Wall clock time and date at job start Tue Mar 31 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.47324 * 2 1 4 4 C 1.34759 * 116.99715 * 180.02562 * 3 2 1 5 5 O 1.21518 * 120.00256 * 359.97438 * 4 3 2 6 6 C 1.47308 * 119.99587 * 179.97438 * 4 3 2 7 7 C 1.39603 * 120.64651 * 5.73299 * 6 4 3 8 8 N 1.31612 * 120.62087 * 180.26254 * 7 6 4 9 9 C 1.32199 * 122.12567 * 359.74710 * 8 7 6 10 10 C 1.37761 * 121.23513 * 0.02562 * 9 8 7 11 11 C 1.39498 * 119.22126 * 359.97438 * 10 9 8 12 12 N 1.38405 * 120.96097 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00190 * 354.52627 * 12 11 10 14 14 C 1.53001 * 109.47533 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47002 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47023 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00167 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00277 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99574 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00348 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47060 * 59.99802 * 20 18 16 22 22 H 1.48499 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46774 * 300.00195 * 20 18 16 24 24 H 1.08998 * 109.46997 * 60.00191 * 1 2 3 25 25 H 1.08993 * 109.47300 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47137 * 300.00872 * 1 2 3 27 27 H 1.08992 * 109.47208 * 239.99276 * 2 1 3 28 28 H 1.09006 * 109.46928 * 119.99517 * 2 1 3 29 29 H 1.07998 * 119.68934 * 359.97438 * 7 6 4 30 30 H 1.07996 * 119.37734 * 180.02562 * 9 8 7 31 31 H 1.08003 * 120.38742 * 180.02562 * 10 9 8 32 32 H 0.97005 * 120.00466 * 174.52535 * 12 11 10 33 33 H 1.09006 * 109.46664 * 60.00237 * 13 12 11 34 34 H 1.09001 * 109.47035 * 300.00632 * 13 12 11 35 35 H 1.08998 * 109.47222 * 300.00518 * 14 13 12 36 36 H 1.09006 * 109.46712 * 60.00560 * 14 13 12 37 37 H 1.08998 * 109.47628 * 300.00358 * 15 14 13 38 38 H 1.09003 * 109.47447 * 60.00298 * 15 14 13 39 39 H 0.97006 * 119.99755 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3501 1.5455 -0.0005 5 8 4.0903 0.5817 -0.0005 6 6 3.9131 2.9067 -0.0011 7 6 3.0809 4.0211 0.1188 8 7 3.5840 5.2372 0.1130 9 6 4.8821 5.4605 0.0002 10 6 5.7781 4.4208 -0.1184 11 6 5.3032 3.1091 -0.1184 12 7 6.1712 2.0375 -0.2360 13 6 7.5960 2.2726 -0.4829 14 6 8.3269 0.9313 -0.5693 15 6 9.8147 1.1769 -0.8279 16 6 10.5344 -0.1443 -0.9136 17 1 9.9855 -1.0669 -0.7960 18 6 11.8936 -0.1754 -1.1434 19 7 12.5620 0.9482 -1.2871 20 14 12.7857 -1.8131 -1.2504 21 1 12.2155 -2.6156 -2.3621 22 1 14.2298 -1.5747 -1.5012 23 1 12.6209 -2.5509 0.0278 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 2.0137 3.8841 0.2126 30 1 5.2469 6.4769 0.0010 31 1 6.8359 4.6189 -0.2093 32 1 5.8363 1.1308 -0.1548 33 1 8.0138 2.8617 0.3336 34 1 7.7176 2.8143 -1.4210 35 1 8.2052 0.3901 0.3689 36 1 7.9091 0.3419 -1.3856 37 1 9.9360 1.7179 -1.7663 38 1 10.2328 1.7665 -0.0120 39 1 13.5183 0.9263 -1.4484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280725716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:24 Heat of formation + Delta-G solvation = -86.923595 kcal Electronic energy + Delta-G solvation = -20724.324014 eV Core-core repulsion = 17437.510472 eV Total energy + Delta-G solvation = -3286.813543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.98778 -40.57757 -38.30260 -37.48875 -35.69504 -33.79782 -33.13998 -32.03441 -31.23923 -28.33638 -26.08314 -25.41017 -23.94431 -23.05622 -22.70495 -21.81923 -19.22247 -18.62871 -18.57336 -17.84051 -17.65288 -17.25131 -16.53709 -16.48392 -15.59783 -15.49531 -15.39742 -15.22288 -14.67527 -14.39793 -14.32900 -13.88851 -13.75686 -13.59349 -13.13447 -12.96200 -12.84636 -12.64559 -12.52520 -12.44901 -12.13606 -11.69175 -11.56336 -11.52965 -11.49665 -11.26175 -10.57993 -10.46864 -10.28719 -8.99378 -8.23649 -6.34436 -0.38896 0.46309 1.38570 1.40912 1.43411 1.49044 1.57680 2.21832 2.40000 2.86897 3.09969 3.47584 3.63833 3.81710 3.93092 4.01351 4.02693 4.08496 4.11760 4.26829 4.36276 4.48826 4.64527 4.77529 4.83497 4.85698 4.92222 4.94409 4.95262 5.07062 5.11866 5.36164 5.44877 5.57547 5.65681 5.79314 6.00566 6.21224 6.47210 6.69979 6.81018 7.02186 7.34709 8.87832 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.003433 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.138190 B = 8155.093872 C = 9600.764011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.348 6.348 4 C 0.527 3.473 5 O -0.549 6.549 6 C -0.294 4.294 7 C 0.212 3.788 8 N -0.552 5.552 9 C 0.172 3.828 10 C -0.270 4.270 11 C 0.296 3.704 12 N -0.711 5.711 13 C 0.121 3.879 14 C -0.107 4.107 15 C 0.031 3.969 16 C -0.549 4.549 17 H 0.056 0.944 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.188 0.812 30 H 0.192 0.808 31 H 0.152 0.848 32 H 0.414 0.586 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.000 1.000 38 H 0.001 0.999 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.374 4.934 3.001 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.265 6.265 4 C 0.376 3.624 5 O -0.442 6.442 6 C -0.304 4.304 7 C 0.052 3.948 8 N -0.265 5.265 9 C 0.022 3.978 10 C -0.295 4.295 11 C 0.176 3.824 12 N -0.343 5.343 13 C -0.002 4.002 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.587 4.587 17 H 0.075 0.925 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.204 0.796 30 H 0.209 0.791 31 H 0.169 0.831 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.335 5.385 3.004 24.136 hybrid contribution 1.515 -2.123 -0.187 2.615 sum -21.820 3.262 2.817 22.241 Atomic orbital electron populations 1.21823 0.89897 1.04434 1.03991 1.23342 0.97312 0.78799 1.02564 1.86528 1.22153 1.33889 1.83881 1.20924 0.81087 0.88979 0.71442 1.90570 1.60270 1.43577 1.49755 1.19612 0.92641 0.92476 1.25633 1.23244 1.00602 0.85496 0.85497 1.67898 1.15370 1.23326 1.19913 1.23202 0.87619 1.00380 0.86641 1.21893 1.03150 0.90414 1.14080 1.18396 0.88212 0.89648 0.86173 1.45775 1.07400 1.08690 1.72416 1.21593 0.78812 0.98476 1.01341 1.21587 0.96418 0.95555 1.00904 1.18886 0.90420 0.95874 0.95522 1.21635 0.93821 0.93839 1.49425 0.92540 1.25923 0.98606 1.00297 0.94681 1.70067 1.08708 1.28245 1.49899 0.85534 0.77298 0.79391 0.79045 1.19339 1.20581 1.19324 0.91040 0.88278 0.90872 0.91549 0.91336 0.79554 0.79090 0.83080 0.74094 0.90895 0.91144 0.92786 0.92930 0.98117 0.98022 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 10.29 71.98 0.74 -0.74 16 2 C 0.05 0.92 6.20 71.98 0.45 1.37 16 3 O -0.35 -7.59 9.51 -56.70 -0.54 -8.13 16 4 C 0.53 14.38 7.88 70.21 0.55 14.94 16 5 O -0.55 -17.84 13.58 19.78 0.27 -17.58 16 6 C -0.29 -7.70 5.91 -19.90 -0.12 -7.81 16 7 C 0.21 4.64 10.79 85.06 0.92 5.56 16 8 N -0.55 -12.36 10.34 -195.03 -2.02 -14.38 16 9 C 0.17 3.47 11.15 84.52 0.94 4.41 16 10 C -0.27 -6.38 9.37 22.46 0.21 -6.17 16 11 C 0.30 8.37 6.69 39.08 0.26 8.63 16 12 N -0.71 -22.59 5.59 -338.20 -1.89 -24.48 16 13 C 0.12 4.03 4.98 86.38 0.43 4.46 16 14 C -0.11 -4.37 5.27 30.59 0.16 -4.20 16 15 C 0.03 1.58 4.97 29.85 0.15 1.72 16 16 C -0.55 -31.25 9.11 25.60 0.23 -31.01 16 17 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 18 C 0.00 0.18 5.46 84.65 0.46 0.65 16 19 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 20 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.19 3.05 7.63 -2.91 -0.02 3.03 16 30 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.15 3.27 6.87 -2.91 -0.02 3.25 16 32 H 0.41 14.17 5.17 -92.70 -0.48 13.69 16 33 H 0.07 2.31 7.78 -2.38 -0.02 2.29 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 2.16 8.14 -2.38 -0.02 2.15 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -67.35 334.21 4.09 -63.26 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.57 Total: 18.82 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.39 Total: -8.21 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -3.62 Total: -94.38 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.27 Total: -25.71 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.35 4.09 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280725716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.666 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds