * 11 10 9 14 14 C 1.46490 * 120.00425 * 5.38905 * 13 11 10 15 15 C 1.46497 * 119.99436 * 185.39100 * 13 11 10 16 16 C 1.50702 * 109.47447 * 90.00056 * 15 13 11 17 17 H 1.08003 * 119.99583 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00610 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00343 * 180.02562 * 18 16 15 20 20 Si 1.86810 * 119.99565 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47227 * 89.99977 * 20 18 16 22 22 H 1.48505 * 109.46540 * 210.00087 * 20 18 16 23 23 H 1.48495 * 109.47038 * 329.99478 * 20 18 16 24 24 H 1.08999 * 109.46829 * 300.00092 * 1 2 3 25 25 H 1.08996 * 109.47291 * 59.99562 * 1 2 3 26 26 H 1.09002 * 109.47711 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46829 * 239.99908 * 2 1 3 28 28 H 1.08996 * 109.47291 * 120.00438 * 2 1 3 29 29 H 1.09007 * 109.46868 * 90.00350 * 7 6 5 30 30 H 1.09002 * 109.47417 * 330.00111 * 7 6 5 31 31 H 1.09002 * 109.47336 * 210.00215 * 7 6 5 32 32 H 1.07998 * 120.26728 * 179.72223 * 8 6 5 33 33 H 1.08001 * 120.82830 * 180.26445 * 9 8 6 34 34 H 1.09005 * 109.47042 * 95.84156 * 14 13 11 35 35 H 1.09000 * 109.47595 * 215.84672 * 14 13 11 36 36 H 1.08999 * 109.47288 * 335.84571 * 14 13 11 37 37 H 1.09005 * 109.47144 * 210.00020 * 15 13 11 38 38 H 1.08997 * 109.47780 * 330.00232 * 15 13 11 39 39 H 0.96999 * 119.99819 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5246 -0.0005 5 7 4.1508 0.4730 -0.0015 6 6 5.4635 0.6000 -0.0026 7 6 6.3264 -0.6354 -0.0031 8 6 6.0626 1.8472 0.0029 9 6 5.2715 2.9820 -0.0018 10 6 3.8807 2.8227 -0.0007 11 6 2.9902 3.9989 0.0009 12 8 1.9244 3.9553 -0.5829 13 7 3.3580 5.1217 0.6494 14 6 4.6898 5.2166 1.2521 15 6 2.4258 6.2471 0.7516 16 6 1.5950 6.0996 2.0003 17 1 1.7466 5.2523 2.6527 18 6 0.6421 7.0466 2.3104 19 7 -0.0825 6.9180 3.4003 20 14 0.3804 8.5124 1.1823 21 1 -0.6447 8.1752 0.1623 22 1 -0.0805 9.6760 1.9816 23 1 1.6585 8.8512 0.5064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 6.5336 -0.9334 -1.0310 30 1 5.8052 -1.4429 0.5112 31 1 7.2645 -0.4236 0.5100 32 1 7.1391 1.9339 0.0065 33 1 5.7158 3.9664 -0.0019 34 1 5.3659 5.7208 0.5615 35 1 4.6289 5.7843 2.1805 36 1 5.0656 4.2154 1.4625 37 1 2.9867 7.1807 0.7967 38 1 1.7720 6.2579 -0.1204 39 1 -0.7526 7.5845 3.6186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276882101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:20 Heat of formation + Delta-G solvation = -46.762176 kcal Electronic energy + Delta-G solvation = -21918.732277 eV Core-core repulsion = 18633.660264 eV Total energy + Delta-G solvation = -3285.072013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07985 -40.25400 -39.23559 -36.72834 -35.01061 -34.04697 -33.28162 -31.91050 -30.54560 -28.89864 -27.48718 -25.34372 -24.54581 -23.58755 -23.04191 -20.83009 -19.28276 -19.16719 -18.17722 -17.91576 -17.43975 -16.92370 -16.24133 -16.04734 -15.64223 -15.24400 -15.12527 -15.02061 -14.60794 -14.22749 -14.02818 -13.80260 -13.63566 -13.56694 -13.32444 -13.10680 -12.98006 -12.91311 -12.62584 -12.49365 -12.36945 -12.05660 -11.77030 -11.69057 -11.12264 -10.86078 -10.82197 -10.46801 -9.58776 -9.32913 -8.35760 -6.41752 -0.27181 0.22469 1.31636 1.37081 1.45295 1.78735 2.00771 2.24715 2.30272 2.73278 2.98450 3.10392 3.64271 3.73119 3.89167 3.98869 4.09112 4.18872 4.27776 4.32529 4.40200 4.57589 4.70062 4.75401 4.76030 4.83890 4.84707 4.89118 4.91644 4.96460 5.03009 5.14111 5.18540 5.43039 5.52525 5.57103 6.20974 6.24967 6.57723 6.59318 6.77235 7.17656 7.34531 8.81628 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.005360 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.507722 B = 5223.072620 C = 6212.250169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.316 6.316 4 C 0.349 3.651 5 N -0.557 5.557 6 C 0.176 3.824 7 C -0.102 4.102 8 C -0.205 4.205 9 C -0.013 4.013 10 C -0.239 4.239 11 C 0.551 3.449 12 O -0.581 6.581 13 N -0.601 5.601 14 C 0.059 3.941 15 C 0.225 3.775 16 C -0.540 4.540 17 H 0.022 0.978 18 C 0.011 3.989 19 N -0.946 5.946 20 Si 0.951 3.049 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.234 1.234 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.193 0.807 33 H 0.185 0.815 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.961 -13.104 -7.918 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.222 6.222 4 C 0.170 3.830 5 N -0.283 5.283 6 C 0.038 3.962 7 C -0.159 4.159 8 C -0.224 4.224 9 C -0.038 4.038 10 C -0.245 4.245 11 C 0.340 3.660 12 O -0.462 6.462 13 N -0.331 5.331 14 C -0.082 4.082 15 C 0.103 3.897 16 C -0.578 4.578 17 H 0.040 0.960 18 C -0.187 4.187 19 N -0.586 5.586 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.197 1.197 23 H -0.157 1.157 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.210 0.790 33 H 0.202 0.798 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.658 -13.654 -8.093 23.009 hybrid contribution -0.898 1.254 0.158 1.550 sum 15.760 -12.399 -7.935 21.566 Atomic orbital electron populations 1.21840 0.92127 1.04263 1.02421 1.22833 0.95856 0.79954 1.02626 1.86465 1.17315 1.32232 1.86225 1.19930 0.84352 0.89209 0.89489 1.67330 1.07435 1.31425 1.22125 1.22067 0.88095 0.97804 0.88224 1.20938 0.98180 0.92016 1.04724 1.22243 1.03450 0.90600 1.06099 1.22473 0.89166 1.02858 0.89265 1.20022 0.96107 0.91151 1.17237 1.18409 0.85599 0.83074 0.78957 1.90708 1.25901 1.83096 1.46471 1.47781 1.16899 1.15134 1.53332 1.22612 0.82267 1.03903 0.99435 1.19378 0.89226 0.85902 0.95218 1.21542 1.20054 1.08642 1.07602 0.95969 1.25888 0.94435 1.01587 0.96758 1.70058 1.23967 1.37410 1.27156 0.85667 0.80373 0.78001 0.78606 1.20351 1.19687 1.15675 0.93338 0.92586 0.86757 0.90730 0.91275 0.88363 0.90758 0.86994 0.79006 0.79778 0.88489 0.91503 0.88806 0.92288 0.96243 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 10.28 71.98 0.74 -3.43 16 2 C 0.06 1.93 6.03 71.98 0.43 2.36 16 3 O -0.32 -13.37 8.74 -69.94 -0.61 -13.98 16 4 C 0.35 13.20 7.48 85.13 0.64 13.83 16 5 N -0.56 -16.64 9.11 -296.06 -2.70 -19.34 16 6 C 0.18 3.67 6.78 42.58 0.29 3.96 16 7 C -0.10 -1.12 10.16 71.23 0.72 -0.40 16 8 C -0.20 -3.54 9.71 22.32 0.22 -3.32 16 9 C -0.01 -0.31 7.53 22.72 0.17 -0.14 16 10 C -0.24 -8.83 5.47 -19.91 -0.11 -8.94 16 11 C 0.55 25.93 7.30 86.69 0.63 26.56 16 12 O -0.58 -33.15 15.47 13.20 0.20 -32.94 16 13 N -0.60 -26.40 2.86 -854.95 -2.44 -28.84 16 14 C 0.06 1.75 8.86 127.77 1.13 2.88 16 15 C 0.22 11.49 4.30 85.63 0.37 11.86 16 16 C -0.54 -33.28 9.94 25.60 0.25 -33.02 16 17 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 18 C 0.01 0.68 5.47 84.65 0.46 1.15 16 19 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 20 Si 0.95 45.52 27.47 68.60 1.88 47.40 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.23 -9.91 6.54 99.48 0.65 -9.26 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 28 H 0.07 1.99 8.10 -2.39 -0.02 1.98 16 29 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 0.56 8.07 -2.39 -0.02 0.54 16 32 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.19 3.25 5.10 -2.91 -0.01 3.24 16 34 H 0.10 1.99 7.57 -2.38 -0.02 1.97 16 35 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 36 H 0.09 2.38 4.61 -2.39 -0.01 2.36 16 37 H 0.06 2.68 7.13 -2.38 -0.02 2.66 16 38 H 0.02 1.07 6.78 -2.39 -0.02 1.06 16 39 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -89.54 326.36 3.58 -85.95 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.00 Total: 9.60 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.95 Total: 13.34 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -4.84 Total: -109.38 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.41 Total: -46.92 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -89.54 3.58 -85.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276882101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.191 kcal (2) G-P(sol) polarization free energy of solvation -89.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds