Wall clock time and date at job start Tue Mar 31 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47196 * 2 1 4 4 C 1.35434 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32237 * 119.80032 * 0.02562 * 4 3 2 6 6 C 1.31876 * 121.80169 * 179.97438 * 5 4 3 7 7 C 1.50703 * 119.40618 * 179.97438 * 6 5 4 8 8 C 1.38353 * 121.18527 * 0.27617 * 6 5 4 9 9 C 1.38342 * 119.45889 * 359.45017 * 8 6 5 10 10 C 1.39983 * 118.34688 * 0.53683 * 9 8 6 11 11 C 1.47518 * 120.59941 * 179.70658 * 10 9 8 12 12 O 1.21586 * 120.00330 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99814 * 0.02562 * 11 10 9 14 14 C 1.46494 * 119.99955 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47164 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47400 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00266 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46818 * 89.99838 * 20 18 16 22 22 H 1.48494 * 109.47202 * 209.99870 * 20 18 16 23 23 H 1.48503 * 109.47128 * 330.00176 * 20 18 16 24 24 H 1.09003 * 109.46701 * 300.00024 * 1 2 3 25 25 H 1.09003 * 109.47112 * 59.99403 * 1 2 3 26 26 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46976 * 240.00444 * 2 1 3 28 28 H 1.08996 * 109.46757 * 120.00487 * 2 1 3 29 29 H 1.09002 * 109.47152 * 90.00070 * 7 6 5 30 30 H 1.09001 * 109.46980 * 330.00170 * 7 6 5 31 31 H 1.09004 * 109.47113 * 210.00151 * 7 6 5 32 32 H 1.08000 * 120.26943 * 179.72568 * 8 6 5 33 33 H 1.08000 * 120.82733 * 180.23468 * 9 8 6 34 34 H 0.96999 * 119.99622 * 0.02562 * 13 11 10 35 35 H 1.08995 * 109.47638 * 299.99977 * 14 13 11 36 36 H 1.09004 * 109.47233 * 60.00376 * 14 13 11 37 37 H 1.08995 * 109.47022 * 300.00596 * 15 14 13 38 38 H 1.09004 * 109.46541 * 60.00194 * 15 14 13 39 39 H 0.97000 * 120.00514 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1509 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6355 0.0011 8 6 6.0626 1.8471 0.0063 9 6 5.2715 2.9820 0.0005 10 6 3.8807 2.8228 0.0006 11 6 2.9903 3.9989 0.0011 12 8 1.7838 3.8480 0.0016 13 7 3.5141 5.2407 0.0010 14 6 2.6298 6.4087 0.0010 15 6 3.4720 7.6861 0.0016 16 6 2.5624 8.8875 0.0022 17 1 1.4907 8.7535 0.0026 18 6 3.0982 10.1579 0.0022 19 7 4.4032 10.3211 0.0012 20 14 1.9707 11.6473 0.0037 21 1 1.6731 12.0413 1.4042 22 1 2.6380 12.7740 -0.6964 23 1 0.7046 11.3103 -0.6954 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 6.5345 -0.9338 -1.0264 30 1 5.8048 -1.4427 0.5152 31 1 7.2641 -0.4235 0.5149 32 1 7.1391 1.9339 0.0107 33 1 5.7158 3.9664 0.0010 34 1 4.4766 5.3610 0.0003 35 1 2.0008 6.3882 -0.8889 36 1 2.0008 6.3883 0.8911 37 1 4.1007 7.7063 0.8917 38 1 4.1013 7.7067 -0.8883 39 1 4.7802 11.2148 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276894634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:26 Heat of formation + Delta-G solvation = -78.291297 kcal Electronic energy + Delta-G solvation = -20925.428280 eV Core-core repulsion = 17638.989062 eV Total energy + Delta-G solvation = -3286.439218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01276 -40.20907 -39.22237 -36.59488 -34.95454 -34.19187 -33.26954 -31.90546 -31.46035 -28.92976 -26.78553 -24.88276 -24.19339 -23.31751 -22.89919 -21.62540 -19.49978 -18.72682 -18.43546 -17.77634 -17.43478 -16.49419 -16.40730 -16.38051 -15.55817 -15.37613 -15.31174 -15.05148 -14.72729 -14.29980 -14.10505 -13.94792 -13.53167 -13.31361 -13.21150 -13.00924 -12.96121 -12.82763 -12.54261 -12.46403 -12.24785 -11.69466 -11.67903 -11.48022 -11.15909 -10.98183 -10.62706 -10.60336 -10.07527 -9.46876 -8.24169 -6.34334 -0.39297 0.20455 1.41968 1.42344 1.53902 1.83330 1.96784 2.16533 2.43819 2.73486 3.10206 3.10587 3.68017 3.72430 3.86629 4.03428 4.10965 4.21196 4.29268 4.39276 4.48030 4.53364 4.69142 4.78859 4.82639 4.83804 4.89304 4.93026 4.99401 5.15733 5.18365 5.26133 5.47106 5.49720 5.57753 5.78162 6.16055 6.22685 6.55955 6.73674 6.78238 7.23793 7.34747 8.87708 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.003480 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.113215 B = 8043.834241 C = 9212.593407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.300 6.300 4 C 0.358 3.642 5 N -0.557 5.557 6 C 0.184 3.816 7 C -0.104 4.104 8 C -0.208 4.208 9 C -0.002 4.002 10 C -0.242 4.242 11 C 0.554 3.446 12 O -0.570 6.570 13 N -0.713 5.713 14 C 0.143 3.857 15 C 0.024 3.976 16 C -0.548 4.548 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.268 1.268 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.185 0.815 33 H 0.167 0.833 34 H 0.408 0.592 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.990 -23.577 -0.018 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.206 6.206 4 C 0.178 3.822 5 N -0.283 5.283 6 C 0.047 3.953 7 C -0.161 4.161 8 C -0.227 4.227 9 C -0.028 4.028 10 C -0.249 4.249 11 C 0.342 3.658 12 O -0.450 6.450 13 N -0.365 5.365 14 C 0.019 3.981 15 C -0.013 4.013 16 C -0.587 4.587 17 H 0.075 0.925 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.192 1.192 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.127 0.873 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.202 0.798 33 H 0.185 0.815 34 H 0.245 0.755 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.622 -24.169 -0.019 24.607 hybrid contribution 0.064 1.809 -0.003 1.811 sum 4.686 -22.359 -0.022 22.845 Atomic orbital electron populations 1.21819 0.91770 1.04132 1.02725 1.22875 0.96097 0.80156 1.02589 1.86531 1.16480 1.31756 1.85795 1.19958 0.84653 0.88975 0.88580 1.67368 1.07178 1.31611 1.22149 1.22010 0.88281 0.97458 0.87561 1.20956 0.98205 0.92132 1.04778 1.22187 1.03382 0.90901 1.06259 1.22009 0.89765 1.01983 0.89014 1.20013 0.95460 0.91240 1.18145 1.18291 0.87730 0.83424 0.76356 1.90760 1.16278 1.86563 1.51436 1.45972 1.11125 1.05014 1.74343 1.21245 0.92858 0.84188 0.99798 1.19133 0.95058 0.90597 0.96553 1.21458 0.93602 0.91925 1.51672 0.92456 1.25843 0.96656 1.02150 0.94371 1.70043 1.11942 1.23531 1.50919 0.85455 0.78827 0.78303 0.78528 1.19756 1.20379 1.19209 0.92559 0.92564 0.87297 0.91176 0.91177 0.88342 0.90363 0.87282 0.79752 0.81540 0.75469 0.93619 0.93605 0.97051 0.97041 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.06 1.41 6.03 71.98 0.43 1.85 16 3 O -0.30 -10.30 8.22 -66.48 -0.55 -10.84 16 4 C 0.36 11.35 7.51 85.13 0.64 11.99 16 5 N -0.56 -14.20 9.11 -296.05 -2.70 -16.90 16 6 C 0.18 3.38 6.78 42.58 0.29 3.67 16 7 C -0.10 -0.96 10.16 71.24 0.72 -0.24 16 8 C -0.21 -3.36 9.71 22.32 0.22 -3.14 16 9 C 0.00 -0.05 9.64 22.72 0.22 0.17 16 10 C -0.24 -7.62 5.90 -19.91 -0.12 -7.74 16 11 C 0.55 21.69 7.77 86.69 0.67 22.36 16 12 O -0.57 -26.89 15.19 16.83 0.26 -26.64 16 13 N -0.71 -26.70 5.51 -466.29 -2.57 -29.27 16 14 C 0.14 6.43 5.61 86.38 0.48 6.91 16 15 C 0.02 1.23 5.09 29.85 0.15 1.38 16 16 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.92 -54.11 13.29 21.45 0.28 -53.82 16 20 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 28 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.44 8.07 -2.38 -0.02 0.42 16 32 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.17 2.86 6.51 -2.91 -0.02 2.84 16 34 H 0.41 12.65 6.57 -92.71 -0.61 12.04 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.25 335.98 2.35 -72.90 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.44 Total: 13.56 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.15 Total: 5.07 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -4.98 Total: -100.00 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.29 Total: -37.48 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -75.25 2.35 -72.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276894634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.391 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds