Wall clock time and date at job start Tue Mar 31 2020 00:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47162 * 2 1 4 4 C 1.46504 * 119.99505 * 269.99675 * 3 2 1 5 5 C 1.50695 * 109.46733 * 269.99557 * 4 3 2 6 6 H 1.07996 * 120.00709 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99397 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00148 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99500 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47185 * 120.00077 * 9 7 5 12 12 H 1.48496 * 109.46745 * 239.99700 * 9 7 5 13 13 C 1.34774 * 120.00138 * 89.99225 * 3 2 1 14 14 O 1.21277 * 119.99949 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00113 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47315 * 179.97438 * 15 13 3 17 17 C 1.35762 * 119.62393 * 270.02273 * 16 15 13 18 18 C 1.35354 * 120.70391 * 179.97438 * 17 16 15 19 19 C 1.40197 * 119.94534 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.36415 * 180.02562 * 19 18 17 21 21 C 1.36396 * 119.26438 * 359.73962 * 19 18 17 22 22 C 1.34662 * 119.62692 * 89.99403 * 16 15 13 23 23 O 1.22063 * 119.98236 * 0.02562 * 22 16 15 24 24 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47604 * 300.00277 * 1 2 3 26 26 H 1.08996 * 109.46948 * 60.00673 * 1 2 3 27 27 H 1.08994 * 109.47518 * 239.99197 * 2 1 3 28 28 H 1.09004 * 109.46661 * 119.99486 * 2 1 3 29 29 H 1.09000 * 109.46891 * 29.99925 * 4 3 2 30 30 H 1.08999 * 109.46478 * 149.99603 * 4 3 2 31 31 H 0.97001 * 119.99885 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47441 * 59.99682 * 15 13 3 33 33 H 1.09000 * 109.47213 * 299.99498 * 15 13 3 34 34 H 1.07997 * 119.64966 * 359.97438 * 17 16 15 35 35 H 1.07998 * 120.02791 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.47029 * 89.99971 * 20 19 18 37 37 H 1.08997 * 109.47107 * 209.99377 * 20 19 18 38 38 H 1.08998 * 109.47480 * 329.99949 * 20 19 18 39 39 H 1.08004 * 120.34796 * 180.25117 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7036 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6177 9 14 5.9136 2.0962 -3.4168 10 1 6.6009 1.2404 -2.4167 11 1 5.9208 1.4179 -4.7379 12 1 6.6216 3.3971 -3.5245 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9921 1.3062 2.4723 16 7 2.3097 2.2036 3.5858 17 6 3.5680 2.2217 4.0952 18 6 3.8857 3.0426 5.1234 19 6 2.9098 3.8861 5.6726 20 6 3.2533 4.8043 6.8172 21 6 1.6477 3.8708 5.1556 22 6 1.3505 3.0017 4.0920 23 8 0.2238 2.9741 3.6232 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6875 -2.0284 30 1 2.0955 3.1409 -1.1385 31 1 3.6758 3.5173 -4.4432 32 1 2.6226 0.4189 2.5300 33 1 0.9442 1.0117 2.5302 34 1 4.3236 1.5741 3.6755 35 1 4.8902 3.0483 5.5199 36 1 3.5961 5.7616 6.4247 37 1 2.3693 4.9607 7.4353 38 1 4.0428 4.3547 7.4193 39 1 0.8835 4.5164 5.5626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277879237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:30 Heat of formation + Delta-G solvation = -37.921655 kcal Electronic energy + Delta-G solvation = -21841.972459 eV Core-core repulsion = 18557.283800 eV Total energy + Delta-G solvation = -3284.688659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32053 -38.92754 -36.87116 -35.54654 -34.99835 -32.85147 -30.51964 -30.11807 -29.40850 -27.76889 -26.11772 -23.62141 -23.08438 -22.75977 -21.40548 -18.80822 -17.43674 -17.33154 -16.82891 -16.41303 -15.93070 -15.37535 -14.98695 -14.59299 -14.34268 -14.12502 -13.79439 -13.52096 -13.40327 -13.14238 -12.81053 -12.58028 -12.25872 -12.08998 -11.94676 -11.68423 -11.60501 -11.52236 -11.23791 -10.93279 -10.77026 -10.59192 -10.18213 -9.95325 -9.77188 -9.66729 -8.98627 -8.47606 -7.84150 -7.75351 -6.07913 -4.13294 0.91561 1.98832 2.66976 3.23372 3.26446 3.34262 3.37103 3.66714 3.95657 4.40524 4.56409 4.64592 4.80155 4.91320 4.99414 5.14976 5.24475 5.26661 5.32482 5.40872 5.42613 5.54381 5.60744 5.71163 5.75593 5.98324 6.00428 6.13633 6.20353 6.40058 6.49211 6.59475 6.99749 7.20590 7.40968 7.46659 7.87487 8.18387 8.19943 8.30689 8.82112 8.97021 9.51673 11.00307 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.004905 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.600363 B = 5707.582511 C = 6568.548674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.494 3.506 14 O -0.528 6.528 15 C 0.067 3.933 16 N -0.477 5.477 17 C 0.153 3.847 18 C -0.238 4.238 19 C 0.014 3.986 20 C -0.121 4.121 21 C -0.251 4.251 22 C 0.522 3.478 23 O -0.554 6.554 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 -5.895 17.789 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.279 3.721 14 O -0.405 6.405 15 C -0.058 4.058 16 N -0.187 5.187 17 C 0.025 3.975 18 C -0.261 4.261 19 C 0.010 3.990 20 C -0.177 4.177 21 C -0.273 4.273 22 C 0.324 3.676 23 O -0.437 6.437 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.560 -5.216 17.252 18.032 hybrid contribution 1.080 -0.173 -0.566 1.232 sum 0.521 -5.389 16.685 17.542 Atomic orbital electron populations 1.22245 0.96465 1.01587 1.02779 1.21479 0.93843 0.83921 1.02725 1.48237 1.63363 1.13347 1.07438 1.19313 0.96393 0.93707 0.77812 1.21435 0.96800 1.32029 1.06359 0.92427 1.24948 0.97893 0.94886 0.96384 1.69944 1.35605 1.33287 1.14320 0.86435 0.84533 0.78044 0.78334 1.19840 1.20918 1.20876 1.20278 0.79420 0.87340 0.85087 1.90718 1.45456 1.17549 1.86750 1.22007 1.05642 0.92676 0.85506 1.45089 1.10112 1.35018 1.28465 1.21913 0.86013 0.96963 0.92585 1.20452 1.00960 1.02593 1.02079 1.20156 0.92700 0.92435 0.93663 1.20903 1.02551 0.98684 0.95599 1.21867 0.98507 1.05633 1.01276 1.17057 0.84602 0.81280 0.84644 1.90937 1.20686 1.68849 1.63183 0.91981 0.92756 0.91858 0.89539 0.91910 0.94769 0.93895 0.92703 0.86801 0.85876 0.82244 0.83914 0.90171 0.91020 0.90938 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.49 10.42 7.74 -10.99 -0.09 10.34 16 14 O -0.53 -13.73 16.01 5.56 0.09 -13.65 16 15 C 0.07 1.03 4.37 -5.20 -0.02 1.01 16 16 N -0.48 -7.51 2.07 -121.07 -0.25 -7.76 16 17 C 0.15 1.90 10.28 -16.84 -0.17 1.73 16 18 C -0.24 -2.61 9.71 -39.87 -0.39 -2.99 16 19 C 0.01 0.17 5.89 -104.55 -0.62 -0.45 16 20 C -0.12 -0.96 10.03 36.00 0.36 -0.60 16 21 C -0.25 -3.67 9.65 -39.38 -0.38 -4.05 16 22 C 0.52 9.35 7.40 -15.45 -0.11 9.24 16 23 O -0.55 -11.87 16.64 4.86 0.08 -11.79 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.77 7.22 -51.93 -0.38 0.39 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 29 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 32 H 0.11 1.24 7.27 -51.93 -0.38 0.87 16 33 H 0.12 1.83 6.43 -51.93 -0.33 1.50 16 34 H 0.16 1.50 8.04 -52.49 -0.42 1.08 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -37.23 334.38 -6.83 -44.06 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.57 Total: -0.58 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.51 Total: 6.81 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.06 Total: -46.46 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.23 -6.83 -44.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277879237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.134 kcal (2) G-P(sol) polarization free energy of solvation -37.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds