Wall clock time and date at job start Tue Mar 31 2020 00:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47162 * 2 1 4 4 C 1.46504 * 119.99505 * 269.99675 * 3 2 1 5 5 C 1.50695 * 109.46733 * 269.99557 * 4 3 2 6 6 H 1.07996 * 120.00709 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99397 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00148 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99500 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47185 * 120.00077 * 9 7 5 12 12 H 1.48496 * 109.46745 * 239.99700 * 9 7 5 13 13 C 1.34774 * 120.00138 * 89.99225 * 3 2 1 14 14 O 1.21277 * 119.99949 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00113 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47315 * 179.97438 * 15 13 3 17 17 C 1.35762 * 119.62393 * 270.02273 * 16 15 13 18 18 C 1.35354 * 120.70391 * 179.97438 * 17 16 15 19 19 C 1.40197 * 119.94534 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.36415 * 180.02562 * 19 18 17 21 21 C 1.36396 * 119.26438 * 359.73962 * 19 18 17 22 22 C 1.34662 * 119.62692 * 89.99403 * 16 15 13 23 23 O 1.22063 * 119.98236 * 0.02562 * 22 16 15 24 24 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47604 * 300.00277 * 1 2 3 26 26 H 1.08996 * 109.46948 * 60.00673 * 1 2 3 27 27 H 1.08994 * 109.47518 * 239.99197 * 2 1 3 28 28 H 1.09004 * 109.46661 * 119.99486 * 2 1 3 29 29 H 1.09000 * 109.46891 * 29.99925 * 4 3 2 30 30 H 1.08999 * 109.46478 * 149.99603 * 4 3 2 31 31 H 0.97001 * 119.99885 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47441 * 59.99682 * 15 13 3 33 33 H 1.09000 * 109.47213 * 299.99498 * 15 13 3 34 34 H 1.07997 * 119.64966 * 359.97438 * 17 16 15 35 35 H 1.07998 * 120.02791 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.47029 * 89.99971 * 20 19 18 37 37 H 1.08997 * 109.47107 * 209.99377 * 20 19 18 38 38 H 1.08998 * 109.47480 * 329.99949 * 20 19 18 39 39 H 1.08004 * 120.34796 * 180.25117 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7036 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6177 9 14 5.9136 2.0962 -3.4168 10 1 6.6009 1.2404 -2.4167 11 1 5.9208 1.4179 -4.7379 12 1 6.6216 3.3971 -3.5245 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9921 1.3062 2.4723 16 7 2.3097 2.2036 3.5858 17 6 3.5680 2.2217 4.0952 18 6 3.8857 3.0426 5.1234 19 6 2.9098 3.8861 5.6726 20 6 3.2533 4.8043 6.8172 21 6 1.6477 3.8708 5.1556 22 6 1.3505 3.0017 4.0920 23 8 0.2238 2.9741 3.6232 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 1.5818 1.6875 -2.0284 30 1 2.0955 3.1409 -1.1385 31 1 3.6758 3.5173 -4.4432 32 1 2.6226 0.4189 2.5300 33 1 0.9442 1.0117 2.5302 34 1 4.3236 1.5741 3.6755 35 1 4.8902 3.0483 5.5199 36 1 3.5961 5.7616 6.4247 37 1 2.3693 4.9607 7.4353 38 1 4.0428 4.3547 7.4193 39 1 0.8835 4.5164 5.5626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277879237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:29 Heat of formation + Delta-G solvation = -63.232585 kcal Electronic energy + Delta-G solvation = -21843.070023 eV Core-core repulsion = 18557.283800 eV Total energy + Delta-G solvation = -3285.786223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50808 -40.53259 -38.09057 -37.12280 -36.20992 -34.92498 -31.84203 -31.40124 -30.56248 -29.27945 -27.58987 -24.91030 -24.64974 -24.18222 -22.52517 -20.35603 -18.72562 -18.58346 -18.49150 -18.19657 -17.08211 -16.97288 -16.39515 -16.30969 -15.86440 -15.17257 -14.97326 -14.82165 -14.59910 -14.46406 -14.15520 -13.72732 -13.56421 -13.36929 -13.28583 -13.15347 -12.95133 -12.87254 -12.67565 -12.52313 -12.44425 -12.18379 -11.94158 -11.70592 -11.12984 -11.05197 -10.67369 -10.46827 -9.54070 -8.97545 -8.23972 -6.39694 -0.10574 0.92382 1.37004 1.39492 1.50578 1.52985 1.64372 2.23000 2.40594 2.70993 3.06311 3.50490 3.64293 3.73635 3.86353 3.97616 4.13590 4.18215 4.32381 4.36504 4.41500 4.59245 4.78436 4.84786 4.85949 4.92101 4.92816 4.99690 5.11187 5.17116 5.25204 5.34861 5.48791 5.53679 5.67798 5.78918 6.01865 6.08212 6.60902 6.71326 6.97944 7.21253 7.36028 8.84207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.004905 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.600363 B = 5707.582511 C = 6568.548674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.974 3.026 10 H -0.259 1.259 11 H -0.271 1.271 12 H -0.285 1.285 13 C 0.485 3.515 14 O -0.591 6.591 15 C 0.080 3.920 16 N -0.483 5.483 17 C 0.135 3.865 18 C -0.229 4.229 19 C 0.033 3.967 20 C -0.120 4.120 21 C -0.291 4.291 22 C 0.500 3.500 23 O -0.613 6.613 24 H 0.102 0.898 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.021 0.979 30 H -0.013 1.013 31 H 0.266 0.734 32 H 0.170 0.830 33 H 0.128 0.872 34 H 0.195 0.805 35 H 0.185 0.815 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -8.110 19.890 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.798 3.202 10 H -0.183 1.183 11 H -0.196 1.196 12 H -0.211 1.211 13 C 0.272 3.728 14 O -0.471 6.471 15 C -0.045 4.045 16 N -0.191 5.191 17 C 0.009 3.991 18 C -0.251 4.251 19 C 0.029 3.971 20 C -0.176 4.176 21 C -0.312 4.312 22 C 0.306 3.694 23 O -0.502 6.502 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.039 0.961 30 H 0.005 0.995 31 H 0.075 0.925 32 H 0.187 0.813 33 H 0.145 0.855 34 H 0.212 0.788 35 H 0.202 0.798 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.314 -7.492 19.391 20.917 hybrid contribution 0.226 0.550 -1.159 1.302 sum 2.540 -6.942 18.233 19.674 Atomic orbital electron populations 1.22192 0.95337 1.03670 1.01183 1.21873 0.94771 0.80907 1.04946 1.48256 1.63254 1.15365 1.05853 1.18729 0.95913 0.91094 0.80167 1.21717 0.97388 1.32036 1.06591 0.91901 1.25962 1.02746 0.94376 0.96436 1.70089 1.37982 1.34317 1.14872 0.85275 0.78491 0.77959 0.78506 1.18265 1.19621 1.21081 1.21316 0.77851 0.86851 0.86770 1.90675 1.48242 1.20357 1.87861 1.22040 1.07231 0.93273 0.81994 1.45131 1.11068 1.34744 1.28202 1.22681 0.85234 0.98086 0.93067 1.21064 1.02411 1.00752 1.00880 1.20659 0.91359 0.91684 0.93393 1.21029 1.03952 0.98179 0.94488 1.21900 1.00436 1.06794 1.02118 1.17615 0.84440 0.81975 0.85411 1.90879 1.22908 1.71018 1.65367 0.87952 0.93278 0.94568 0.89848 0.87033 0.96062 0.99474 0.92471 0.81266 0.85458 0.78775 0.79773 0.89412 0.90191 0.88074 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 10.24 71.98 0.74 -3.69 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.45 2.46 -826.16 -2.03 -27.48 16 4 C 0.26 14.49 5.16 85.63 0.44 14.93 16 5 C -0.54 -30.69 9.39 25.60 0.24 -30.45 16 6 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 7 C 0.00 0.20 5.46 84.66 0.46 0.66 16 8 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 9 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C 0.48 20.73 7.74 87.66 0.68 21.41 16 14 O -0.59 -32.10 16.01 -3.02 -0.05 -32.15 16 15 C 0.08 2.31 4.37 85.63 0.37 2.69 16 16 N -0.48 -14.75 2.07 -655.07 -1.36 -16.11 16 17 C 0.14 2.97 10.28 83.42 0.86 3.83 16 18 C -0.23 -4.19 9.71 22.08 0.21 -3.98 16 19 C 0.03 0.70 5.89 -19.82 -0.12 0.58 16 20 C -0.12 -1.50 10.03 71.23 0.71 -0.79 16 21 C -0.29 -8.64 9.65 22.40 0.22 -8.42 16 22 C 0.50 18.48 7.40 84.82 0.63 19.11 16 23 O -0.61 -27.97 16.64 -5.52 -0.09 -28.07 16 24 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.36 7.22 -2.39 -0.02 1.35 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 28 H 0.11 2.19 6.44 -2.38 -0.02 2.18 16 29 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 30 H -0.01 -0.85 7.42 -2.39 -0.02 -0.86 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.17 2.93 7.27 -2.39 -0.02 2.91 16 33 H 0.13 3.66 6.43 -2.39 -0.02 3.65 16 34 H 0.20 2.76 8.04 -2.91 -0.02 2.74 16 35 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 38 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 39 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -89.61 334.38 5.78 -83.83 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.04 Total: 11.52 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 5.96 Total: 19.24 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -3.10 Total: -100.58 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -0.14 Total: -60.21 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -89.61 5.78 -83.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277879237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.595 kcal (2) G-P(sol) polarization free energy of solvation -89.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds