Wall clock time and date at job start Tue Mar 31 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.80032 * 0.02562 * 4 3 2 6 6 C 1.31876 * 121.80169 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40618 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18527 * 0.27617 * 6 5 4 9 9 C 1.38342 * 119.45889 * 359.45017 * 8 6 5 10 10 C 1.39983 * 118.34688 * 0.53683 * 9 8 6 11 11 C 1.47518 * 120.59941 * 179.70658 * 10 9 8 12 12 O 1.21586 * 120.00330 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99814 * 0.02562 * 11 10 9 14 14 C 1.46494 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47164 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47400 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00266 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46818 * 89.99838 * 20 18 16 22 22 H 1.48494 * 109.47202 * 209.99870 * 20 18 16 23 23 H 1.48503 * 109.47128 * 330.00176 * 20 18 16 24 24 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 25 25 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 26 26 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46976 * 240.00444 * 2 1 3 28 28 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 29 29 H 1.09002 * 109.47152 * 90.00070 * 7 6 5 30 30 H 1.09001 * 109.46980 * 330.00170 * 7 6 5 31 31 H 1.09004 * 109.47113 * 210.00151 * 7 6 5 32 32 H 1.08000 * 120.26943 * 179.72568 * 8 6 5 33 33 H 1.08000 * 120.82733 * 180.23468 * 9 8 6 34 34 H 0.96999 * 119.99622 * 0.02562 * 13 11 10 35 35 H 1.08995 * 109.47638 * 299.99977 * 14 13 11 36 36 H 1.09004 * 109.47233 * 60.00376 * 14 13 11 37 37 H 1.08995 * 109.47022 * 300.00596 * 15 14 13 38 38 H 1.09004 * 109.46541 * 60.00194 * 15 14 13 39 39 H 0.97000 * 120.00514 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1509 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0063 9 6 5.2715 2.9820 0.0005 10 6 3.8807 2.8228 0.0006 11 6 2.9903 3.9989 0.0011 12 8 1.7838 3.8480 0.0016 13 7 3.5141 5.2407 0.0010 14 6 2.6298 6.4087 0.0010 15 6 3.4720 7.6861 0.0016 16 6 2.5624 8.8875 0.0022 17 1 1.4907 8.7535 0.0026 18 6 3.0982 10.1579 0.0022 19 7 4.4032 10.3211 0.0012 20 14 1.9707 11.6473 0.0037 21 1 1.6731 12.0413 1.4042 22 1 2.6380 12.7740 -0.6964 23 1 0.7046 11.3103 -0.6954 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 6.5345 -0.9338 -1.0264 30 1 5.8048 -1.4427 0.5152 31 1 7.2641 -0.4235 0.5149 32 1 7.1391 1.9339 0.0107 33 1 5.7158 3.9664 0.0010 34 1 4.4766 5.3610 0.0003 35 1 2.0008 6.3882 -0.8889 36 1 2.0008 6.3883 0.8911 37 1 4.1007 7.7063 0.8917 38 1 4.1013 7.7067 -0.8883 39 1 4.7802 11.2148 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276894634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:27 Heat of formation + Delta-G solvation = -55.034889 kcal Electronic energy + Delta-G solvation = -20924.419807 eV Core-core repulsion = 17638.989062 eV Total energy + Delta-G solvation = -3285.430744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -40.96297 -38.75388 -38.21613 -34.81556 -33.44531 -32.74769 -32.30333 -31.02263 -29.67024 -27.94207 -24.95339 -23.87868 -23.07640 -22.36404 -21.07697 -20.22922 -18.43482 -17.35067 -16.83941 -16.39868 -16.28179 -14.93616 -14.87783 -14.73120 -14.45540 -14.41308 -14.11562 -13.96554 -13.31006 -12.96383 -12.85937 -12.72895 -12.54107 -12.37246 -12.28391 -12.02334 -11.55348 -11.18558 -11.02782 -10.78538 -10.63367 -10.32443 -10.05681 -9.98013 -9.75047 -9.41202 -9.15332 -8.61298 -8.46759 -8.27754 -6.08844 -4.11385 0.62094 1.13796 2.93414 3.08224 3.30276 3.36227 3.40348 3.60624 3.86259 3.99865 4.42726 4.48956 4.75143 4.88028 4.93300 4.96882 5.05057 5.24857 5.25765 5.27183 5.28377 5.32909 5.57405 5.67996 5.73976 5.77142 5.90121 6.02224 6.24346 6.37921 6.38081 6.76245 6.94259 7.21861 7.52442 7.62587 7.65308 7.89738 8.04120 8.29218 8.70011 8.94621 9.53404 11.02842 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.003480 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.113215 B = 8043.834241 C = 9212.593407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.267 6.267 4 C 0.376 3.624 5 N -0.549 5.549 6 C 0.185 3.815 7 C -0.106 4.106 8 C -0.221 4.221 9 C -0.006 4.006 10 C -0.209 4.209 11 C 0.554 3.446 12 O -0.525 6.525 13 N -0.720 5.720 14 C 0.124 3.876 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.394 0.606 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -22.479 -0.022 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.171 6.171 4 C 0.196 3.804 5 N -0.274 5.274 6 C 0.048 3.952 7 C -0.164 4.164 8 C -0.241 4.241 9 C -0.032 4.032 10 C -0.215 4.215 11 C 0.339 3.661 12 O -0.403 6.403 13 N -0.371 5.371 14 C 0.002 3.998 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.228 0.772 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.888 -23.053 -0.025 23.233 hybrid contribution 0.474 1.600 0.000 1.669 sum 3.361 -21.452 -0.025 21.714 Atomic orbital electron populations 1.21787 0.92864 1.02370 1.03887 1.22662 0.95207 0.81469 1.02064 1.86567 1.15483 1.29531 1.85536 1.19766 0.84517 0.88349 0.87765 1.67260 1.05976 1.32597 1.21604 1.21133 0.88818 0.95293 0.89983 1.20797 0.97982 0.94166 1.03427 1.21718 1.01540 0.92200 1.08625 1.21715 0.91289 1.00061 0.90123 1.20207 0.94365 0.92746 1.14225 1.17776 0.87750 0.82741 0.77808 1.90799 1.14190 1.85912 1.49375 1.46217 1.10760 1.05882 1.74231 1.21731 0.93196 0.83999 1.00923 1.19331 0.95498 0.89864 0.97825 1.21057 0.93195 0.90458 1.51243 0.92210 1.24991 0.95112 0.99185 0.94996 1.69949 1.10382 1.22569 1.50469 0.86510 0.80772 0.82074 0.78198 1.20562 1.21182 1.19708 0.91437 0.91443 0.90587 0.91804 0.91803 0.89921 0.90323 0.90154 0.83975 0.83454 0.77195 0.92439 0.92444 0.95934 0.95923 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.06 0.74 6.03 37.16 0.22 0.97 16 3 O -0.27 -4.38 8.22 -39.76 -0.33 -4.71 16 4 C 0.38 5.89 7.51 -16.61 -0.12 5.77 16 5 N -0.55 -7.30 9.11 -9.21 -0.08 -7.38 16 6 C 0.19 1.97 6.78 -82.53 -0.56 1.41 16 7 C -0.11 -0.71 10.16 36.01 0.37 -0.34 16 8 C -0.22 -2.18 9.71 -39.50 -0.38 -2.56 16 9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.45 16 10 C -0.21 -3.27 5.90 -104.69 -0.62 -3.89 16 11 C 0.55 10.48 7.77 -12.48 -0.10 10.38 16 12 O -0.53 -11.77 15.19 -16.48 -0.25 -12.02 16 13 N -0.72 -13.19 5.51 -61.36 -0.34 -13.53 16 14 C 0.12 2.69 5.61 -4.04 -0.02 2.67 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 17 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.72 8.10 -51.93 -0.42 0.29 16 28 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.15 1.43 6.51 -52.49 -0.34 1.08 16 34 H 0.39 6.11 6.57 -40.82 -0.27 5.84 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -33.76 335.98 -7.62 -41.38 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.64 Total: 0.48 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.76 Total: -0.33 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.31 Total: -46.30 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.58 Total: -16.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.76 -7.62 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276894634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.653 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds